- Microbe - mailman3.cels.anl.gov

Blast Services for KBase
by Christopher Henry 03 Jan '13

03 Jan '13

So I'm wondering what kinds of blast services exist for KBase at the moment. Do we offer services that enable a user to blast a particular sequence against all genomes in our database? Specifically, I'm interested in a service that lets me "TBlastN" a series of candidate protein sequences against a specified set of KBase genomes. The idea is I think these proteins might be in these genomes, but they're not being spotted in part because of an error or omission in the gene calls. Do we have something that does this? If not, it seems like a good service to create. Seems like KBase should support all forms of blast if possible. If it's missing and we think we want to create it, is there an existing service in KBase that this would fit nicely into? Perhaps the genome annotation service? Chris

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Re: [Microbe] Microbes meeting today at 11P/1C/2E
by Christopher Henry 17 Dec '12

17 Dec '12

Hi all, The new number is: Please call: 866-858-9623 participant code: 9030092 Sorry about that. Chris On Dec 17, 2012, at 11:46 AM, Christopher Henry <chrisshenry(a)gmail.com> wrote: > Hello all, > > Just a reminder, we have a microbes call today at the usual time: 11P/1C/2E. > > Dial in information: 866-740-1260 > Code: 4958182# > > Best, > Chris

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Microbes meeting today at 11P/1C/2E
by Christopher Henry 17 Dec '12

17 Dec '12

Hello all, Just a reminder, we have a microbes call today at the usual time: 11P/1C/2E. Dial in information: 866-740-1260 Code: 4958182# Best, Chris

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Microbes Quarterly Report
by Paramvir Dehal 12 Dec '12

12 Dec '12

Hey guys, The quarterly report has returned! Email me any accomplishments that you think should be included. A couple sentences on each item will be more than enough. I'm going to try and get this to Bob by tomorrow morning. Paramvir

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Re: [Microbe] Microbes meeting today at 11P/1C/2E
by Christopher Henry 10 Dec '12

10 Dec '12

Hello all, Just a reminder, we have a microbes call today at the usual time: 11P/1C/2E. Dial in information: 866-740-1260 Code: 4958182# Best, Chris

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Microbes meeting today at 11P/1C/2E
by Christopher Henry 03 Dec '12

03 Dec '12

Hello all, Just a reminder, we have a microbes call today at the usual time: 11P/1C/2E. Dial in information: 866-740-1260 Code: 4958182# Best, Chris

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Re: [Microbe] Call today
by Christopher Henry 26 Nov '12

26 Nov '12

Sorry Steven, This is the build week, so the call is canceled since most people are either at the build, or in transit to the build. I apologize. There should have been an email announcing that the call was canceled… I've just been running around all morning coordinating my team for the build, so I completely forgot to send a note about the call. Chris On Nov 26, 2012, at 1:02 PM, "Steven E. Brenner" <brenner(a)compbio.berkeley.edu> wrote: > Are we having a call today? I'm getting hold music. > _______________________________________________ > Microbe mailing list > Microbe(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/microbe

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Re: [Microbe] Call today
by Keith Keller 26 Nov '12

26 Nov '12

On Mon, Nov 26, 2012 at 11:14 AM, Steven E. Brenner <brenner(a)compbio.berkeley.edu> wrote: > Ok, it's 11:10am and nobody has joined with a host code, > so I assume the call was cancelled? > > I thought we were confirmed for every Monday at 11am PT through 12/17. We are all either at the build meeting at ANL or en route. (Or our flight is delayed-grr!) --keith -- Keith Keller kkeller(a)lbl.gov Physical Biosciences Division, Lawrence Berkeley National Lab

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Re: [Microbe] Call today
by Steven E. Brenner 26 Nov '12

26 Nov '12

Ok, it's 11:10am and nobody has joined with a host code, so I assume the call was cancelled? I thought we were confirmed for every Monday at 11am PT through 12/17. On Mon, 26 Nov 2012, Steven E. Brenner wrote: > Are we having a call today? I'm getting hold music. > _______________________________________________ > Microbe mailing list > Microbe(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/microbe >

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Call today
by Steven E. Brenner 26 Nov '12

26 Nov '12

Are we having a call today? I'm getting hold music.

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