January 2013 - Release-team - mailman3.cels.anl.gov

Re: [Release-team] Are minor releases cumulative? [was Re: Redeploy testing summary]
by Thomas Brettin 27 Jan '13

27 Jan '13

On Jan 26, 2013, at 4:42 PM, Nomi Harris <nlharris(a)lbl.gov> wrote: > Thanks, Miriam. > Are minor releases cumulative? In other words, if we released a service last week (say, Ontology), is it included in this minor release as well? I'm guessing not, because there might have been new changes to the service that broke it. A module owner can have their module in the release cycle each week if they choose. I'm targeting that goal. > That means that I need to move the "Available Now" releases on http://www.kbase.us/developer-zone/services/ back to "Coming Soon", right? > If so, then I think we also need to list the services included in each dmg on the Downloads page (http://www.kbase.us/developer-zone/downloads/) Can someone think of how to auto-generate this? > because a new user might really want one of the services in the first Jan release and thus might want to download the older release instead of the newer one. But what if they want some of the services from the first minor release and some from the second? Is there any way to get both, or do they just have to wait a month for the full release? This is going to require some thought. The distinction between minor and major releases and how fine the versioning of all the independent parts should be thought through. Also, it needs lend itself to automation or our releases won't scale. Lets put this on the agenda for discussion at the Feb 4 release week. > Nomi > > On Jan 26, 2013, at 7:09 AM, "Land, Miriam L." <landml(a)ornl.gov> wrote: > >> Release team, >> >> The list of modules that passed testing on either the 1st or redeploy and passed documents are: >> >> * communities_qc >> * erdb_service (private) >> * kb_seed >> * workspace_service >> * And the dependencies idserver, typecomp, cluster_service, kb_model_seed >> >> Just for completeness, the services that followed our procedure and failed are: >> >> * genome_annotation – failed make test on redeploy. It may work but until someone rewrites the tests, it fails the established procedure. >> * KBaseFBAModeling – failed make test on redeploy >> * matR – instructions for running demo (instead of make test) failed on redeploy >> * Translation – failed make test on redeploy >> * The dependency sim_service still is marked as having no documents but was in the last release. Therefore, it fails the established procedure. >> >> Miriam >> _______________________________________________ >> Release-team mailing list >> Release-team(a)lists.kbase.us >> https://lists.kbase.us/mailman/listinfo/release-team > > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team Thomas Brettin 865-603-7760 (cell) brettin(a)mcs.anl.gov

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Are minor releases cumulative? [was Re: Redeploy testing summary]
by Nomi Harris 26 Jan '13

26 Jan '13

Thanks, Miriam. Are minor releases cumulative? In other words, if we released a service last week (say, Ontology), is it included in this minor release as well? I'm guessing not, because there might have been new changes to the service that broke it. That means that I need to move the "Available Now" releases on http://www.kbase.us/developer-zone/services/ back to "Coming Soon", right? If so, then I think we also need to list the services included in each dmg on the Downloads page (http://www.kbase.us/developer-zone/downloads/) because a new user might really want one of the services in the first Jan release and thus might want to download the older release instead of the newer one. But what if they want some of the services from the first minor release and some from the second? Is there any way to get both, or do they just have to wait a month for the full release? Nomi On Jan 26, 2013, at 7:09 AM, "Land, Miriam L." <landml(a)ornl.gov> wrote: > Release team, > > The list of modules that passed testing on either the 1st or redeploy and passed documents are: > > * communities_qc > * erdb_service (private) > * kb_seed > * workspace_service > * And the dependencies idserver, typecomp, cluster_service, kb_model_seed > > Just for completeness, the services that followed our procedure and failed are: > > * genome_annotation – failed make test on redeploy. It may work but until someone rewrites the tests, it fails the established procedure. > * KBaseFBAModeling – failed make test on redeploy > * matR – instructions for running demo (instead of make test) failed on redeploy > * Translation – failed make test on redeploy > * The dependency sim_service still is marked as having no documents but was in the last release. Therefore, it fails the established procedure. > > Miriam > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team

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Redeploy testing summary
by Land, Miriam L. 26 Jan '13

26 Jan '13

Release team, The list of modules that passed testing on either the 1st or redeploy and passed documents are: * communities_qc * erdb_service (private) * kb_seed * workspace_service * And the dependencies idserver, typecomp, cluster_service, kb_model_seed Just for completeness, the services that followed our procedure and failed are: * genome_annotation – failed make test on redeploy. It may work but until someone rewrites the tests, it fails the established procedure. * KBaseFBAModeling – failed make test on redeploy * matR – instructions for running demo (instead of make test) failed on redeploy * Translation – failed make test on redeploy * The dependency sim_service still is marked as having no documents but was in the last release. Therefore, it fails the established procedure. Miriam

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release targets for Jan 28.
by Thomas Brettin 25 Jan '13

25 Jan '13

Here are the targets thus far for the next release. We should add to it phi spy plant_expression_service genotype_phenotype_api protein_info_service prom_service registry Thomas Brettin 865-603-7760 (cell) brettin(a)mcs.anl.gov

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Re: [Release-team] Request to share KBase Services
by Thomas Brettin 25 Jan '13

25 Jan '13

who does he belong to? Also, nomi can you change the owner of that spreadsheet back to me, or include me so I see these requests. Thanks, Tom On Jan 25, 2013, at 10:11 AM, Nomi Harris <nlharris(a)lbl.gov> wrote: > Matthew Benedict is, as far as I know, a non-KBase person who has subscribed to the devel mailing list. He now wants access to the KBase Services mailing list. I am not inclined to grant this, unless any of you feel strongly that I should. > Nomi > > Begin forwarded message: > >> From: "Matthew Benedict (Google Drive)" <matthew.n.benedict(a)gmail.com> >> Subject: Request to share KBase Services >> Date: January 25, 2013 7:24:16 AM PST >> To: nlharris(a)lbl.gov >> >> Request to share >> KBase Services >> >> You are the owner of this item and matthew.n.benedict(a)gmail.com has asked that you share this item with: >> + matthew.n.benedict(a)gmail.com >> Add these people in Sharing settings. >> >> Google Drive: create, share, and keep all your stuff in one place. > > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team Thomas Brettin 865-603-7760 (cell) brettin(a)mcs.anl.gov

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Re: [Release-team] redeployment is complete.
by Thomas Brettin 25 Jan '13

25 Jan '13

Would it be helpful to indicate which modules were redeployed, or is everyone now tuned into the kbase services spreadsheet tab Jan 21 Minor? Tom On Jan 25, 2013, at 9:49 AM, Dan Olson <dolson(a)mcs.anl.gov> wrote: > > > ---- > Daniel Murphy-Olson > Systems Administrator > Mathematics & Computer Science Division > Argonne National Laboratory > 630-252-0055 > > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team Thomas Brettin 865-603-7760 (cell) brettin(a)mcs.anl.gov

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Fwd: Request to share KBase Services
by Nomi Harris 25 Jan '13

25 Jan '13

Matthew Benedict is, as far as I know, a non-KBase person who has subscribed to the devel mailing list. He now wants access to the KBase Services mailing list. I am not inclined to grant this, unless any of you feel strongly that I should. Nomi Begin forwarded message: > From: "Matthew Benedict (Google Drive)" <matthew.n.benedict(a)gmail.com> > Subject: Request to share KBase Services > Date: January 25, 2013 7:24:16 AM PST > To: nlharris(a)lbl.gov > > Request to share > KBase Services > > You are the owner of this item and matthew.n.benedict(a)gmail.com has asked that you share this item with: > + matthew.n.benedict(a)gmail.com > Add these people in Sharing settings. > > Google Drive: create, share, and keep all your stuff in one place.

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redeployment is complete.
by Dan Olson 25 Jan '13

25 Jan '13

---- Daniel Murphy-Olson Systems Administrator Mathematics & Computer Science Division Argonne National Laboratory 630-252-0055

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Re: [Release-team] deployment errors
by Robert Olson 25 Jan '13

25 Jan '13

Oh I see - we were testing a change to the dev_container commit rules and a bad makefile change got pushed. I just fixed. On Jan 25, 2013, at 8:35 AM, Dan Olson wrote: > Ok.. This completely broke deployment. For all modules. I cannot proceed until this is fixed. > > /kb/deployment doesn't even get created. > > ----- Original Message ----- >> From: "Dan Olson" <dolson(a)mcs.anl.gov> >> To: release-team(a)kbase.us >> Cc: "Robert Olson" <olson(a)mcs.anl.gov> >> Sent: Friday, January 25, 2013 8:29:56 AM >> Subject: [Release-team] deployment errors >> >> How much this impacts the deployment remains to be seen, I haven't >> ran through each module yet >> but I'm getting errors on deployment, looks like mac DMG support? >> >> make: [deploy-user-env] Error 1 (ignored) >> echo "export PYTHONPATH=$q\$KB_PERL_PATH:\$PYTHONPATH$q" >> $dest; >> /bin/sh: cannot create >> /Volumes/KBase/KBase.app/deployment/user-env.sh: Directory >> nonexistent >> /bin/sh: cannot create >> /Volumes/KBase/KBase.app/deployment/user-env.sh: Directory >> nonexistent >> /bin/sh: cannot create >> /Volumes/KBase/KBase.app/deployment/user-env.sh: Directory >> nonexistent >> /bin/sh: cannot create >> /Volumes/KBase/KBase.app/deployment/user-env.sh: Directory >> nonexistent >> /bin/sh: cannot create >> /Volumes/KBase/KBase.app/deployment/user-env.sh: Directory >> nonexistent >> /bin/sh: cannot create >> /Volumes/KBase/KBase.app/deployment/user-env.sh: Directory >> nonexistent >> make: *** [deploy-user-env] Error 2 >> >> >> ---- >> Daniel Murphy-Olson >> Systems Administrator >> Mathematics & Computer Science Division >> Argonne National Laboratory >> 630-252-0055 >> >> _______________________________________________ >> Release-team mailing list >> Release-team(a)lists.kbase.us >> https://lists.kbase.us/mailman/listinfo/release-team >>

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Re: [Release-team] deployment errors
by Robert Olson 25 Jan '13

25 Jan '13

Where are you seeing that? On Jan 25, 2013, at 8:29 AM, Dan Olson wrote: > How much this impacts the deployment remains to be seen, I haven't ran through each module yet > but I'm getting errors on deployment, looks like mac DMG support? > > make: [deploy-user-env] Error 1 (ignored) > echo "export PYTHONPATH=$q\$KB_PERL_PATH:\$PYTHONPATH$q" >> $dest; > /bin/sh: cannot create /Volumes/KBase/KBase.app/deployment/user-env.sh: Directory nonexistent > /bin/sh: cannot create /Volumes/KBase/KBase.app/deployment/user-env.sh: Directory nonexistent > /bin/sh: cannot create /Volumes/KBase/KBase.app/deployment/user-env.sh: Directory nonexistent > /bin/sh: cannot create /Volumes/KBase/KBase.app/deployment/user-env.sh: Directory nonexistent > /bin/sh: cannot create /Volumes/KBase/KBase.app/deployment/user-env.sh: Directory nonexistent > /bin/sh: cannot create /Volumes/KBase/KBase.app/deployment/user-env.sh: Directory nonexistent > make: *** [deploy-user-env] Error 2 > > > ---- > Daniel Murphy-Olson > Systems Administrator > Mathematics & Computer Science Division > Argonne National Laboratory > 630-252-0055 >

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