August 2013 - Release-team - mailman3.cels.anl.gov

Re: [Release-team] Release Team Telecon
by Land, Miriam L. 13 Aug '13

13 Aug '13

Here are my issue modules: Assembly - developers claims that fixes have been made but these have not been retested. Auth client and service - Not passing testing Communities_api - minor problems with 3 commands (in scripts but not in deployment). Mostly okay as is. FBA modeling - failing due to workspace deployment problems Functional ortholog predictor - COMMANDS file has been added since testing but the command returns a non-zero value ID Server - Issues with the command-line commands have been fixed since testing. Needs new tag before deployment Probabilistic Annotation - still failing testing Communities QC - still failing testing SHOCK - never passed deployment - hence never tested Miriam On 8/13/13 3:41 PM, "Nomi L. Harris" <nlharris(a)lbl.gov> wrote: >I'm at lunch but Mike is the tech doc lead. Feel free to have the meeting >without me. I pretty much said my piece in my email last night. > Nomi > >Sent from my iPhone > >On Aug 13, 2013, at 12:26 PM, Dan Olson <dolson(a)mcs.anl.gov> wrote: > >> Ok.. I primarily wanted to make go over the outstanding issues. The >>cleared for production >> column is fairly empty. >> >> Nomi, when you get back, can you have a look. I think some may have >>been waiting on API doc checks? >> >> ----- Original Message ----- >>> From: "Miriam L. Land" <landml(a)ornl.gov> >>> To: "Dan Olson" <dolson(a)mcs.anl.gov>, release-team(a)kbase.us >>> Sent: Tuesday, August 13, 2013 2:23:58 PM >>> Subject: Re: [Release-team] Release Team Telecon >>> >>> Nomi went to lunch. >>> >>> >>> On 8/13/13 3:22 PM, "Dan Olson" <dolson(a)mcs.anl.gov> wrote: >>> >>>> Hi all, >>>> >>>> I apologize, I had a meeting that backed up to this that ran long.. >>>> >>>> Can we regroup? >>>> >>>> ----- Original Message ----- >>>>> From: "Miriam L. Land" <landml(a)ornl.gov> >>>>> To: brettin(a)mcs.anl.gov, "Dan Olson" <dolson(a)mcs.anl.gov> >>>>> Sent: Tuesday, August 13, 2013 2:04:00 PM >>>>> Subject: Re: Release Team Telecon >>>>> >>>>> Who is leading this meeting? >>>>> >>>>> Nomi, Mike, and Miriam are in attendance. >>>>> >>>>> From: brettin(a)mcs.anl.gov<mailto:[email protected]> >>>>> When: 3:00 PM - 3:45 PM August 13, 2013 >>>>> Subject: Release Team Telecon >>>>> Location: 888-850-4523, passcode: 416791, leader passcode (Dan >>>>> only) >>>>> 4167913 >>>>> >>>>> >>>>> The following is a new meeting request: >>>>> Subject: Release Team Telecon >>>>> Organizer: brettin(a)mcs.anl.gov<mailto:[email protected]> >>>>> Sent By: "India S. Gordon" >>>>> <igordon(a)cels.anl.gov<mailto:[email protected]>> >>>>> Location: 888-850-4523, passcode: 416791, leader passcode >>>>> (Dan >>>>> only) 4167913 >>>>> Time: Tuesday, August 13, 2013, 2:00:00 PM - 2:45:00 PM GMT >>>>> -06:00 >>>>> US/Canada Central >>>>> Invitees: >>>>> release-team(a)kbase.us<mailto:[email protected]> >>>>> *~*~*~*~*~*~*~*~*~* >>>> _______________________________________________ >>>> Release-team mailing list >>>> Release-team(a)lists.kbase.us >>>> https://lists.kbase.us/mailman/listinfo/release-team >> _______________________________________________ >> Release-team mailing list >> Release-team(a)lists.kbase.us >> https://lists.kbase.us/mailman/listinfo/release-team

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Re: [Release-team] Release Team Telecon
by Michael Sneddon 13 Aug '13

13 Aug '13

I can call in in a few minutes if you'd like, but really the only 2 tech doc issues remaining were in my last email. As for release notes, everything is compliant except for KBaseFBAModeling. I notified Chris and am waiting a response. I'm not sure who makes the final cleared for production call. -michael On Tue, Aug 13, 2013 at 12:41 PM, Nomi L. Harris <nlharris(a)lbl.gov> wrote: > I'm at lunch but Mike is the tech doc lead. Feel free to have the meeting > without me. I pretty much said my piece in my email last night. > Nomi > > Sent from my iPhone > > On Aug 13, 2013, at 12:26 PM, Dan Olson <dolson(a)mcs.anl.gov> wrote: > > > Ok.. I primarily wanted to make go over the outstanding issues. The > cleared for production > > column is fairly empty. > > > > Nomi, when you get back, can you have a look. I think some may have > been waiting on API doc checks? > > > > ----- Original Message ----- > >> From: "Miriam L. Land" <landml(a)ornl.gov> > >> To: "Dan Olson" <dolson(a)mcs.anl.gov>, release-team(a)kbase.us > >> Sent: Tuesday, August 13, 2013 2:23:58 PM > >> Subject: Re: [Release-team] Release Team Telecon > >> > >> Nomi went to lunch. > >> > >> > >> On 8/13/13 3:22 PM, "Dan Olson" <dolson(a)mcs.anl.gov> wrote: > >> > >>> Hi all, > >>> > >>> I apologize, I had a meeting that backed up to this that ran long.. > >>> > >>> Can we regroup? > >>> > >>> ----- Original Message ----- > >>>> From: "Miriam L. Land" <landml(a)ornl.gov> > >>>> To: brettin(a)mcs.anl.gov, "Dan Olson" <dolson(a)mcs.anl.gov> > >>>> Sent: Tuesday, August 13, 2013 2:04:00 PM > >>>> Subject: Re: Release Team Telecon > >>>> > >>>> Who is leading this meeting? > >>>> > >>>> Nomi, Mike, and Miriam are in attendance. > >>>> > >>>> From: brettin(a)mcs.anl.gov<mailto:[email protected]> > >>>> When: 3:00 PM - 3:45 PM August 13, 2013 > >>>> Subject: Release Team Telecon > >>>> Location: 888-850-4523, passcode: 416791, leader passcode (Dan > >>>> only) > >>>> 4167913 > >>>> > >>>> > >>>> The following is a new meeting request: > >>>> Subject: Release Team Telecon > >>>> Organizer: brettin(a)mcs.anl.gov<mailto:[email protected]> > >>>> Sent By: "India S. Gordon" > >>>> <igordon(a)cels.anl.gov<mailto:[email protected]>> > >>>> Location: 888-850-4523, passcode: 416791, leader passcode > >>>> (Dan > >>>> only) 4167913 > >>>> Time: Tuesday, August 13, 2013, 2:00:00 PM - 2:45:00 PM GMT > >>>> -06:00 > >>>> US/Canada Central > >>>> Invitees: > >>>> release-team(a)kbase.us<mailto:[email protected]> > >>>> *~*~*~*~*~*~*~*~*~* > >>> _______________________________________________ > >>> Release-team mailing list > >>> Release-team(a)lists.kbase.us > >>> https://lists.kbase.us/mailman/listinfo/release-team > > _______________________________________________ > > Release-team mailing list > > Release-team(a)lists.kbase.us > > https://lists.kbase.us/mailman/listinfo/release-team > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team >

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Re: [Release-team] Release Team Telecon
by Nomi L. Harris 13 Aug '13

13 Aug '13

I'm at lunch but Mike is the tech doc lead. Feel free to have the meeting without me. I pretty much said my piece in my email last night. Nomi Sent from my iPhone On Aug 13, 2013, at 12:26 PM, Dan Olson <dolson(a)mcs.anl.gov> wrote: > Ok.. I primarily wanted to make go over the outstanding issues. The cleared for production > column is fairly empty. > > Nomi, when you get back, can you have a look. I think some may have been waiting on API doc checks? > > ----- Original Message ----- >> From: "Miriam L. Land" <landml(a)ornl.gov> >> To: "Dan Olson" <dolson(a)mcs.anl.gov>, release-team(a)kbase.us >> Sent: Tuesday, August 13, 2013 2:23:58 PM >> Subject: Re: [Release-team] Release Team Telecon >> >> Nomi went to lunch. >> >> >> On 8/13/13 3:22 PM, "Dan Olson" <dolson(a)mcs.anl.gov> wrote: >> >>> Hi all, >>> >>> I apologize, I had a meeting that backed up to this that ran long.. >>> >>> Can we regroup? >>> >>> ----- Original Message ----- >>>> From: "Miriam L. Land" <landml(a)ornl.gov> >>>> To: brettin(a)mcs.anl.gov, "Dan Olson" <dolson(a)mcs.anl.gov> >>>> Sent: Tuesday, August 13, 2013 2:04:00 PM >>>> Subject: Re: Release Team Telecon >>>> >>>> Who is leading this meeting? >>>> >>>> Nomi, Mike, and Miriam are in attendance. >>>> >>>> From: brettin(a)mcs.anl.gov<mailto:[email protected]> >>>> When: 3:00 PM - 3:45 PM August 13, 2013 >>>> Subject: Release Team Telecon >>>> Location: 888-850-4523, passcode: 416791, leader passcode (Dan >>>> only) >>>> 4167913 >>>> >>>> >>>> The following is a new meeting request: >>>> Subject: Release Team Telecon >>>> Organizer: brettin(a)mcs.anl.gov<mailto:[email protected]> >>>> Sent By: "India S. Gordon" >>>> <igordon(a)cels.anl.gov<mailto:[email protected]>> >>>> Location: 888-850-4523, passcode: 416791, leader passcode >>>> (Dan >>>> only) 4167913 >>>> Time: Tuesday, August 13, 2013, 2:00:00 PM - 2:45:00 PM GMT >>>> -06:00 >>>> US/Canada Central >>>> Invitees: >>>> release-team(a)kbase.us<mailto:[email protected]> >>>> *~*~*~*~*~*~*~*~*~* >>> _______________________________________________ >>> Release-team mailing list >>> Release-team(a)lists.kbase.us >>> https://lists.kbase.us/mailman/listinfo/release-team > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team

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Re: [Release-team] Release Team Telecon
by Michael Sneddon 13 Aug '13

13 Aug '13

I just did a second sweep over the API docs and updated the spreadsheet about an hour ago in the 'pass final doc qc' column. Everything is a go in regards to tech docs except for two services. "communities_qc" was all good at the beginning of the build, but this morning is now giving a 404 error here: http://140.221.84.191/services/docs/communities_qc/ The docs do look properly deployed to webroot on the test server... "search" does not have any API docs appearing here: http://140.221.84.191/services/docs/search/ I was under the impression that search was a bit of a custom deployment, so this may be ok. I also know that it only has a REST api, not the typical typespec API, so I'm not sure how we want to handle this. -michael On Tue, Aug 13, 2013 at 12:26 PM, Dan Olson <dolson(a)mcs.anl.gov> wrote: > Ok.. I primarily wanted to make go over the outstanding issues. The > cleared for production > column is fairly empty. > > Nomi, when you get back, can you have a look. I think some may have been > waiting on API doc checks? > > ----- Original Message ----- > > From: "Miriam L. Land" <landml(a)ornl.gov> > > To: "Dan Olson" <dolson(a)mcs.anl.gov>, release-team(a)kbase.us > > Sent: Tuesday, August 13, 2013 2:23:58 PM > > Subject: Re: [Release-team] Release Team Telecon > > > > Nomi went to lunch. > > > > > > On 8/13/13 3:22 PM, "Dan Olson" <dolson(a)mcs.anl.gov> wrote: > > > > >Hi all, > > > > > >I apologize, I had a meeting that backed up to this that ran long.. > > > > > >Can we regroup? > > > > > >----- Original Message ----- > > >> From: "Miriam L. Land" <landml(a)ornl.gov> > > >> To: brettin(a)mcs.anl.gov, "Dan Olson" <dolson(a)mcs.anl.gov> > > >> Sent: Tuesday, August 13, 2013 2:04:00 PM > > >> Subject: Re: Release Team Telecon > > >> > > >> Who is leading this meeting? > > >> > > >> Nomi, Mike, and Miriam are in attendance. > > >> > > >> From: brettin(a)mcs.anl.gov<mailto:[email protected]> > > >> When: 3:00 PM - 3:45 PM August 13, 2013 > > >> Subject: Release Team Telecon > > >> Location: 888-850-4523, passcode: 416791, leader passcode (Dan > > >> only) > > >> 4167913 > > >> > > >> > > >> The following is a new meeting request: > > >> Subject: Release Team Telecon > > >> Organizer: brettin(a)mcs.anl.gov<mailto:[email protected]> > > >> Sent By: "India S. Gordon" > > >> <igordon(a)cels.anl.gov<mailto:[email protected]>> > > >> Location: 888-850-4523, passcode: 416791, leader passcode > > >> (Dan > > >> only) 4167913 > > >> Time: Tuesday, August 13, 2013, 2:00:00 PM - 2:45:00 PM GMT > > >> -06:00 > > >> US/Canada Central > > >> Invitees: > > >> release-team(a)kbase.us<mailto:[email protected]> > > >> *~*~*~*~*~*~*~*~*~* > > >> > > >> > > >_______________________________________________ > > >Release-team mailing list > > >Release-team(a)lists.kbase.us > > >https://lists.kbase.us/mailman/listinfo/release-team > > > > > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team >

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Re: [Release-team] Release Team Telecon
by Dan Olson 13 Aug '13

13 Aug '13

Ok.. I primarily wanted to make go over the outstanding issues. The cleared for production column is fairly empty. Nomi, when you get back, can you have a look. I think some may have been waiting on API doc checks? ----- Original Message ----- > From: "Miriam L. Land" <landml(a)ornl.gov> > To: "Dan Olson" <dolson(a)mcs.anl.gov>, release-team(a)kbase.us > Sent: Tuesday, August 13, 2013 2:23:58 PM > Subject: Re: [Release-team] Release Team Telecon > > Nomi went to lunch. > > > On 8/13/13 3:22 PM, "Dan Olson" <dolson(a)mcs.anl.gov> wrote: > > >Hi all, > > > >I apologize, I had a meeting that backed up to this that ran long.. > > > >Can we regroup? > > > >----- Original Message ----- > >> From: "Miriam L. Land" <landml(a)ornl.gov> > >> To: brettin(a)mcs.anl.gov, "Dan Olson" <dolson(a)mcs.anl.gov> > >> Sent: Tuesday, August 13, 2013 2:04:00 PM > >> Subject: Re: Release Team Telecon > >> > >> Who is leading this meeting? > >> > >> Nomi, Mike, and Miriam are in attendance. > >> > >> From: brettin(a)mcs.anl.gov<mailto:[email protected]> > >> When: 3:00 PM - 3:45 PM August 13, 2013 > >> Subject: Release Team Telecon > >> Location: 888-850-4523, passcode: 416791, leader passcode (Dan > >> only) > >> 4167913 > >> > >> > >> The following is a new meeting request: > >> Subject: Release Team Telecon > >> Organizer: brettin(a)mcs.anl.gov<mailto:[email protected]> > >> Sent By: "India S. Gordon" > >> <igordon(a)cels.anl.gov<mailto:[email protected]>> > >> Location: 888-850-4523, passcode: 416791, leader passcode > >> (Dan > >> only) 4167913 > >> Time: Tuesday, August 13, 2013, 2:00:00 PM - 2:45:00 PM GMT > >> -06:00 > >> US/Canada Central > >> Invitees: > >> release-team(a)kbase.us<mailto:[email protected]> > >> *~*~*~*~*~*~*~*~*~* > >> > >> > >_______________________________________________ > >Release-team mailing list > >Release-team(a)lists.kbase.us > >https://lists.kbase.us/mailman/listinfo/release-team > >

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Re: [Release-team] Release Team Telecon
by Land, Miriam L. 13 Aug '13

13 Aug '13

Nomi went to lunch. On 8/13/13 3:22 PM, "Dan Olson" <dolson(a)mcs.anl.gov> wrote: >Hi all, > >I apologize, I had a meeting that backed up to this that ran long.. > >Can we regroup? > >----- Original Message ----- >> From: "Miriam L. Land" <landml(a)ornl.gov> >> To: brettin(a)mcs.anl.gov, "Dan Olson" <dolson(a)mcs.anl.gov> >> Sent: Tuesday, August 13, 2013 2:04:00 PM >> Subject: Re: Release Team Telecon >> >> Who is leading this meeting? >> >> Nomi, Mike, and Miriam are in attendance. >> >> From: brettin(a)mcs.anl.gov<mailto:[email protected]> >> When: 3:00 PM - 3:45 PM August 13, 2013 >> Subject: Release Team Telecon >> Location: 888-850-4523, passcode: 416791, leader passcode (Dan only) >> 4167913 >> >> >> The following is a new meeting request: >> Subject: Release Team Telecon >> Organizer: brettin(a)mcs.anl.gov<mailto:[email protected]> >> Sent By: "India S. Gordon" >> <igordon(a)cels.anl.gov<mailto:[email protected]>> >> Location: 888-850-4523, passcode: 416791, leader passcode (Dan >> only) 4167913 >> Time: Tuesday, August 13, 2013, 2:00:00 PM - 2:45:00 PM GMT -06:00 >> US/Canada Central >> Invitees: release-team(a)kbase.us<mailto:[email protected]> >> *~*~*~*~*~*~*~*~*~* >> >> >_______________________________________________ >Release-team mailing list >Release-team(a)lists.kbase.us >https://lists.kbase.us/mailman/listinfo/release-team

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Re: [Release-team] Release Team Telecon
by Dan Olson 13 Aug '13

13 Aug '13

Hi all, I apologize, I had a meeting that backed up to this that ran long.. Can we regroup? ----- Original Message ----- > From: "Miriam L. Land" <landml(a)ornl.gov> > To: brettin(a)mcs.anl.gov, "Dan Olson" <dolson(a)mcs.anl.gov> > Sent: Tuesday, August 13, 2013 2:04:00 PM > Subject: Re: Release Team Telecon > > Who is leading this meeting? > > Nomi, Mike, and Miriam are in attendance. > > From: brettin(a)mcs.anl.gov<mailto:[email protected]> > When: 3:00 PM - 3:45 PM August 13, 2013 > Subject: Release Team Telecon > Location: 888-850-4523, passcode: 416791, leader passcode (Dan only) > 4167913 > > > The following is a new meeting request: > Subject: Release Team Telecon > Organizer: brettin(a)mcs.anl.gov<mailto:[email protected]> > Sent By: "India S. Gordon" > <igordon(a)cels.anl.gov<mailto:[email protected]>> > Location: 888-850-4523, passcode: 416791, leader passcode (Dan > only) 4167913 > Time: Tuesday, August 13, 2013, 2:00:00 PM - 2:45:00 PM GMT -06:00 > US/Canada Central > Invitees: release-team(a)kbase.us<mailto:[email protected]> > *~*~*~*~*~*~*~*~*~* > >

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Release Team Telecon
by brettin＠mcs.anl.gov 13 Aug '13

13 Aug '13

The following is a new meeting request: Subject: Release Team Telecon Organizer: brettin(a)mcs.anl.gov Sent By: "India S. Gordon" <igordon(a)cels.anl.gov> Location: 888-850-4523, passcode: 416791, leader passcode (Dan only) 4167913 Time: Tuesday, August 13, 2013, 2:00:00 PM - 2:45:00 PM GMT -06:00 US/Canada Central Invitees: release-team(a)kbase.us *~*~*~*~*~*~*~*~*~*

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Re: [Release-team] Status of initial tech doc testing
by Dan Olson 12 Aug '13

12 Aug '13

Ahh, I see. The purpose of release notes is to document updates since the last release. Since there hasn't been any changes in the code, there are no updates, so we don't need to worry about the lack of release nodes. The lack of a full test is somewhat problematic. Modules that weren't tested may have been dependent on change made in other, updated modules. I expect once we have some automated testing system in place, we will be able to easily do this. Until then opportunistically rerunning tests on modules that aren't in scope for a build seems like a good idea. ----- Original Message ----- > From: "Nomi Harris" <nlharris(a)lbl.gov> > To: "Dan Olson" <dolson(a)mcs.anl.gov> > Cc: release-team(a)kbase.us > Sent: Monday, August 12, 2013 1:05:16 AM > Subject: Re: [Release-team] Status of initial tech doc testing > > > On Aug 11, 2013, at 10:53 PM, Dan Olson <dolson(a)mcs.anl.gov> wrote: > > I'm not sure I understand.. Are you saying the dmg itself is a > > service? > > No, that's not what I meant. > > > We're going to release everything that was tagged and tested this > > time around, along > > with anything that has ever been tested and released. However the > > modules that > > were not tested during this build will be released as the last > > tagged version. > > Right...but some modules didn't have release notes last time and > aren't "in" this release--so we didn't check for release notes--yet > they are still being released in the dmg/IRIS (as the last tagged > version), having managed to avoid being called on the release notes > requirement. An example of this would be feature_selection (or is > that not in the dmg or IRIS?) > > Not a big deal, just something to clean up at some point. I don't > think there are many modules that fall into that category. > > Nomi > > > > > ----- Original Message ----- > >> From: "Nomi Harris" <nlharris(a)lbl.gov> > >> To: release-team(a)kbase.us > >> Sent: Monday, August 12, 2013 12:47:02 AM > >> Subject: Re: [Release-team] Status of initial tech doc testing > >> > >> > >> > >> > >> It occurred to me, if we're creating a new dmg and new IRIS, then > >> we're releasing services that weren't "in" this release, aren't > >> we? > >> So they weren't tested or checked for API docs or release notes, > >> but > >> they get released anyway? Am I missing something here about what > >> it > >> means to be "in" a release? > >> > >> > >> Update on API docs (for services "in" this release): > >> > >> > >> On Aug 9, 2013, at 9:55 AM, Nomi Harris < nlharris(a)lbl.gov > > >> wrote: > >> > >> > >> > >> > >> > >> Thanks. expression still has an extra webroot that needs to be > >> removed. Now fixed > >> > >> > >> > >> > >> > >> > >> Most of the modules now have API docs in the right place. The only > >> exceptions: > >> functional_ortholog_predictor (no dir in > >> http://140.221.84.191/services/docs/ ) (is fine, I just looked in > >> the wrong place the first time) > >> > >> > >> > >> > >> > >> > >> assembly: No obvious API doc in > >> http://140.221.84.191/services/docs/assembly/ > >> seems to have CLI documentation but not API > >> > >> > >> > >> > >> > >> matR: has dir but no API doc Still no API doc > >> > >> > >> > >> > >> > >> > >> shock_service: there is a "shock_store" (empty) directory in > >> http://140.221.84.191/services/docs/ but no shock dir. Maybe a > >> Makefile problem? This is still the case > >> > >> > >> > >> > >> > >> > >> typecomp: Has there been a decision that it doesn't need API docs > >> since it's for internal use? Seems like it would still be useful > >> to > >> have API docs for the use of internal people. I agree with this. > >> :-) > >> > >> > >> As for the release notes, almost all the developers have now > >> created > >> or updated them, so yay! The only two services that are "in" this > >> release and not just internal or dependencies, that lack > >> up-to-date > >> release notes, are: > >> KBaseFBAModeling [but I kind of feel sorry for that module--it had > >> a > >> hard day today, what with unexpectedly having its lib and docs > >> dirs > >> removed] > >> Workspace service > >> > >> > >> Nomi > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> On Aug 8, 2013, at 9:31 AM, Shane Canon < scanon(a)lbl.gov > wrote: > >> > >> > >> > >> > >> > >> > >> I fixed auth and expression. > >> > >> > >> --S > >> > >> > >> On Aug 8, 2013, at 9:22 AM, Nomi Harris < nlharris(a)lbl.gov > > >> wrote: > >> > >> > >> > >> > >> > >> On Aug 7, 2013, at 7:58 PM, Michael Sneddon < mwsneddon(a)lbl.gov > > >> wrote: > >> > >> > >> > >> Nearly all of the services that have been deployed passed the > >> initial > >> doc testing. > >> > >> > >> The two exceptions are 'sim_service', which is not deploying API > >> docs > >> at all (needs to add the proper doc generation and deployment code > >> to its Makefile), and 'search', which was deployed to a test VM > >> that > >> I couldn't find (not available from t1 by ssh search ??), and has > >> no > >> docs appearing here: http://140.221.84.191/services/docs/search/ > >> > >> > >> Bob fixed the Makefile and the API doc should appear when > >> sim_service > >> is redeployed. > >> > >> > >> > >> > >> In addition, several modules do have proper documentation that > >> seems > >> to be properly deployed, but is not appearing here: > >> http://140.221.84.191/services/docs . It's probably just a proxy > >> issue, but here is the list of those modules: > >> > >> > >> auth_service The doc now appears where it should but there is an > >> extra self-referential webroot link in > >> http://140.221.84.191/services/docs/authorization_server/ so that > >> you can go to, for example, > >> http://140.221.84.191/services/docs/authorization_server/webroot/webroot/we… > >> > >> > >> > >> > >> cluster_service > >> Now ok > >> > >> > >> > >> expression Almost: the doc is at > >> http://140.221.84.191/services/docs/expression/webroot/ExpressionServices.h… > >> rather than > >> http://140.221.84.191/services/docs/expression/ExpressionServices.html > >> as it should. > >> > >> > >> > >> > >> KBaseFBAModeling Now ok, at > >> http://140.221.84.191/services/docs/fbaModelServices/fbaModelServices.html > >> > >> > >> > >> > >> plant_expression_service Now ok at > >> http://140.221.84.191/services/docs/PlantExpressionService/PlantExpressionS… > >> > >> _______________________________________________ > >> Release-team mailing list > >> Release-team(a)lists.kbase.us > >> https://lists.kbase.us/mailman/listinfo/release-team > >> > >> > >> > >> > >> _______________________________________________ > >> Release-team mailing list > >> Release-team(a)lists.kbase.us > >> https://lists.kbase.us/mailman/listinfo/release-team > >> > >

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Re: [Release-team] Status of initial tech doc testing
by Nomi Harris 12 Aug '13

12 Aug '13

On Aug 11, 2013, at 10:53 PM, Dan Olson <dolson(a)mcs.anl.gov> wrote: > I'm not sure I understand.. Are you saying the dmg itself is a service? No, that's not what I meant. > We're going to release everything that was tagged and tested this time around, along > with anything that has ever been tested and released. However the modules that > were not tested during this build will be released as the last tagged version. Right...but some modules didn't have release notes last time and aren't "in" this release--so we didn't check for release notes--yet they are still being released in the dmg/IRIS (as the last tagged version), having managed to avoid being called on the release notes requirement. An example of this would be feature_selection (or is that not in the dmg or IRIS?) Not a big deal, just something to clean up at some point. I don't think there are many modules that fall into that category. Nomi > > ----- Original Message ----- >> From: "Nomi Harris" <nlharris(a)lbl.gov> >> To: release-team(a)kbase.us >> Sent: Monday, August 12, 2013 12:47:02 AM >> Subject: Re: [Release-team] Status of initial tech doc testing >> >> >> >> >> It occurred to me, if we're creating a new dmg and new IRIS, then >> we're releasing services that weren't "in" this release, aren't we? >> So they weren't tested or checked for API docs or release notes, but >> they get released anyway? Am I missing something here about what it >> means to be "in" a release? >> >> >> Update on API docs (for services "in" this release): >> >> >> On Aug 9, 2013, at 9:55 AM, Nomi Harris < nlharris(a)lbl.gov > wrote: >> >> >> >> >> >> Thanks. expression still has an extra webroot that needs to be >> removed. Now fixed >> >> >> >> >> >> >> Most of the modules now have API docs in the right place. The only >> exceptions: >> functional_ortholog_predictor (no dir in >> http://140.221.84.191/services/docs/ ) (is fine, I just looked in >> the wrong place the first time) >> >> >> >> >> >> >> assembly: No obvious API doc in >> http://140.221.84.191/services/docs/assembly/ >> seems to have CLI documentation but not API >> >> >> >> >> >> matR: has dir but no API doc Still no API doc >> >> >> >> >> >> >> shock_service: there is a "shock_store" (empty) directory in >> http://140.221.84.191/services/docs/ but no shock dir. Maybe a >> Makefile problem? This is still the case >> >> >> >> >> >> >> typecomp: Has there been a decision that it doesn't need API docs >> since it's for internal use? Seems like it would still be useful to >> have API docs for the use of internal people. I agree with this. :-) >> >> >> As for the release notes, almost all the developers have now created >> or updated them, so yay! The only two services that are "in" this >> release and not just internal or dependencies, that lack up-to-date >> release notes, are: >> KBaseFBAModeling [but I kind of feel sorry for that module--it had a >> hard day today, what with unexpectedly having its lib and docs dirs >> removed] >> Workspace service >> >> >> Nomi >> >> >> >> >> >> >> >> >> >> >> On Aug 8, 2013, at 9:31 AM, Shane Canon < scanon(a)lbl.gov > wrote: >> >> >> >> >> >> >> I fixed auth and expression. >> >> >> --S >> >> >> On Aug 8, 2013, at 9:22 AM, Nomi Harris < nlharris(a)lbl.gov > wrote: >> >> >> >> >> >> On Aug 7, 2013, at 7:58 PM, Michael Sneddon < mwsneddon(a)lbl.gov > >> wrote: >> >> >> >> Nearly all of the services that have been deployed passed the initial >> doc testing. >> >> >> The two exceptions are 'sim_service', which is not deploying API docs >> at all (needs to add the proper doc generation and deployment code >> to its Makefile), and 'search', which was deployed to a test VM that >> I couldn't find (not available from t1 by ssh search ??), and has no >> docs appearing here: http://140.221.84.191/services/docs/search/ >> >> >> Bob fixed the Makefile and the API doc should appear when sim_service >> is redeployed. >> >> >> >> >> In addition, several modules do have proper documentation that seems >> to be properly deployed, but is not appearing here: >> http://140.221.84.191/services/docs . It's probably just a proxy >> issue, but here is the list of those modules: >> >> >> auth_service The doc now appears where it should but there is an >> extra self-referential webroot link in >> http://140.221.84.191/services/docs/authorization_server/ so that >> you can go to, for example, >> http://140.221.84.191/services/docs/authorization_server/webroot/webroot/we… >> >> >> >> >> cluster_service >> Now ok >> >> >> >> expression Almost: the doc is at >> http://140.221.84.191/services/docs/expression/webroot/ExpressionServices.h… >> rather than >> http://140.221.84.191/services/docs/expression/ExpressionServices.html >> as it should. >> >> >> >> >> KBaseFBAModeling Now ok, at >> http://140.221.84.191/services/docs/fbaModelServices/fbaModelServices.html >> >> >> >> >> plant_expression_service Now ok at >> http://140.221.84.191/services/docs/PlantExpressionService/PlantExpressionS… >> >> _______________________________________________ >> Release-team mailing list >> Release-team(a)lists.kbase.us >> https://lists.kbase.us/mailman/listinfo/release-team >> >> >> >> >> _______________________________________________ >> Release-team mailing list >> Release-team(a)lists.kbase.us >> https://lists.kbase.us/mailman/listinfo/release-team >>

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