June 2013 - Release-team - mailman3.cels.anl.gov

Re: [Release-team] Getting the release out
by Nomi Harris 28 Jun '13

28 Jun '13

The release is out! Thanks, everyone, for your help. http://kbase.us/news/june-2013-release/ I am still awaiting answers to these questions: > What about the JavaScript libraries--do we have updates for those? Anyone know? and >>> about communities_api--if it's missing from the dmg because of a Makefile problem, does that also mean that it won't be accessible in IRIS? And, if that's the case, should I remove Communities API from http://kbase.us/developer-zone/services/ or leave it there but put a note that it's not available in this release? I left the disabled Labs on the Labs page but took out the links and put "(Currently unavailable)" after their descriptions. Thanks, Nomi On Jun 28, 2013, at 10:23 AM, Nomi Harris <nlharris(a)lbl.gov> wrote: > Fabulous--thanks, Neal! Can you post the ubuntu image as well (http://bioseed.mcs.anl.gov/~dolson/kbase_20130611.vmdk.gz)? > > (Also, I will put the Feb downloads in the Older Releases section. I can do this, just wanted to let you know so we don't step on each other's changes.) > > What about the JavaScript libraries--do we have updates for those? Anyone know? > > Nomi > > On Jun 28, 2013, at 10:19 AM, Neal Conrad <nconrad(a)mcs.anl.gov> wrote: > >> Hi all, >> >> The dmg has been posted. http://kbase.us/developer-zone/downloads/ >> >> Thanks, >> Neal >> >> >> >> On Jun 28, 2013, at 12:09 PM, Nomi Harris wrote: >> >>> Hey, good news, I just talked to Neal and he's about to put the dmg and ubuntu image on kbase.us and then I can post the announcement and the release will be done! >>> >>> I had a question about communities_api--if it's missing from the dmg because of a Makefile problem, does that also mean that it won't be accessible in IRIS? And, if that's the case, should I remove Communities API from http://kbase.us/developer-zone/services/ or leave it there but put a note that it's not available in this release? >>> >>> Nomi >> >

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Re: [Release-team] Getting the release out
by Nomi Harris 28 Jun '13

28 Jun '13

Fabulous--thanks, Neal! Can you post the ubuntu image as well (http://bioseed.mcs.anl.gov/~dolson/kbase_20130611.vmdk.gz)? (Also, I will put the Feb downloads in the Older Releases section. I can do this, just wanted to let you know so we don't step on each other's changes.) What about the JavaScript libraries--do we have updates for those? Anyone know? Nomi On Jun 28, 2013, at 10:19 AM, Neal Conrad <nconrad(a)mcs.anl.gov> wrote: > Hi all, > > The dmg has been posted. http://kbase.us/developer-zone/downloads/ > > Thanks, > Neal > > > > On Jun 28, 2013, at 12:09 PM, Nomi Harris wrote: > >> Hey, good news, I just talked to Neal and he's about to put the dmg and ubuntu image on kbase.us and then I can post the announcement and the release will be done! >> >> I had a question about communities_api--if it's missing from the dmg because of a Makefile problem, does that also mean that it won't be accessible in IRIS? And, if that's the case, should I remove Communities API from http://kbase.us/developer-zone/services/ or leave it there but put a note that it's not available in this release? >> >> Nomi >

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Re: [Release-team] Getting the release out
by Neal Conrad 28 Jun '13

28 Jun '13

Hi all, The dmg has been posted. http://kbase.us/developer-zone/downloads/ Thanks, Neal On Jun 28, 2013, at 12:09 PM, Nomi Harris wrote: > Hey, good news, I just talked to Neal and he's about to put the dmg and ubuntu image on kbase.us and then I can post the announcement and the release will be done! > > I had a question about communities_api--if it's missing from the dmg because of a Makefile problem, does that also mean that it won't be accessible in IRIS? And, if that's the case, should I remove Communities API from http://kbase.us/developer-zone/services/ or leave it there but put a note that it's not available in this release? > > Nomi > > On Jun 27, 2013, at 5:56 PM, Nomi Harris <nlharris(a)lbl.gov> wrote: > >> Great, so do I. So it sounds like we can do the release tomorrow? >> Final steps: >> - Tom will give Neal the signal to put the new dmg and ubuntu image on kbase.us. Neal will also edit the Downloads page to reflect the new downloads. >> - Nomi will post the release announcement to the blog (with the change Dan suggested). >> >> That's pretty much it, right? The latest versions of the services have already been deployed to the public server? >> >> Are there any changes that need to be made to the Services page? For example, any new tutorials or API docs for services that didn't previously have them? I know of two such changes (see https://atlassian.kbase.us/browse/KBASE-148) >> >> I guess I should also fix some of the dead links on kbase.us (https://atlassian.kbase.us/browse/KBASE-149) before posting about the new release, since it's sort of embarrassing that we have links to Labs that no longer work. >> >> Nomi >> >> On Jun 27, 2013, at 3:42 PM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: >> >>> I agree with Bob >>> >>> >>> On Jun 27, 2013, at 4:18 PM, Robert Olson <olson(a)mcs.anl.gov> wrote: >>> >>>> I'm fine with it going out. It clearly wasn't a priority for the communities_api to be in back when I brought it up, so I don't think it should hold up the release. There is nothing like missing the boat to make you get in line early for the next one. >>>> >>>> On Jun 27, 2013, at 4:12 PM, Nomi Harris wrote: >>>> >>>>> I would love to see the release go out this week if only because it can then be "the June release" rather than becoming "the July release" (to be followed quickly by the August release). Assuming we get no response about fixing the communities_api so it can be included in the dmg, are we ready to go ahead and put the new dmg and ubuntu image up and announce the release? Or do we need a new dmg to test? >>>>> I think Miriam must be on vacation--I haven't seen any email from her in quite a while. And I know Tom is now away for at least a week. Should we wait until they're back? >>>>> Nomi >> >

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Re: [Release-team] Getting the release out
by Nomi Harris 28 Jun '13

28 Jun '13

Hey, good news, I just talked to Neal and he's about to put the dmg and ubuntu image on kbase.us and then I can post the announcement and the release will be done! I had a question about communities_api--if it's missing from the dmg because of a Makefile problem, does that also mean that it won't be accessible in IRIS? And, if that's the case, should I remove Communities API from http://kbase.us/developer-zone/services/ or leave it there but put a note that it's not available in this release? Nomi On Jun 27, 2013, at 5:56 PM, Nomi Harris <nlharris(a)lbl.gov> wrote: > Great, so do I. So it sounds like we can do the release tomorrow? > Final steps: > - Tom will give Neal the signal to put the new dmg and ubuntu image on kbase.us. Neal will also edit the Downloads page to reflect the new downloads. > - Nomi will post the release announcement to the blog (with the change Dan suggested). > > That's pretty much it, right? The latest versions of the services have already been deployed to the public server? > > Are there any changes that need to be made to the Services page? For example, any new tutorials or API docs for services that didn't previously have them? I know of two such changes (see https://atlassian.kbase.us/browse/KBASE-148) > > I guess I should also fix some of the dead links on kbase.us (https://atlassian.kbase.us/browse/KBASE-149) before posting about the new release, since it's sort of embarrassing that we have links to Labs that no longer work. > > Nomi > > On Jun 27, 2013, at 3:42 PM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > >> I agree with Bob >> >> >> On Jun 27, 2013, at 4:18 PM, Robert Olson <olson(a)mcs.anl.gov> wrote: >> >>> I'm fine with it going out. It clearly wasn't a priority for the communities_api to be in back when I brought it up, so I don't think it should hold up the release. There is nothing like missing the boat to make you get in line early for the next one. >>> >>> On Jun 27, 2013, at 4:12 PM, Nomi Harris wrote: >>> >>>> I would love to see the release go out this week if only because it can then be "the June release" rather than becoming "the July release" (to be followed quickly by the August release). Assuming we get no response about fixing the communities_api so it can be included in the dmg, are we ready to go ahead and put the new dmg and ubuntu image up and announce the release? Or do we need a new dmg to test? >>>> I think Miriam must be on vacation--I haven't seen any email from her in quite a while. And I know Tom is now away for at least a week. Should we wait until they're back? >>>> Nomi >

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Re: [Release-team] Getting the release out
by Nomi Harris 27 Jun '13

27 Jun '13

Great, so do I. So it sounds like we can do the release tomorrow? Final steps: - Tom will give Neal the signal to put the new dmg and ubuntu image on kbase.us. Neal will also edit the Downloads page to reflect the new downloads. - Nomi will post the release announcement to the blog (with the change Dan suggested). That's pretty much it, right? The latest versions of the services have already been deployed to the public server? Are there any changes that need to be made to the Services page? For example, any new tutorials or API docs for services that didn't previously have them? I know of two such changes (see https://atlassian.kbase.us/browse/KBASE-148) I guess I should also fix some of the dead links on kbase.us (https://atlassian.kbase.us/browse/KBASE-149) before posting about the new release, since it's sort of embarrassing that we have links to Labs that no longer work. Nomi On Jun 27, 2013, at 3:42 PM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > I agree with Bob > > > On Jun 27, 2013, at 4:18 PM, Robert Olson <olson(a)mcs.anl.gov> wrote: > >> I'm fine with it going out. It clearly wasn't a priority for the communities_api to be in back when I brought it up, so I don't think it should hold up the release. There is nothing like missing the boat to make you get in line early for the next one. >> >> On Jun 27, 2013, at 4:12 PM, Nomi Harris wrote: >> >>> I would love to see the release go out this week if only because it can then be "the June release" rather than becoming "the July release" (to be followed quickly by the August release). Assuming we get no response about fixing the communities_api so it can be included in the dmg, are we ready to go ahead and put the new dmg and ubuntu image up and announce the release? Or do we need a new dmg to test? >>> I think Miriam must be on vacation--I haven't seen any email from her in quite a while. And I know Tom is now away for at least a week. Should we wait until they're back? >>> Nomi

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Re: [Release-team] [JIRA] (KBASE-147) MK_CONFIG rule in Makefile.common fails with no such file or directory error
by Thomas Brettin 27 Jun '13

27 Jun '13

Right, that is what I was thinking, but wanted to talk to him before drawing any conclusions, can you talk to him? The dev_container makefile works fine when I run it on Chrises modules. t On Jun 27, 2013, at 6:03 PM, Dan Olson <dolson(a)mcs.anl.gov> wrote: > Michael may not have run a make before the make deploy. > > ----- Original Message ----- >> From: "Thomas Brettin" <brettint(a)gmail.com> >> To: "Nomi Harris" <nlharris(a)lbl.gov>, "Robert Olson" <olson(a)mcs.anl.gov> >> Cc: release-team(a)kbase.us, "Meghan M. Drake" <drakemm(a)ornl.gov> >> Sent: Thursday, June 27, 2013 5:52:33 PM >> Subject: Re: [Release-team] Fwd: [JIRA] (KBASE-147) MK_CONFIG rule in Makefile.common fails with no such file or >> directory error >> >> >> This is the wrong fix. It will not be committed to the main branch of >> dev_container. >> >> >> >> THe dev_container is under very tight change control that Bob and I >> have agreed upon. THere are three committers, and we have a change >> request system that we have been using for probably 6 months. I'll >> show Mike how to make the change. >> >> >> The mkcfg.pl script is wrapped as part of the build process to create >> a mkcfg script. There is something else wrong here. >> >> >> Tom >> >> >> >> >> >> >> On Jun 27, 2013, at 11:59 AM, Nomi Harris < nlharris(a)lbl.gov > wrote: >> >> >> >> It sounds like Michael Mundy fixed an issue in Makefile.common, but >> he didn't commit his change, either because he doesn't have write >> access to dev_container or because he knows that Tom prefers not to >> have random people make changes to that file. >> Who is the right person to assign this to? Tom is on vacation, and I >> know Bob O. is overloaded. I could commit the change but can't >> easily test that it works. >> >> >> Thanks, >> Nomi >> >> >> Begin forwarded message: >> >> >> >> From: "Michael Mundy (JIRA)" < help(a)kbase.us > >> >> Subject: [JIRA] (KBASE-147) MK_CONFIG rule in Makefile.common fails >> with no such file or directory error >> >> Date: June 27, 2013 7:15:25 AM PDT >> >> To: nlharris(a)lbl.gov >> >> >> >> >> >> Michael Mundy created BugKBASE-147 >> MK_CONFIG rule in Makefile.common fails with no such file or >> directory error >> Issue Type: BugBug >> Assignee: Meghan Drake >> Components: service >> Created: 27/Jun/13 9:14 AM >> Description: >> >> Line 32 of tools/Makefile.common has this rule: >> >> MK_CONFIG = $(TOOL_DIR)/mkcfg >> >> but in the tools directory the name of the script is mkcfg.pl. When >> running "make deploy" in KBaseFBAModeling that gives this error: >> >> /home/mmundy/kb/runtime/bin/perl ../../tools//mkcfg >> Can't open perl script "../../tools//mkcfg": No such file or >> directory >> make: *** [deploy-cfg] Error 2 >> >> I updated Makefile.common with the correct name of the script and the >> rule worked. >> >> I didn't see a dev_container service in the list to assign this >> issue. >> Project: KBase >> Priority: MinorMinor >> Reporter: Michael Mundy >> This message is automatically generated by JIRA. >> If you think it was sent incorrectly, please contact your JIRA >> administrators >> For more information on JIRA, see: >> http://www.atlassian.com/software/jira >> _______________________________________________ >> Release-team mailing list >> Release-team(a)lists.kbase.us >> https://lists.kbase.us/mailman/listinfo/release-team >> >> >> _______________________________________________ >> Release-team mailing list >> Release-team(a)lists.kbase.us >> https://lists.kbase.us/mailman/listinfo/release-team >> > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team

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Re: [Release-team] Fwd: [JIRA] (KBASE-147) MK_CONFIG rule in Makefile.common fails with no such file or directory error
by Dan Olson 27 Jun '13

27 Jun '13

Michael may not have run a make before the make deploy. ----- Original Message ----- > From: "Thomas Brettin" <brettint(a)gmail.com> > To: "Nomi Harris" <nlharris(a)lbl.gov>, "Robert Olson" <olson(a)mcs.anl.gov> > Cc: release-team(a)kbase.us, "Meghan M. Drake" <drakemm(a)ornl.gov> > Sent: Thursday, June 27, 2013 5:52:33 PM > Subject: Re: [Release-team] Fwd: [JIRA] (KBASE-147) MK_CONFIG rule in Makefile.common fails with no such file or > directory error > > > This is the wrong fix. It will not be committed to the main branch of > dev_container. > > > > THe dev_container is under very tight change control that Bob and I > have agreed upon. THere are three committers, and we have a change > request system that we have been using for probably 6 months. I'll > show Mike how to make the change. > > > The mkcfg.pl script is wrapped as part of the build process to create > a mkcfg script. There is something else wrong here. > > > Tom > > > > > > > On Jun 27, 2013, at 11:59 AM, Nomi Harris < nlharris(a)lbl.gov > wrote: > > > > It sounds like Michael Mundy fixed an issue in Makefile.common, but > he didn't commit his change, either because he doesn't have write > access to dev_container or because he knows that Tom prefers not to > have random people make changes to that file. > Who is the right person to assign this to? Tom is on vacation, and I > know Bob O. is overloaded. I could commit the change but can't > easily test that it works. > > > Thanks, > Nomi > > > Begin forwarded message: > > > > From: "Michael Mundy (JIRA)" < help(a)kbase.us > > > Subject: [JIRA] (KBASE-147) MK_CONFIG rule in Makefile.common fails > with no such file or directory error > > Date: June 27, 2013 7:15:25 AM PDT > > To: nlharris(a)lbl.gov > > > > > > Michael Mundy created BugKBASE-147 > MK_CONFIG rule in Makefile.common fails with no such file or > directory error > Issue Type: BugBug > Assignee: Meghan Drake > Components: service > Created: 27/Jun/13 9:14 AM > Description: > > Line 32 of tools/Makefile.common has this rule: > > MK_CONFIG = $(TOOL_DIR)/mkcfg > > but in the tools directory the name of the script is mkcfg.pl. When > running "make deploy" in KBaseFBAModeling that gives this error: > > /home/mmundy/kb/runtime/bin/perl ../../tools//mkcfg > Can't open perl script "../../tools//mkcfg": No such file or > directory > make: *** [deploy-cfg] Error 2 > > I updated Makefile.common with the correct name of the script and the > rule worked. > > I didn't see a dev_container service in the list to assign this > issue. > Project: KBase > Priority: MinorMinor > Reporter: Michael Mundy > This message is automatically generated by JIRA. > If you think it was sent incorrectly, please contact your JIRA > administrators > For more information on JIRA, see: > http://www.atlassian.com/software/jira > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team > > > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team >

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Re: [Release-team] Fwd: [JIRA] (KBASE-147) MK_CONFIG rule in Makefile.common fails with no such file or directory error
by Thomas Brettin 27 Jun '13

27 Jun '13

This is the wrong fix. It will not be committed to the main branch of dev_container. THe dev_container is under very tight change control that Bob and I have agreed upon. THere are three committers, and we have a change request system that we have been using for probably 6 months. I'll show Mike how to make the change. The mkcfg.pl script is wrapped as part of the build process to create a mkcfg script. There is something else wrong here. Tom On Jun 27, 2013, at 11:59 AM, Nomi Harris <nlharris(a)lbl.gov> wrote: > It sounds like Michael Mundy fixed an issue in Makefile.common, but he didn't commit his change, either because he doesn't have write access to dev_container or because he knows that Tom prefers not to have random people make changes to that file. > Who is the right person to assign this to? Tom is on vacation, and I know Bob O. is overloaded. I could commit the change but can't easily test that it works. > Thanks, > Nomi > > Begin forwarded message: > >> From: "Michael Mundy (JIRA)" <help(a)kbase.us> >> Subject: [JIRA] (KBASE-147) MK_CONFIG rule in Makefile.common fails with no such file or directory error >> Date: June 27, 2013 7:15:25 AM PDT >> To: nlharris(a)lbl.gov >> >> >> >> Michael Mundy created KBASE-147 >> MK_CONFIG rule in Makefile.common fails with no such file or directory error >> Issue Type: Bug >> Assignee: Meghan Drake >> Components: service >> Created: 27/Jun/13 9:14 AM >> Description: >> Line 32 of tools/Makefile.common has this rule: >> >> MK_CONFIG = $(TOOL_DIR)/mkcfg >> >> but in the tools directory the name of the script is mkcfg.pl. When running "make deploy" in KBaseFBAModeling that gives this error: >> >> /home/mmundy/kb/runtime/bin/perl ../../tools//mkcfg >> Can't open perl script "../../tools//mkcfg": No such file or directory >> make: *** [deploy-cfg] Error 2 >> >> I updated Makefile.common with the correct name of the script and the rule worked. >> >> I didn't see a dev_container service in the list to assign this issue. >> >> Project: KBase >> Priority: Minor >> Reporter: Michael Mundy >> This message is automatically generated by JIRA. >> If you think it was sent incorrectly, please contact your JIRA administrators >> For more information on JIRA, see: http://www.atlassian.com/software/jira > > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team

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Re: [Release-team] Getting the release out
by Thomas Brettin 27 Jun '13

27 Jun '13

I agree with Bob On Jun 27, 2013, at 4:18 PM, Robert Olson <olson(a)mcs.anl.gov> wrote: > I'm fine with it going out. It clearly wasn't a priority for the communities_api to be in back when I brought it up, so I don't think it should hold up the release. There is nothing like missing the boat to make you get in line early for the next one. > > On Jun 27, 2013, at 4:12 PM, Nomi Harris wrote: > >> I would love to see the release go out this week if only because it can then be "the June release" rather than becoming "the July release" (to be followed quickly by the August release). Assuming we get no response about fixing the communities_api so it can be included in the dmg, are we ready to go ahead and put the new dmg and ubuntu image up and announce the release? Or do we need a new dmg to test? >> I think Miriam must be on vacation--I haven't seen any email from her in quite a while. And I know Tom is now away for at least a week. Should we wait until they're back? >> Nomi >> >> _______________________________________________ >> Release-team mailing list >> Release-team(a)lists.kbase.us >> https://lists.kbase.us/mailman/listinfo/release-team > > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team

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Re: [Release-team] Getting the release out
by Robert Olson 27 Jun '13

27 Jun '13

I'm fine with it going out. It clearly wasn't a priority for the communities_api to be in back when I brought it up, so I don't think it should hold up the release. There is nothing like missing the boat to make you get in line early for the next one. On Jun 27, 2013, at 4:12 PM, Nomi Harris wrote: > I would love to see the release go out this week if only because it can then be "the June release" rather than becoming "the July release" (to be followed quickly by the August release). Assuming we get no response about fixing the communities_api so it can be included in the dmg, are we ready to go ahead and put the new dmg and ubuntu image up and announce the release? Or do we need a new dmg to test? > I think Miriam must be on vacation--I haven't seen any email from her in quite a while. And I know Tom is now away for at least a week. Should we wait until they're back? > Nomi > > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team

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