- Release-team - mailman3.cels.anl.gov

minor release
by Thomas Brettin 18 Apr '13

18 Apr '13

There is a new tab in KBase Services on gdoc labeled Apr 23 2013 Minor Build. So far, we have 5 modules to redeploy. I know Bob wanted genome_annotation to be redeployed too. Git Repository invocation auth auth_service aux_store protein_info trees

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12:30 -1:00 pm CST Short Prep Meeting
by brettin＠mcs.anl.gov 18 Apr '13

18 Apr '13

The following is a new meeting request: Subject: 12:30 -1:00 pm CST [Release-team] Short Prep Meeting Organizer: brettin(a)mcs.anl.gov Sent By: "India S. Gordon" <igordon(a)cels.anl.gov> Location: 888-850-4523, passcode: 416791, leader passcode (Tom only) 4167913 Time: Monday, April 22, 2013, 12:30:00 PM - 1:00:00 PM GMT -06:00 US/Canada Central Invitees: release-team(a)lists.kbase.us *~*~*~*~*~*~*~*~*~*

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Re: [Release-team] minor release - start of the release notes
by Nomi Harris 18 Apr '13

18 Apr '13

On Apr 18, 2013, at 12:08 PM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > I would like to do a minor release next week. > > The primary target would be the invocation service. The current production invocation service is not aware of all of the commands as new command files were added to services after the last major build. > > Also, what do you guys think about the release engineering team "owning" the release notes? Basically, when we boot up a minor release, those things scheduled for the minor release would have a short sentence like the one above. These could be for internal use only, but I thin it would be good to know in general why something got scheduled for a minor release. Can you clarify what you mean by "owning"? It makes sense for the release team to collect and share (in whatever manner we decide, internal and/or external) the release notes, but I'm not sure how easy it will be for them to actually write the release notes. In the case above, the invocation service, the release team is intimately aware of what's going on with it, but how would the release team be expected to know what changed in all of the other services? If the developers added informative commit messages, it should be possible for the release team to read them all and summarize the changes, but that's a big if. I do think the release notes (at least in some concise form) should be shared publicly on our website so our users know what has changed. It would also be useful for the release team to keep more detailed release notes to help make us more aware of what has changed, for trouble-shooting etc. Nomi

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Re: [Release-team] short prep meeting
by Elizabeth M. Glass 18 Apr '13

18 Apr '13

I will be in flight to DC for the GSC meeting. I can do Tuesday. ----- Original Message ----- From: Thomas Brettin <brettin(a)mcs.anl.gov> To: India Gordon <igordon(a)cels.anl.gov> Cc: release-team(a)lists.kbase.us Sent: Thu, 18 Apr 2013 11:12:13 -0500 (CDT) Subject: [Release-team] short prep meeting Hey all, It would good to sync on Monday if possible shortly after Dan does the first deploy to the test environment. Thanks, Tom _______________________________________________ Release-team mailing list Release-team(a)lists.kbase.us https://lists.kbase.us/mailman/listinfo/release-team

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short prep meeting
by Thomas Brettin 18 Apr '13

18 Apr '13

Hey all, It would good to sync on Monday if possible shortly after Dan does the first deploy to the test environment. Thanks, Tom

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minor release - start of the release notes
by Thomas Brettin 18 Apr '13

18 Apr '13

I would like to do a minor release next week. The primary target would be the invocation service. The current production invocation service is not aware of all of the commands as new command files were added to services after the last major build. Also, what do you guys think about the release engineering team "owning" the release notes? Basically, when we boot up a minor release, those things scheduled for the minor release would have a short sentence like the one above. These could be for internal use only, but I thin it would be good to know in general why something got scheduled for a minor release. t

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Re: [Release-team] URLs for services
by Thomas Brettin 15 Apr '13

15 Apr '13

we adopted the "de-camelized" version of the module declaration. I send the code around awhile ago on how to compute this. So, in short, if you have the module declaration from the spec file you can compute the service url. This reduces the need to store in a document the url. we could add a "de-camelize" function to a service. On Apr 15, 2013, at 10:32 AM, Nomi Harris <nlharris(a)lbl.gov> wrote: > It would be nice to avoid this sort of problem in the future. Is there a doc somewhere that lists service production URLs? Is it worth having one? Or would people not look at it anyway? Or are all the URLs standardized anyway, except a few that weren't, which are now switching to conform to the standard? > Nomi Harris > Project Manager, KBase > > On Apr 15, 2013, at 8:20 AM, Christopher Henry <chrisshenry(a)gmail.com> wrote: > >> Model builder developers, please take note. You need to update the URLs for the FBA and workspace in your page: >> Workspace: http://kbase.us/services/workspace/ >> FBA: http://kbase.us/services/fba_model_services >> >> Chris >> >> Begin forwarded message: >> >>> From: Matt DeJongh <dejongh(a)hope.edu> >>> Subject: Re: model builder gui >>> Date: April 15, 2013 10:00:36 AM CDT >>> To: Paramvir Dehal <psdehal(a)lbl.gov>, Chris Henry <chrisshenry(a)gmail.com> >>> >>> ModelBuilder appears to be broken - I can't list any workspaces on the very first step, and can't create them either. >>> >>> >>> On Thu, Apr 11, 2013 at 12:23 PM, Matt DeJongh <dejongh(a)hope.edu> wrote: >>> I did try it a few weeks ago. I thought it looked very promising at the time. Right now it isn't showing any of my workspaces, but that may be due to the transfer to production services that Chris implemented yesterday. >>> >>> Matt >>> >>> >>> On Wed, Apr 10, 2013 at 7:52 PM, Paramvir Dehal <psdehal(a)lbl.gov> wrote: >>> Have you tried using this tool: >>> >>> http://140.221.84.157/microbes_model_builder/model_builder.html >>> >>> >>> >>> >>> >>> -- >>> Matt DeJongh, Ph.D. >>> Computer Science Department >>> Hope College, Holland, MI 49423 >>> (616) 395-7429 >>> >>> >>> >>> -- >>> Matt DeJongh, Ph.D. >>> Computer Science Department >>> Hope College, Holland, MI 49423 >>> (616) 395-7429 >> >> _______________________________________________ >> Kbase-devel mailing list >> Kbase-devel(a)lists.kbase.us >> https://lists.kbase.us/mailman/listinfo/kbase-devel > > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team

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URLs for services
by Nomi Harris 15 Apr '13

15 Apr '13

It would be nice to avoid this sort of problem in the future. Is there a doc somewhere that lists service production URLs? Is it worth having one? Or would people not look at it anyway? Or are all the URLs standardized anyway, except a few that weren't, which are now switching to conform to the standard? Nomi Harris Project Manager, KBase On Apr 15, 2013, at 8:20 AM, Christopher Henry <chrisshenry(a)gmail.com> wrote: > Model builder developers, please take note. You need to update the URLs for the FBA and workspace in your page: > Workspace: http://kbase.us/services/workspace/ > FBA: http://kbase.us/services/fba_model_services > > Chris > > Begin forwarded message: > >> From: Matt DeJongh <dejongh(a)hope.edu> >> Subject: Re: model builder gui >> Date: April 15, 2013 10:00:36 AM CDT >> To: Paramvir Dehal <psdehal(a)lbl.gov>, Chris Henry <chrisshenry(a)gmail.com> >> >> ModelBuilder appears to be broken - I can't list any workspaces on the very first step, and can't create them either. >> >> >> On Thu, Apr 11, 2013 at 12:23 PM, Matt DeJongh <dejongh(a)hope.edu> wrote: >> I did try it a few weeks ago. I thought it looked very promising at the time. Right now it isn't showing any of my workspaces, but that may be due to the transfer to production services that Chris implemented yesterday. >> >> Matt >> >> >> On Wed, Apr 10, 2013 at 7:52 PM, Paramvir Dehal <psdehal(a)lbl.gov> wrote: >> Have you tried using this tool: >> >> http://140.221.84.157/microbes_model_builder/model_builder.html >> >> >> >> >> >> -- >> Matt DeJongh, Ph.D. >> Computer Science Department >> Hope College, Holland, MI 49423 >> (616) 395-7429 >> >> >> >> -- >> Matt DeJongh, Ph.D. >> Computer Science Department >> Hope College, Holland, MI 49423 >> (616) 395-7429 > > _______________________________________________ > Kbase-devel mailing list > Kbase-devel(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/kbase-devel

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Re: [Release-team] Fwd: [Outreach] download
by Nomi Harris 08 Apr '13

08 Apr '13

On Apr 8, 2013, at 1:14 PM, Dan Olson <dolson(a)mcs.anl.gov> wrote: > This error message is likely because they have signed packages only enabled. > > I'm not sure if our current version is signed, I'll look into it. > > They can turn this off with the following: > 1. Open System Preferences: Security and Privacy: General > 2. Unlock the lock to make changes > 3. Select "Anywhere" from "Allow applications downloaded from" > 4. Now install > 5. Restart the computer > 6. Open System Preferences: Security and Privacy: General > 7. Unlock the lock to make changes > 8. Change the setting back to "Mac App Store and Identified developers" Thanks for the detailed instructions! The first step is to get them to download the latest dmg before we even go through any other troubleshooting steps. We don't *want* them to use an old one! We had wanted to get the dmg signed, but I'm not sure whether that ever happened. It would be good to know. Here's what I sent the user who asked the question: On Apr 8, 2013, at 1:11 PM, Nomi Harris <nlharris(a)lbl.gov> wrote: > Dear Dr. Hauser, > We're not sure where you found kb-v2013-01-13.dmg -- can you tell me the URL of the page where you found it? It is an obsolete version. Please visit http://kbase.us/developer-zone/downloads/ for the latest dmg. If that one doesn't work for you, let us know and we'll help trouble-shoot. > Nomi Harris > Project Manager, KBase > > ----- Original Message ----- >> From: "Nomi Harris" <nlharris(a)lbl.gov> >> To: release-team(a)lists.kbase.us >> Cc: "Meghan M. Drake" <drakemm(a)ornl.gov> >> Sent: Monday, April 8, 2013 3:09:20 PM >> Subject: [Release-team] Fwd: [Outreach] download >> >> I went to try to download this dmg and see what was wrong, but I >> can't figure out where Loren even found it! The version on >> http://kbase.us/developer-zone/downloads/ is 20130219-prod-dmg-4.dmg >> and even the older version down in the gray zone is >> kb-v2013-01-17.dmg >> >> I can go ahead and reply and suggest that Loren download the latest >> version. >> >> Aren't we glad that we put version numbers in the dmg filenames so >> that we didn't have to have a long, frustrating dialog with Loren >> about the problem before realizing that he or she was using an >> out-of-date dmg? :-) >> >> Nomi >> >> Begin forwarded message: >> >>> From: "Hauser, Loren John" <hauserlj(a)ornl.gov> >>> Subject: [Outreach] download >>> Date: April 8, 2013 11:44:37 AM PDT >>> To: "help(a)kbase.us" <help(a)kbase.us> >>> >>> I downloaded the Mac OS X package kb-v2013-01-13.dmg and tried to >>> open and install and got at OSStatus error 100030. >>> Any suggestions? >>> Loren Hauser, PhD >>> Computation Biology and Bioinformatics Group >>> BioSciences Division >>> Oak Ridge National Laboratory >>> One Bethel Valley Road >>> P.O. Box 6420 >>> Oak Ridge, TN 37831-6420 >>> work: 865-241-1960 >>> cell: 865-607-7143

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Re: [Release-team] Fwd: [Outreach] download
by Dan Olson 08 Apr '13

08 Apr '13

This error message is likely because they have signed packages only enabled. I'm not sure if our current version is signed, I'll look into it. They can turn this off with the following: 1. Open System Preferences: Security and Privacy: General 2. Unlock the lock to make changes 3. Select "Anywhere" from "Allow applications downloaded from" 4. Now install 5. Restart the computer 6. Open System Preferences: Security and Privacy: General 7. Unlock the lock to make changes 8. Change the setting back to "Mac App Store and Identified developers" ----- Original Message ----- > From: "Nomi Harris" <nlharris(a)lbl.gov> > To: release-team(a)lists.kbase.us > Cc: "Meghan M. Drake" <drakemm(a)ornl.gov> > Sent: Monday, April 8, 2013 3:09:20 PM > Subject: [Release-team] Fwd: [Outreach] download > > I went to try to download this dmg and see what was wrong, but I > can't figure out where Loren even found it! The version on > http://kbase.us/developer-zone/downloads/ is 20130219-prod-dmg-4.dmg > and even the older version down in the gray zone is > kb-v2013-01-17.dmg > > I can go ahead and reply and suggest that Loren download the latest > version. > > Aren't we glad that we put version numbers in the dmg filenames so > that we didn't have to have a long, frustrating dialog with Loren > about the problem before realizing that he or she was using an > out-of-date dmg? :-) > > Nomi > > Begin forwarded message: > > > From: "Hauser, Loren John" <hauserlj(a)ornl.gov> > > Subject: [Outreach] download > > Date: April 8, 2013 11:44:37 AM PDT > > To: "help(a)kbase.us" <help(a)kbase.us> > > > > I downloaded the Mac OS X package kb-v2013-01-13.dmg and tried to > > open and install and got at OSStatus error 100030. > > Any suggestions? > > Loren Hauser, PhD > > Computation Biology and Bioinformatics Group > > BioSciences Division > > Oak Ridge National Laboratory > > One Bethel Valley Road > > P.O. Box 6420 > > Oak Ridge, TN 37831-6420 > > work: 865-241-1960 > > cell: 865-607-7143 > > _______________________________________________ > > Outreach mailing list > > Outreach(a)lists.kbase.us > > https://lists.kbase.us/mailman/listinfo/outreach > > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team >

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