October 2013 - Release-team - mailman3.cels.anl.gov

Re: [Release-team] [Kbase-devel] deployments next week
by Thomas Brettin 08 Oct '13

08 Oct '13

just added kkeller(a)lbl.gov From what I see, the release team is about a day behind schedule at this point in time. Tom On Oct 8, 2013, at 1:25 PM, Keith Keller <kkeller(a)lbl.gov> wrote: > Hi Tom, > > I am sorry I did not reply sooner, I've been out of town on vacation. > > On Mon, Oct 7, 2013 at 7:35 AM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: >> >> We are starting our final deployment push today. I haven't heard from many of the module owners. Please let us know. This week we will try to follow a tight schedule. The schedule is documented in the minor release punch list document (https://docs.google.com/document/d/1QxZtbKUtAp_7Dj6ArEEaQvUcyl92xn80PzIVm_K…) > > I don't seem to have access to this doc; I just requested it. But > Shane checked in with us on services to be redeployed, and I mentioned > to him that the protein_info service should be redeployed for the SAC. > (I don't think I have any other services that have had important > changes.) > > --keith > > -- > Keith Keller > kkeller(a)lbl.gov > Physical Biosciences Division, Lawrence Berkeley National Lab

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Re: [Release-team] [Kbase-devel] deployments next week
by Keith Keller 08 Oct '13

08 Oct '13

Hi Tom, I am sorry I did not reply sooner, I've been out of town on vacation. On Mon, Oct 7, 2013 at 7:35 AM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > > We are starting our final deployment push today. I haven't heard from many of the module owners. Please let us know. This week we will try to follow a tight schedule. The schedule is documented in the minor release punch list document (https://docs.google.com/document/d/1QxZtbKUtAp_7Dj6ArEEaQvUcyl92xn80PzIVm_K…) I don't seem to have access to this doc; I just requested it. But Shane checked in with us on services to be redeployed, and I mentioned to him that the protein_info service should be redeployed for the SAC. (I don't think I have any other services that have had important changes.) --keith -- Keith Keller kkeller(a)lbl.gov Physical Biosciences Division, Lawrence Berkeley National Lab

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Re: [Release-team] deploy.cfg for IRIS
by Dan Olson 08 Oct '13

08 Oct '13

There are actually a few versions floating around, which necessitated this group sanity-check. Thanks for the input, I'll get it updated. ----- Original Message ----- > From: "Michael Sneddon" <mwsneddon(a)lbl.gov> > To: "Dan Olson" <dolson(a)mcs.anl.gov> > Cc: release-team(a)kbase.us > Sent: Tuesday, October 8, 2013 11:30:29 AM > Subject: Re: [Release-team] deploy.cfg for IRIS > > > Hi Dan, > > > 'trees' should be added to the list, and 'prom_service' should still > be (temporarily) removed for now. > > > Was this list recently revised? Or is the config file not tracked in > git? I'm asking because at one point 'trees' was on this list, and > has been deployed with Iris for a while now. > > > Thanks, > -michael > > > > On Tue, Oct 8, 2013 at 8:09 AM, Dan Olson < dolson(a)mcs.anl.gov > > wrote: > > > Hi all, > > I'm working on deploying Iris today, and would like the group to spot > check my deploy.cfg > to ensure I have all the necessary modules included. > > Here is what I have: > > deploy-client = assembly, jnomics, genome_annotation, invocation, > kb_seed, kbapi_common, sim_service, typecomp, idserver, > genotype_phenotype_api, KBaseFBAModeling, workspace_service, phispy, > plant_expression_service, prom_service, translation, > communities_api, m5nr, communities_qc > deploy-service = invocation, genome_annotation, phispy > deploy-master = auth > > Let me know if you're aware of something that should be included in > Iris that isn't included here. > > ---- > Daniel Murphy-Olson > Systems Administrator > Mathematics & Computer Science Division > Argonne National Laboratory > 630-252-0055 > > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team > >

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Re: [Release-team] deploy.cfg for IRIS
by Michael Sneddon 08 Oct '13

08 Oct '13

Hi Dan, 'trees' should be added to the list, and 'prom_service' should still be (temporarily) removed for now. Was this list recently revised? Or is the config file not tracked in git? I'm asking because at one point 'trees' was on this list, and has been deployed with Iris for a while now. Thanks, -michael On Tue, Oct 8, 2013 at 8:09 AM, Dan Olson <dolson(a)mcs.anl.gov> wrote: > Hi all, > > I'm working on deploying Iris today, and would like the group to spot > check my deploy.cfg > to ensure I have all the necessary modules included. > > Here is what I have: > > deploy-client = assembly, jnomics, genome_annotation, invocation, kb_seed, > kbapi_common, sim_service, typecomp, idserver, genotype_phenotype_api, > KBaseFBAModeling, workspace_service, phispy, plant_expression_service, > prom_service, translation, communities_api, m5nr, communities_qc > deploy-service = invocation, genome_annotation, phispy > deploy-master = auth > > Let me know if you're aware of something that should be included in Iris > that isn't included here. > > ---- > Daniel Murphy-Olson > Systems Administrator > Mathematics & Computer Science Division > Argonne National Laboratory > 630-252-0055 > > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team >

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deploy.cfg for IRIS
by Dan Olson 08 Oct '13

08 Oct '13

Hi all, I'm working on deploying Iris today, and would like the group to spot check my deploy.cfg to ensure I have all the necessary modules included. Here is what I have: deploy-client = assembly, jnomics, genome_annotation, invocation, kb_seed, kbapi_common, sim_service, typecomp, idserver, genotype_phenotype_api, KBaseFBAModeling, workspace_service, phispy, plant_expression_service, prom_service, translation, communities_api, m5nr, communities_qc deploy-service = invocation, genome_annotation, phispy deploy-master = auth Let me know if you're aware of something that should be included in Iris that isn't included here. ---- Daniel Murphy-Olson Systems Administrator Mathematics & Computer Science Division Argonne National Laboratory 630-252-0055

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Re: [Release-team] [Kbase-devel] deployments next week
by Robert Olson 07 Oct '13

07 Oct '13

OK. I think I needed to move to that version to get a clean thrift build on the mac. --bob On Oct 7, 2013, at 11:47 AM, James Gurtowski wrote: > Yes it should deploy under 1.6. Though the latest version of thrift is required v.0.90. > > James > > On Monday, October 7, 2013, Robert Olson wrote: > I meant "relax" not "release". Gee, what is on our minds lately .. > > On Oct 7, 2013, at 11:30 AM, Robert Olson wrote: > > Does this release the java 1.7 requirement? > > On Oct 7, 2013, at 9:38 AM, James Gurtowski wrote: > > Please deploy Jnomics, I think we figured everything out last week. Let me know if there are issues though. > > Thanks, > James > > > On Mon, Oct 7, 2013 at 10:35 AM, Thomas Brettin <brettin(a)mcs.anl.gov<mailto:[email protected]>> wrote: > Hi again, > > We are starting our final deployment push today. I haven't heard from many of the module owners. Please let us know. This week we will try to follow a tight schedule. The schedule is documented in the minor release punch list document (https://docs.google.com/document/d/1QxZtbKUtAp_7Dj6ArEEaQvUcyl92xn80PzIVm_K…) > > Because of the lack of any variance on the deadline, we're going to try to wrap testing up COB Wednesday and start the construction of the dmg, ubuntu image, and IRIS on Thursday. > > Also happing this week, starting today is the cut-over of the central store release candidate to production. > > Every attempt will be made to accommodate everyone, but our deadline is firm. > > I will open up a Google hangout today around noon for folks to connect to. > > Finally, you should not assume that your module is on the deploy list (though it probably is). Please email me, cc the release-team(a)lists.kbase.us<mailto:[email protected]>. > > Tom > > > On Oct 5, 2013, at 6:47 PM, Thomas Brettin <brettin(a)mcs.anl.gov<mailto:[email protected]>> wrote: > > > Hi Everyone, > > > > Please let me know if you want your service module deployed next week. We will have to follow a rigid schedule. Deployments will take place. Testing will have to be concluded by COB wednesday. On thursday, we'll start the last Iris deployment, start on the ubuntu image and the dmg. > > > > Thanks > > Tom > > _______________________________________________ > Kbase-devel mailing list > Kbase-devel(a)lists.kbase.us<mailto:[email protected]> > https://lists.kbase.us/mailman/listinfo/kbase-devel > > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us<mailto:[email protected]> > https://lists.kbase.us/mailman/listinfo/release-team > > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us<mailto:[email protected]> > https://lists.kbase.us/mailman/listinfo/release-team >

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Re: [Release-team] [Kbase-devel] deployments next week
by James Gurtowski 07 Oct '13

07 Oct '13

Yes it should deploy under 1.6. Though the latest version of thrift is required v.0.90. James On Monday, October 7, 2013, Robert Olson wrote: > I meant "relax" not "release". Gee, what is on our minds lately .. > > On Oct 7, 2013, at 11:30 AM, Robert Olson wrote: > > Does this release the java 1.7 requirement? > > On Oct 7, 2013, at 9:38 AM, James Gurtowski wrote: > > Please deploy Jnomics, I think we figured everything out last week. Let me > know if there are issues though. > > Thanks, > James > > > On Mon, Oct 7, 2013 at 10:35 AM, Thomas Brettin <brettin(a)mcs.anl.gov<javascript:;> > <mailto:[email protected] <javascript:;>>> wrote: > Hi again, > > We are starting our final deployment push today. I haven't heard from many > of the module owners. Please let us know. This week we will try to follow a > tight schedule. The schedule is documented in the minor release punch list > document ( > https://docs.google.com/document/d/1QxZtbKUtAp_7Dj6ArEEaQvUcyl92xn80PzIVm_K… > ). > > Because of the lack of any variance on the deadline, we're going to try to > wrap testing up COB Wednesday and start the construction of the dmg, ubuntu > image, and IRIS on Thursday. > > Also happing this week, starting today is the cut-over of the central > store release candidate to production. > > Every attempt will be made to accommodate everyone, but our deadline is > firm. > > I will open up a Google hangout today around noon for folks to connect to. > > Finally, you should not assume that your module is on the deploy list > (though it probably is). Please email me, cc the > release-team(a)lists.kbase.us <javascript:;><mailto: > release-team(a)lists.kbase.us <javascript:;>>. > > Tom > > > On Oct 5, 2013, at 6:47 PM, Thomas Brettin <brettin(a)mcs.anl.gov<javascript:;> > <mailto:[email protected] <javascript:;>>> wrote: > > > Hi Everyone, > > > > Please let me know if you want your service module deployed next week. > We will have to follow a rigid schedule. Deployments will take place. > Testing will have to be concluded by COB wednesday. On thursday, we'll > start the last Iris deployment, start on the ubuntu image and the dmg. > > > > Thanks > > Tom > > _______________________________________________ > Kbase-devel mailing list > Kbase-devel(a)lists.kbase.us <javascript:;><mailto: > Kbase-devel(a)lists.kbase.us <javascript:;>> > https://lists.kbase.us/mailman/listinfo/kbase-devel > > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us <javascript:;><mailto: > Release-team(a)lists.kbase.us <javascript:;>> > https://lists.kbase.us/mailman/listinfo/release-team > > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us <javascript:;><mailto: > Release-team(a)lists.kbase.us <javascript:;>> > https://lists.kbase.us/mailman/listinfo/release-team > >

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Re: [Release-team] [Kbase-devel] deployments next week
by Robert Olson 07 Oct '13

07 Oct '13

I meant "relax" not "release". Gee, what is on our minds lately .. On Oct 7, 2013, at 11:30 AM, Robert Olson wrote: > Does this release the java 1.7 requirement? > > On Oct 7, 2013, at 9:38 AM, James Gurtowski wrote: > >> Please deploy Jnomics, I think we figured everything out last week. Let me know if there are issues though. >> >> Thanks, >> James >> >> >> On Mon, Oct 7, 2013 at 10:35 AM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: >> Hi again, >> >> We are starting our final deployment push today. I haven't heard from many of the module owners. Please let us know. This week we will try to follow a tight schedule. The schedule is documented in the minor release punch list document (https://docs.google.com/document/d/1QxZtbKUtAp_7Dj6ArEEaQvUcyl92xn80PzIVm_K…) >> >> Because of the lack of any variance on the deadline, we're going to try to wrap testing up COB Wednesday and start the construction of the dmg, ubuntu image, and IRIS on Thursday. >> >> Also happing this week, starting today is the cut-over of the central store release candidate to production. >> >> Every attempt will be made to accommodate everyone, but our deadline is firm. >> >> I will open up a Google hangout today around noon for folks to connect to. >> >> Finally, you should not assume that your module is on the deploy list (though it probably is). Please email me, cc the release-team(a)lists.kbase.us. >> >> Tom >> >> >> On Oct 5, 2013, at 6:47 PM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: >> >> > Hi Everyone, >> > >> > Please let me know if you want your service module deployed next week. We will have to follow a rigid schedule. Deployments will take place. Testing will have to be concluded by COB wednesday. On thursday, we'll start the last Iris deployment, start on the ubuntu image and the dmg. >> > >> > Thanks >> > Tom >> >> _______________________________________________ >> Kbase-devel mailing list >> Kbase-devel(a)lists.kbase.us >> https://lists.kbase.us/mailman/listinfo/kbase-devel >> >> _______________________________________________ >> Release-team mailing list >> Release-team(a)lists.kbase.us >> https://lists.kbase.us/mailman/listinfo/release-team > > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team

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Re: [Release-team] [Kbase-devel] deployments next week
by Robert Olson 07 Oct '13

07 Oct '13

Does this release the java 1.7 requirement? On Oct 7, 2013, at 9:38 AM, James Gurtowski wrote: > Please deploy Jnomics, I think we figured everything out last week. Let me know if there are issues though. > > Thanks, > James > > > On Mon, Oct 7, 2013 at 10:35 AM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > Hi again, > > We are starting our final deployment push today. I haven't heard from many of the module owners. Please let us know. This week we will try to follow a tight schedule. The schedule is documented in the minor release punch list document (https://docs.google.com/document/d/1QxZtbKUtAp_7Dj6ArEEaQvUcyl92xn80PzIVm_K…) > > Because of the lack of any variance on the deadline, we're going to try to wrap testing up COB Wednesday and start the construction of the dmg, ubuntu image, and IRIS on Thursday. > > Also happing this week, starting today is the cut-over of the central store release candidate to production. > > Every attempt will be made to accommodate everyone, but our deadline is firm. > > I will open up a Google hangout today around noon for folks to connect to. > > Finally, you should not assume that your module is on the deploy list (though it probably is). Please email me, cc the release-team(a)lists.kbase.us. > > Tom > > > On Oct 5, 2013, at 6:47 PM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > > > Hi Everyone, > > > > Please let me know if you want your service module deployed next week. We will have to follow a rigid schedule. Deployments will take place. Testing will have to be concluded by COB wednesday. On thursday, we'll start the last Iris deployment, start on the ubuntu image and the dmg. > > > > Thanks > > Tom > > _______________________________________________ > Kbase-devel mailing list > Kbase-devel(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/kbase-devel > > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team

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Re: [Release-team] [Kbase-devel] deployments next week
by Fangfang Xia 07 Oct '13

07 Oct '13

Hi Tom, Could you put assembly service on the list? We will add Iris integration. We hope that part will be ready for testing by Tuesday noon. Thanks, Fangfang On Oct 7, 2013, at 9:35 AM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > Hi again, > > We are starting our final deployment push today. I haven't heard from many of the module owners. Please let us know. This week we will try to follow a tight schedule. The schedule is documented in the minor release punch list document (https://docs.google.com/document/d/1QxZtbKUtAp_7Dj6ArEEaQvUcyl92xn80PzIVm_K…) > > Because of the lack of any variance on the deadline, we're going to try to wrap testing up COB Wednesday and start the construction of the dmg, ubuntu image, and IRIS on Thursday. > > Also happing this week, starting today is the cut-over of the central store release candidate to production. > > Every attempt will be made to accommodate everyone, but our deadline is firm. > > I will open up a Google hangout today around noon for folks to connect to. > > Finally, you should not assume that your module is on the deploy list (though it probably is). Please email me, cc the release-team(a)lists.kbase.us. > > Tom > > > On Oct 5, 2013, at 6:47 PM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > >> Hi Everyone, >> >> Please let me know if you want your service module deployed next week. We will have to follow a rigid schedule. Deployments will take place. Testing will have to be concluded by COB wednesday. On thursday, we'll start the last Iris deployment, start on the ubuntu image and the dmg. >> >> Thanks >> Tom > > _______________________________________________ > Kbase-devel mailing list > Kbase-devel(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/kbase-devel

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