October 2013 - Release-team - mailman3.cels.anl.gov

Re: [Release-team] [Kbase-devel] deployments next week
by Thomas Brettin 07 Oct '13

07 Oct '13

Thanks James, I got it on the plan. t On Oct 7, 2013, at 9:38 AM, James Gurtowski <gurtowsk(a)cshl.edu> wrote: > Please deploy Jnomics, I think we figured everything out last week. Let me know if there are issues though. > > Thanks, > James > > > On Mon, Oct 7, 2013 at 10:35 AM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > Hi again, > > We are starting our final deployment push today. I haven't heard from many of the module owners. Please let us know. This week we will try to follow a tight schedule. The schedule is documented in the minor release punch list document (https://docs.google.com/document/d/1QxZtbKUtAp_7Dj6ArEEaQvUcyl92xn80PzIVm_K…) > > Because of the lack of any variance on the deadline, we're going to try to wrap testing up COB Wednesday and start the construction of the dmg, ubuntu image, and IRIS on Thursday. > > Also happing this week, starting today is the cut-over of the central store release candidate to production. > > Every attempt will be made to accommodate everyone, but our deadline is firm. > > I will open up a Google hangout today around noon for folks to connect to. > > Finally, you should not assume that your module is on the deploy list (though it probably is). Please email me, cc the release-team(a)lists.kbase.us. > > Tom > > > On Oct 5, 2013, at 6:47 PM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > > > Hi Everyone, > > > > Please let me know if you want your service module deployed next week. We will have to follow a rigid schedule. Deployments will take place. Testing will have to be concluded by COB wednesday. On thursday, we'll start the last Iris deployment, start on the ubuntu image and the dmg. > > > > Thanks > > Tom > > _______________________________________________ > Kbase-devel mailing list > Kbase-devel(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/kbase-devel >

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Re: [Release-team] [Kbase-devel] deployments next week
by James Gurtowski 07 Oct '13

07 Oct '13

Please deploy Jnomics, I think we figured everything out last week. Let me know if there are issues though. Thanks, James On Mon, Oct 7, 2013 at 10:35 AM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > Hi again, > > We are starting our final deployment push today. I haven't heard from many > of the module owners. Please let us know. This week we will try to follow a > tight schedule. The schedule is documented in the minor release punch list > document ( > https://docs.google.com/document/d/1QxZtbKUtAp_7Dj6ArEEaQvUcyl92xn80PzIVm_K… > ). > > Because of the lack of any variance on the deadline, we're going to try to > wrap testing up COB Wednesday and start the construction of the dmg, ubuntu > image, and IRIS on Thursday. > > Also happing this week, starting today is the cut-over of the central > store release candidate to production. > > Every attempt will be made to accommodate everyone, but our deadline is > firm. > > I will open up a Google hangout today around noon for folks to connect to. > > Finally, you should not assume that your module is on the deploy list > (though it probably is). Please email me, cc the > release-team(a)lists.kbase.us. > > Tom > > > On Oct 5, 2013, at 6:47 PM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > > > Hi Everyone, > > > > Please let me know if you want your service module deployed next week. > We will have to follow a rigid schedule. Deployments will take place. > Testing will have to be concluded by COB wednesday. On thursday, we'll > start the last Iris deployment, start on the ubuntu image and the dmg. > > > > Thanks > > Tom > > _______________________________________________ > Kbase-devel mailing list > Kbase-devel(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/kbase-devel >

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m5nr
by Shane Canon 04 Oct '13

04 Oct '13

FYI. m5nr should be deployed in production now. --Shane

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Re: [Release-team] jnomics
by Land, Miriam L. 04 Oct '13

04 Oct '13

It has not been part of a build since May. The test environment may be okay (untouched since May) but if it was deployed today, something might have changed. Miriam On 10/3/13 4:43 PM, "Thomas Brettin" <brettin(a)mcs.anl.gov> wrote: >I'm unable to deploy the jnomics service. I've asked Mike and James to >log on to the test host and look at it. > >Tom >_______________________________________________ >Release-team mailing list >Release-team(a)lists.kbase.us >https://lists.kbase.us/mailman/listinfo/release-team

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jnomics
by Thomas Brettin 03 Oct '13

03 Oct '13

I'm unable to deploy the jnomics service. I've asked Mike and James to log on to the test host and look at it. Tom

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Re: [Release-team] help with classpath
by James Gurtowski 03 Oct '13

03 Oct '13

Sounds good. Thanks Tom James On Thu, Oct 3, 2013 at 9:55 AM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > Ok, the reason we're having problems with the master branch and the exact > commit to pull from is as far as I can tell: > > 1) you are asking me to pull from the head of master. > 2) the head of master has not been tested. > 3) because the head of master has not been tested, there is no tag on it. > 4) because there is no tag on it, the IRIS deploy process is pulling the > last tagged commit. > > I'll go ahead and tag the head of master, and run it through the test > process. If it passes the service test process, then I'll add it to the > iris deployment. > > Sound good? > > > On Oct 3, 2013, at 6:29 AM, Thomas Brettin <brettin(a)mcs.anl.gov<mailto: > brettin(a)mcs.anl.gov>> wrote: > > ugh! > > I'll check, thanks for helping. > > Tom > > > On Oct 3, 2013, at 6:28 AM, James Gurtowski <gurtowsk(a)cshl.edu<mailto: > gurtowsk(a)cshl.edu>> wrote: > > I think you are back to the first error now. Is this from the master > branch? > > James > > > On Wed, Oct 2, 2013 at 9:26 PM, Thomas Brettin <brettin(a)mcs.anl.gov > <mailto:[email protected]>> wrote: > I upgraded to 1.7.0_25-b15. > > Where's this at? > > java -cp `find dist/jnomics-manager-*.jar` > edu.cshl.schatz.jnomics.manager.client.CreateKbaseScripts jk bin > Exception in thread "main" java.lang.NoClassDefFoundError: > org/apache/commons/lang3/StringUtils > at > edu.cshl.schatz.jnomics.manager.client.CreateKbaseScripts.main(Unknown > Source) > Caused by: java.lang.ClassNotFoundException: > org.apache.commons.lang3.StringUtils > at java.net.URLClassLoader$1.run(URLClassLoader.java:366) > at java.net.URLClassLoader$1.run(URLClassLoader.java:355) > at java.security.AccessController.doPrivileged(Native Method) > at java.net.URLClassLoader.findClass(URLClassLoader.java:354) > at java.lang.ClassLoader.loadClass(ClassLoader.java:424) > at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308) > at java.lang.ClassLoader.loadClass(ClassLoader.java:357) > ... 1 more > make[1]: *** [build-jnomics] Error 1 > make[1]: Leaving directory `/kb/dev_container/modules/jnomics' > make: *** [deploy] Error 1 > > > root@t12:/kb/dev_container# echo $CLASSPATH > > /kb/runtime//lib/*:/kb/dev_container/modules/auth/dist/lib/*:/kb/dev_container/modules/idserver/dist/lib/*:/kb/dev_container/modules/invocation/dist/lib/*:/kb/dev_container/modules/kb_seed/dist/lib/*:/kb/dev_container/modules/kbapi_common/dist/lib/*:/kb/dev_container/modules/typecomp/dist/lib/* > > > > >

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Re: [Release-team] help with classpath
by Thomas Brettin 03 Oct '13

03 Oct '13

Ok, the reason we're having problems with the master branch and the exact commit to pull from is as far as I can tell: 1) you are asking me to pull from the head of master. 2) the head of master has not been tested. 3) because the head of master has not been tested, there is no tag on it. 4) because there is no tag on it, the IRIS deploy process is pulling the last tagged commit. I'll go ahead and tag the head of master, and run it through the test process. If it passes the service test process, then I'll add it to the iris deployment. Sound good? On Oct 3, 2013, at 6:29 AM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > ugh! > > I'll check, thanks for helping. > > Tom > > > On Oct 3, 2013, at 6:28 AM, James Gurtowski <gurtowsk(a)cshl.edu> wrote: > >> I think you are back to the first error now. Is this from the master branch? >> >> James >> >> >> On Wed, Oct 2, 2013 at 9:26 PM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: >> I upgraded to 1.7.0_25-b15. >> >> Where's this at? >> >> java -cp `find dist/jnomics-manager-*.jar` edu.cshl.schatz.jnomics.manager.client.CreateKbaseScripts jk bin >> Exception in thread "main" java.lang.NoClassDefFoundError: org/apache/commons/lang3/StringUtils >> at edu.cshl.schatz.jnomics.manager.client.CreateKbaseScripts.main(Unknown Source) >> Caused by: java.lang.ClassNotFoundException: org.apache.commons.lang3.StringUtils >> at java.net.URLClassLoader$1.run(URLClassLoader.java:366) >> at java.net.URLClassLoader$1.run(URLClassLoader.java:355) >> at java.security.AccessController.doPrivileged(Native Method) >> at java.net.URLClassLoader.findClass(URLClassLoader.java:354) >> at java.lang.ClassLoader.loadClass(ClassLoader.java:424) >> at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308) >> at java.lang.ClassLoader.loadClass(ClassLoader.java:357) >> ... 1 more >> make[1]: *** [build-jnomics] Error 1 >> make[1]: Leaving directory `/kb/dev_container/modules/jnomics' >> make: *** [deploy] Error 1 >> >> >> root@t12:/kb/dev_container# echo $CLASSPATH >> /kb/runtime//lib/*:/kb/dev_container/modules/auth/dist/lib/*:/kb/dev_container/modules/idserver/dist/lib/*:/kb/dev_container/modules/invocation/dist/lib/*:/kb/dev_container/modules/kb_seed/dist/lib/*:/kb/dev_container/modules/kbapi_common/dist/lib/*:/kb/dev_container/modules/typecomp/dist/lib/* >> >> >

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