I'm using the tool now on Chris's phenotypeDemo workspace, and it is totally awesome! Really nice work! See attached Attached are around 15 different medias for a few of the models Chris built. We need to add about 100 more medias and we'll run out of rows. To save space and make the columns skinny you could - remove the word "complete" from the cells; - remove the "model name" from all the cells (its in the row label); - vertically orient the text in the column headings ; and - limit the precision of the numbers to something like about ~3 decimal places. Ben -------------- Email: [email protected] Phone: (510) 214-6683 MS 977-221, Lawrence Berkeley Lab Web: ms.lbl.gov On Thu, Mar 14, 2013 at 11:25 AM, Michael Sneddon <[email protected]> wrote:
Mostly as an excuse to learn some javascript, I have started piecing together a simple interface for running FBA models.
http://140.221.84.246/microbes_model_runner/fba_model_runner.html
The interface allows you to create a table of runFBA parameters, with different media conditions for each column and model formulations for each row. Calls to runfba are automatically generated, and the table is filled in with growth results as the runfba jobs are completed. See the attached screenshot for an example.
Since this minimal interface may already be useful for some of you, I thought I'd send it around now for testing and to see what everyone thinks.
I can only take partial credit for what you see - the nicer looking bits were mostly stolen from Matt and Bill's model builder, and Paramvir came up with the original idea :) .
-michael
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