January 2012 - Microbe - mailman3.cels.anl.gov

Re: [Microbe] conference call on Monday
by Elizabeth M. Glass 30 Jan '12

30 Jan '12

Hi Tom, I think Bob had the wrong time listed in the email he sent. The call should be in one hour. it is correct on the KBas internal calendar (google). Elizabeth ----- Original Message ----- From: Thomas S. Brettin <brettints(a)ornl.gov> To: Pavel Novichkov <psnovichkov(a)lbl.gov>, KBase Microbes List <Microbe(a)lists.kbase.us> Sent: Mon, 30 Jan 2012 12:04:40 -0600 (CST) Subject: Re: [Microbe] conference call on Monday Is this happening today? I have it on calendar as starting a few minutes ago. Called in, but no one home. Tom -----Original Message----- From: microbe-bounces(a)lists.kbase.us [mailto:[email protected]] On Behalf Of Pavel Novichkov Sent: Thursday, January 26, 2012 7:21 PM To: KBase Microbes List Subject: [Microbe] conference call on Monday Hi All, The upcoming microbes con call is scheduled for Monday, and I would suggest to discuss in details what should be accomplished by Feb 13. I am still puzzled even about my data... Several strategies have been discussed during the ANL meeting, but still there are more questions than answers. What is going to CDM? What is going to GIT? If CDM has new structure, then the existing API of each core should be rewritten => if existing API will not work, then, once again, what should be submitted to GIT? P. _______________________________________________ Microbe mailing list Microbe(a)lists.kbase.us https://lists.kbase.us/mailman/listinfo/microbe _______________________________________________ Microbe mailing list Microbe(a)lists.kbase.us https://lists.kbase.us/mailman/listinfo/microbe

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Re: [Microbe] conference call on Monday
by Keith Keller 30 Jan '12

30 Jan '12

It is on my calendar for 11am PST/1pm CST. -k -- kkeller(a)lbl.gov On Jan 30, 2012 10:05 AM, "Brettin, Thomas S." <brettints(a)ornl.gov> wrote: > Is this happening today? I have it on calendar as starting a few minutes > ago. Called in, but no one home. > > Tom > > -----Original Message----- > From: microbe-bounces(a)lists.kbase.us [mailto: > microbe-bounces(a)lists.kbase.us] On Behalf Of Pavel Novichkov > Sent: Thursday, January 26, 2012 7:21 PM > To: KBase Microbes List > Subject: [Microbe] conference call on Monday > > Hi All, > > The upcoming microbes con call is scheduled for Monday, and I would > suggest to discuss in details what should be accomplished by Feb 13. I am > still puzzled even about my data... > > Several strategies have been discussed during the ANL meeting, but still > there are more questions than answers. > > What is going to CDM? What is going to GIT? If CDM has new structure, then > the existing API of each core should be rewritten => if existing API will > not work, then, once again, what should be submitted to GIT? > > P. > _______________________________________________ > Microbe mailing list > Microbe(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/microbe > _______________________________________________ > Microbe mailing list > Microbe(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/microbe >

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microbes call today
by Paramvir Dehal 30 Jan '12

30 Jan '12

Hi Everyone, We have our microbes call today at 11am Pacific Time. 1-866-740-1260 Code: 4958182# Agenda: 1) What needs to be accomplished by Feb 13. 2) UX meeting thoughts 3) KBase new hires Paramvir

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Re: [Microbe] conference call on Monday
by Brettin, Thomas S. 30 Jan '12

30 Jan '12

Is this happening today? I have it on calendar as starting a few minutes ago. Called in, but no one home. Tom -----Original Message----- From: microbe-bounces(a)lists.kbase.us [mailto:[email protected]] On Behalf Of Pavel Novichkov Sent: Thursday, January 26, 2012 7:21 PM To: KBase Microbes List Subject: [Microbe] conference call on Monday Hi All, The upcoming microbes con call is scheduled for Monday, and I would suggest to discuss in details what should be accomplished by Feb 13. I am still puzzled even about my data... Several strategies have been discussed during the ANL meeting, but still there are more questions than answers. What is going to CDM? What is going to GIT? If CDM has new structure, then the existing API of each core should be rewritten => if existing API will not work, then, once again, what should be submitted to GIT? P. _______________________________________________ Microbe mailing list Microbe(a)lists.kbase.us https://lists.kbase.us/mailman/listinfo/microbe

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conference call on Monday
by Pavel Novichkov 26 Jan '12

26 Jan '12

Hi All, The upcoming microbes con call is scheduled for Monday, and I would suggest to discuss in details what should be accomplished by Feb 13. I am still puzzled even about my data... Several strategies have been discussed during the ANL meeting, but still there are more questions than answers. What is going to CDM? What is going to GIT? If CDM has new structure, then the existing API of each core should be rewritten => if existing API will not work, then, once again, what should be submitted to GIT? P.

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RegPrecise web services
by Pavel Novichkov 26 Jan '12

26 Jan '12

Hi everyone, We have released the alpha-version of web services (with help and examples) to get access to the whole content of RegPrecise. http://regprecise.lbl.gov/RegPrecise/services.jsp Please look at it and comment... Accordingly, I am going to shutdown the web server that I used before for the initial test version of web services (http://hazelton.lbl.gov/RegPrecise_test/rest/) Recently we have found several miss-annotations in our data which are in particular caused by changes of the gene coordinates in new versions of genomes... so now we are working on this issue.. Will let you know once it is solved. P.

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Meeting today
by Christopher Henry 16 Jan '12

16 Jan '12

Hi all, Are we having a meeting today? I called in, but the chair person isn't there. It would be a good time to discuss the breakdown of the microbes demo into sub-project and to discuss the plans for the integration meeting. Regardless, I'll send my presentation for the integration meeting out to the microbes list today. Chris

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