I'm using the tool now on Chris's phenotypeDemo workspace, and it is totally awesome! Really nice work! See attached
Attached are around 15 different medias for a few of the models Chris built. We need to add about 100 more medias and we'll run out of rows.
To save space and make the columns skinny you could
- remove the word "complete" from the cells;
- remove the "model name" from all the cells (its in the row label);
- vertically orient the text in the column headings ; and
- limit the precision of the numbers to something like about ~3 decimal places.
Ben
--------------
Email: BPBowen@lbl.gov
Phone: (510) 214-6683
MS 977-221, Lawrence Berkeley Lab
Web: ms.lbl.gov
On Thu, Mar 14, 2013 at 11:25 AM, Michael Sneddon <mwsneddon@lbl.gov> wrote:
> Mostly as an excuse to learn some javascript, I have started piecing
> together a simple interface for running FBA models.
>
> http://140.221.84.246/microbes_model_runner/fba_model_runner.html
>
> The interface allows you to create a table of runFBA parameters, with
> different media conditions for each column and model formulations for each
> row. Calls to runfba are automatically generated, and the table is filled
> in with growth results as the runfba jobs are completed. See the attached
> screenshot for an example.
>
> Since this minimal interface may already be useful for some of you, I
> thought I'd send it around now for testing and to see what everyone thinks.
>
> I can only take partial credit for what you see - the nicer looking bits
> were mostly stolen from Matt and Bill's model builder, and Paramvir came up
> with the original idea :) .
>
> -michael
>
> _______________________________________________
> Microbe mailing list
> Microbe@lists.kbase.us
> https://lists.kbase.us/mailman/listinfo/microbe
>