September 2013 - Release-team - mailman3.cels.anl.gov

Re: [Release-team] Tutorial links from Services page all broken
by Neal Conrad 24 Sep '13

24 Sep '13

Oh, that would be great. Thanks Sarah and Bill. We just need to go back to bill's commit. On Sep 24, 2013, at 4:53 PM, Sarah Poon wrote: > Bill is going to help fix the git repo, if that's ok > > > On Tue, Sep 24, 2013 at 2:51 PM, Neal Conrad <nconrad(a)mcs.anl.gov> wrote: > I would have ran this by now, but i screwed up my working local repo... and to reclone involves downloading 2gig of data. > > > On Sep 24, 2013, at 4:50 PM, Thomas Brown wrote: > > > I'm looking at: > > http://stackoverflow.com/questions/9764288/git-reset-to-previous-commit > > > > > > ----- Original Message ----- > > From: "Thomas Brettin" <brettin(a)mcs.anl.gov> > > To: "Neal Conrad" <nconrad(a)mcs.anl.gov> > > Cc: "Dan Olson" <dolson(a)mcs.anl.gov>, "Nomi Harris" <nlharris(a)lbl.gov>, "Elizabeth Marie Marland Glass" <marland(a)mcs.anl.gov>, "Thomas Brown" <tbrown(a)cels.anl.gov>, "Sarah Poon" <sspoon(a)lbl.gov>, release-team(a)kbase.us > > Sent: Tuesday, September 24, 2013 4:48:18 PM > > Subject: Re: [Release-team] Tutorial links from Services page all broken > > > > Not sure, but it seems plausible. You'll need to push the changes to git.kbase.us , > > > > > > t > > > > > > > > > > > > > > On Sep 24, 2013, at 4:46 PM, Neal Conrad < nconrad(a)mcs.anl.gov > wrote: > > > > > > > > Tom Brown accidently removed all the docs from the repo. > > > > > > Anybody know how to easily revert? is it git revert -n master~3 to go back 3 commits? > > > > > > > > > > Thanks, > > > > > > Neal > > > > > > > > > > On Sep 24, 2013, at 4:42 PM, Thomas Brettin wrote: > > > > > > Looping Elizabeth in on this. Please include her. > > > > > > On Sep 24, 2013, at 4:41 PM, Nomi Harris < nlharris(a)lbl.gov > wrote: > > > > > > > > All of the tutorials seem to have disappeared from kbase.us . If you go to http://www.kbase.us/developer-zone/services/ and click on any of the Tutorial links (e.g., http://www.kbase.us/for-users/tutorials/analyzing-data/plant-genome-analysi… ) you get an error message: > > > > > > Warning: readfile(docs/ontology_service/tutorials/ontology_tutorial.html): failed to open stream: No such file or directory in /var/www/ksite3/blocks/basic_test/view.php on line 4 > > > > > > > > > > > > Tom Brown, can you fix this ASAP? (I will also create a JIRA ticket.) > > > > > > > > > > > > Thanks, > > > > > > Nomi > > > > > > _______________________________________________ > > > > > > Release-team mailing list > > > > > > Release-team(a)lists.kbase.us > > > > > > https://lists.kbase.us/mailman/listinfo/release-team > > > > > > > > >

1 0

Re: [Release-team] Tutorial links from Services page all broken
by Sarah Poon 24 Sep '13

24 Sep '13

Bill is going to help fix the git repo, if that's ok On Tue, Sep 24, 2013 at 2:51 PM, Neal Conrad <nconrad(a)mcs.anl.gov> wrote: > I would have ran this by now, but i screwed up my working local repo... > and to reclone involves downloading 2gig of data. > > > On Sep 24, 2013, at 4:50 PM, Thomas Brown wrote: > > > I'm looking at: > > http://stackoverflow.com/questions/9764288/git-reset-to-previous-commit > > > > > > ----- Original Message ----- > > From: "Thomas Brettin" <brettin(a)mcs.anl.gov> > > To: "Neal Conrad" <nconrad(a)mcs.anl.gov> > > Cc: "Dan Olson" <dolson(a)mcs.anl.gov>, "Nomi Harris" <nlharris(a)lbl.gov>, > "Elizabeth Marie Marland Glass" <marland(a)mcs.anl.gov>, "Thomas Brown" < > tbrown(a)cels.anl.gov>, "Sarah Poon" <sspoon(a)lbl.gov>, release-team(a)kbase.us > > Sent: Tuesday, September 24, 2013 4:48:18 PM > > Subject: Re: [Release-team] Tutorial links from Services page all broken > > > > Not sure, but it seems plausible. You'll need to push the changes to > git.kbase.us , > > > > > > t > > > > > > > > > > > > > > On Sep 24, 2013, at 4:46 PM, Neal Conrad < nconrad(a)mcs.anl.gov > wrote: > > > > > > > > Tom Brown accidently removed all the docs from the repo. > > > > > > Anybody know how to easily revert? is it git revert -n master~3 to go > back 3 commits? > > > > > > > > > > Thanks, > > > > > > Neal > > > > > > > > > > On Sep 24, 2013, at 4:42 PM, Thomas Brettin wrote: > > > > > > Looping Elizabeth in on this. Please include her. > > > > > > On Sep 24, 2013, at 4:41 PM, Nomi Harris < nlharris(a)lbl.gov > wrote: > > > > > > > > All of the tutorials seem to have disappeared from kbase.us . If you go > to http://www.kbase.us/developer-zone/services/ and click on any of the > Tutorial links (e.g., > http://www.kbase.us/for-users/tutorials/analyzing-data/plant-genome-analysi…) you get an error message: > > > > > > Warning: > readfile(docs/ontology_service/tutorials/ontology_tutorial.html): failed to > open stream: No such file or directory in > /var/www/ksite3/blocks/basic_test/view.php on line 4 > > > > > > > > > > > > Tom Brown, can you fix this ASAP? (I will also create a JIRA ticket.) > > > > > > > > > > > > Thanks, > > > > > > Nomi > > > > > > _______________________________________________ > > > > > > Release-team mailing list > > > > > > Release-team(a)lists.kbase.us > > > > > > https://lists.kbase.us/mailman/listinfo/release-team > > > > > > > > >

1 0

Re: [Release-team] Tutorial links from Services page all broken
by Thomas Brown 24 Sep '13

24 Sep '13

I can add/commit/push from my end ... ----- Original Message ----- From: "Neal Conrad" <nconrad(a)mcs.anl.gov> To: "Thomas Brown" <tbrown(a)cels.anl.gov> Cc: "Thomas Brettin" <brettin(a)mcs.anl.gov>, "Dan Olson" <dolson(a)mcs.anl.gov>, "Nomi Harris" <nlharris(a)lbl.gov>, "Elizabeth Marie Marland Glass" <marland(a)mcs.anl.gov>, "Sarah Poon" <sspoon(a)lbl.gov>, release-team(a)kbase.us Sent: Tuesday, September 24, 2013 4:51:02 PM Subject: Re: [Release-team] Tutorial links from Services page all broken I would have ran this by now, but i screwed up my working local repo... and to reclone involves downloading 2gig of data. On Sep 24, 2013, at 4:50 PM, Thomas Brown wrote: > I'm looking at: > http://stackoverflow.com/questions/9764288/git-reset-to-previous-commit > > > ----- Original Message ----- > From: "Thomas Brettin" <brettin(a)mcs.anl.gov> > To: "Neal Conrad" <nconrad(a)mcs.anl.gov> > Cc: "Dan Olson" <dolson(a)mcs.anl.gov>, "Nomi Harris" <nlharris(a)lbl.gov>, "Elizabeth Marie Marland Glass" <marland(a)mcs.anl.gov>, "Thomas Brown" <tbrown(a)cels.anl.gov>, "Sarah Poon" <sspoon(a)lbl.gov>, release-team(a)kbase.us > Sent: Tuesday, September 24, 2013 4:48:18 PM > Subject: Re: [Release-team] Tutorial links from Services page all broken > > Not sure, but it seems plausible. You'll need to push the changes to git.kbase.us , > > > t > > > > > > > On Sep 24, 2013, at 4:46 PM, Neal Conrad < nconrad(a)mcs.anl.gov > wrote: > > > > Tom Brown accidently removed all the docs from the repo. > > > Anybody know how to easily revert? is it git revert -n master~3 to go back 3 commits? > > > > > Thanks, > > > Neal > > > > > On Sep 24, 2013, at 4:42 PM, Thomas Brettin wrote: > > > Looping Elizabeth in on this. Please include her. > > > On Sep 24, 2013, at 4:41 PM, Nomi Harris < nlharris(a)lbl.gov > wrote: > > > > All of the tutorials seem to have disappeared from kbase.us . If you go to http://www.kbase.us/developer-zone/services/ and click on any of the Tutorial links (e.g., http://www.kbase.us/for-users/tutorials/analyzing-data/plant-genome-analysi… ) you get an error message: > > > Warning: readfile(docs/ontology_service/tutorials/ontology_tutorial.html): failed to open stream: No such file or directory in /var/www/ksite3/blocks/basic_test/view.php on line 4 > > > > > > Tom Brown, can you fix this ASAP? (I will also create a JIRA ticket.) > > > > > > Thanks, > > > Nomi > > > _______________________________________________ > > > Release-team mailing list > > > Release-team(a)lists.kbase.us > > > https://lists.kbase.us/mailman/listinfo/release-team > > >

1 0

Re: [Release-team] Tutorial links from Services page all broken
by Neal Conrad 24 Sep '13

24 Sep '13

I would have ran this by now, but i screwed up my working local repo... and to reclone involves downloading 2gig of data. On Sep 24, 2013, at 4:50 PM, Thomas Brown wrote: > I'm looking at: > http://stackoverflow.com/questions/9764288/git-reset-to-previous-commit > > > ----- Original Message ----- > From: "Thomas Brettin" <brettin(a)mcs.anl.gov> > To: "Neal Conrad" <nconrad(a)mcs.anl.gov> > Cc: "Dan Olson" <dolson(a)mcs.anl.gov>, "Nomi Harris" <nlharris(a)lbl.gov>, "Elizabeth Marie Marland Glass" <marland(a)mcs.anl.gov>, "Thomas Brown" <tbrown(a)cels.anl.gov>, "Sarah Poon" <sspoon(a)lbl.gov>, release-team(a)kbase.us > Sent: Tuesday, September 24, 2013 4:48:18 PM > Subject: Re: [Release-team] Tutorial links from Services page all broken > > Not sure, but it seems plausible. You'll need to push the changes to git.kbase.us , > > > t > > > > > > > On Sep 24, 2013, at 4:46 PM, Neal Conrad < nconrad(a)mcs.anl.gov > wrote: > > > > Tom Brown accidently removed all the docs from the repo. > > > Anybody know how to easily revert? is it git revert -n master~3 to go back 3 commits? > > > > > Thanks, > > > Neal > > > > > On Sep 24, 2013, at 4:42 PM, Thomas Brettin wrote: > > > Looping Elizabeth in on this. Please include her. > > > On Sep 24, 2013, at 4:41 PM, Nomi Harris < nlharris(a)lbl.gov > wrote: > > > > All of the tutorials seem to have disappeared from kbase.us . If you go to http://www.kbase.us/developer-zone/services/ and click on any of the Tutorial links (e.g., http://www.kbase.us/for-users/tutorials/analyzing-data/plant-genome-analysi… ) you get an error message: > > > Warning: readfile(docs/ontology_service/tutorials/ontology_tutorial.html): failed to open stream: No such file or directory in /var/www/ksite3/blocks/basic_test/view.php on line 4 > > > > > > Tom Brown, can you fix this ASAP? (I will also create a JIRA ticket.) > > > > > > Thanks, > > > Nomi > > > _______________________________________________ > > > Release-team mailing list > > > Release-team(a)lists.kbase.us > > > https://lists.kbase.us/mailman/listinfo/release-team > > >

1 0

Re: [Release-team] Tutorial links from Services page all broken
by Thomas Brown 24 Sep '13

24 Sep '13

I'm looking at: http://stackoverflow.com/questions/9764288/git-reset-to-previous-commit ----- Original Message ----- From: "Thomas Brettin" <brettin(a)mcs.anl.gov> To: "Neal Conrad" <nconrad(a)mcs.anl.gov> Cc: "Dan Olson" <dolson(a)mcs.anl.gov>, "Nomi Harris" <nlharris(a)lbl.gov>, "Elizabeth Marie Marland Glass" <marland(a)mcs.anl.gov>, "Thomas Brown" <tbrown(a)cels.anl.gov>, "Sarah Poon" <sspoon(a)lbl.gov>, release-team(a)kbase.us Sent: Tuesday, September 24, 2013 4:48:18 PM Subject: Re: [Release-team] Tutorial links from Services page all broken Not sure, but it seems plausible. You'll need to push the changes to git.kbase.us , t On Sep 24, 2013, at 4:46 PM, Neal Conrad < nconrad(a)mcs.anl.gov > wrote: Tom Brown accidently removed all the docs from the repo. Anybody know how to easily revert? is it git revert -n master~3 to go back 3 commits? Thanks, Neal On Sep 24, 2013, at 4:42 PM, Thomas Brettin wrote: Looping Elizabeth in on this. Please include her. On Sep 24, 2013, at 4:41 PM, Nomi Harris < nlharris(a)lbl.gov > wrote: All of the tutorials seem to have disappeared from kbase.us . If you go to http://www.kbase.us/developer-zone/services/ and click on any of the Tutorial links (e.g., http://www.kbase.us/for-users/tutorials/analyzing-data/plant-genome-analysi… ) you get an error message: Warning: readfile(docs/ontology_service/tutorials/ontology_tutorial.html): failed to open stream: No such file or directory in /var/www/ksite3/blocks/basic_test/view.php on line 4 Tom Brown, can you fix this ASAP? (I will also create a JIRA ticket.) Thanks, Nomi _______________________________________________ Release-team mailing list Release-team(a)lists.kbase.us https://lists.kbase.us/mailman/listinfo/release-team

1 0

Re: [Release-team] Tutorial links from Services page all broken
by Thomas Brettin 24 Sep '13

24 Sep '13

Not sure, but it seems plausible. You'll need to push the changes to git.kbase.us, t On Sep 24, 2013, at 4:46 PM, Neal Conrad <nconrad(a)mcs.anl.gov> wrote: > Tom Brown accidently removed all the docs from the repo. > > Anybody know how to easily revert? is it git revert -n master~3 to go back 3 commits? > > Thanks, > > Neal > > > On Sep 24, 2013, at 4:42 PM, Thomas Brettin wrote: > >> Looping Elizabeth in on this. Please include her. >> >> >> On Sep 24, 2013, at 4:41 PM, Nomi Harris <nlharris(a)lbl.gov> wrote: >> >>> All of the tutorials seem to have disappeared from kbase.us. If you go to http://www.kbase.us/developer-zone/services/ and click on any of the Tutorial links (e.g., http://www.kbase.us/for-users/tutorials/analyzing-data/plant-genome-analysi…) you get an error message: >>> Warning: readfile(docs/ontology_service/tutorials/ontology_tutorial.html): failed to open stream: No such file or directory in /var/www/ksite3/blocks/basic_test/view.php on line 4 >>> >>> Tom Brown, can you fix this ASAP? (I will also create a JIRA ticket.) >>> >>> Thanks, >>> Nomi >>> _______________________________________________ >>> Release-team mailing list >>> Release-team(a)lists.kbase.us >>> https://lists.kbase.us/mailman/listinfo/release-team >> >

1 0

Re: [Release-team] Tutorial links from Services page all broken
by Neal Conrad 24 Sep '13

24 Sep '13

Tom Brown accidently removed all the docs from the repo. Anybody know how to easily revert? is it git revert -n master~3 to go back 3 commits? Thanks, Neal On Sep 24, 2013, at 4:42 PM, Thomas Brettin wrote: > Looping Elizabeth in on this. Please include her. > > > On Sep 24, 2013, at 4:41 PM, Nomi Harris <nlharris(a)lbl.gov> wrote: > >> All of the tutorials seem to have disappeared from kbase.us. If you go to http://www.kbase.us/developer-zone/services/ and click on any of the Tutorial links (e.g., http://www.kbase.us/for-users/tutorials/analyzing-data/plant-genome-analysi…) you get an error message: >> Warning: readfile(docs/ontology_service/tutorials/ontology_tutorial.html): failed to open stream: No such file or directory in /var/www/ksite3/blocks/basic_test/view.php on line 4 >> >> Tom Brown, can you fix this ASAP? (I will also create a JIRA ticket.) >> >> Thanks, >> Nomi >> _______________________________________________ >> Release-team mailing list >> Release-team(a)lists.kbase.us >> https://lists.kbase.us/mailman/listinfo/release-team >

1 0

Re: [Release-team] Tutorial links from Services page all broken
by Thomas Brettin 24 Sep '13

24 Sep '13

Looping Elizabeth in on this. Please include her. On Sep 24, 2013, at 4:41 PM, Nomi Harris <nlharris(a)lbl.gov> wrote: > All of the tutorials seem to have disappeared from kbase.us. If you go to http://www.kbase.us/developer-zone/services/ and click on any of the Tutorial links (e.g., http://www.kbase.us/for-users/tutorials/analyzing-data/plant-genome-analysi…) you get an error message: > Warning: readfile(docs/ontology_service/tutorials/ontology_tutorial.html): failed to open stream: No such file or directory in /var/www/ksite3/blocks/basic_test/view.php on line 4 > > Tom Brown, can you fix this ASAP? (I will also create a JIRA ticket.) > > Thanks, > Nomi > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team

1 0

Tutorial links from Services page all broken
by Nomi Harris 24 Sep '13

24 Sep '13

All of the tutorials seem to have disappeared from kbase.us. If you go to http://www.kbase.us/developer-zone/services/ and click on any of the Tutorial links (e.g., http://www.kbase.us/for-users/tutorials/analyzing-data/plant-genome-analysi…) you get an error message: Warning: readfile(docs/ontology_service/tutorials/ontology_tutorial.html): failed to open stream: No such file or directory in /var/www/ksite3/blocks/basic_test/view.php on line 4 Tom Brown, can you fix this ASAP? (I will also create a JIRA ticket.) Thanks, Nomi

1 0

module list for current major release
by Robert Olson 24 Sep '13

24 Sep '13

My apologies for not paying close enough attention - do we have a list of approved modules and associated release tags for the major release for which I'm building the DMG? I've got a pretty clean bootstrap built (changes to bootstrap repo have been pushed), thanks dan for setting up the clean build machine for it. --bob

1 0