January 2017 - Intel-nda - mailman3.cels.anl.gov

Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi
by Will Boyd 09 Jan '17

09 Jan '17

Thanks Michael, I appreciate your help and hope you find a workable solution. Also, I find it interesting that many of the counters in the Intel Xeon Phi Processor High Performance Programming <https://www.elsevier.com/books/intel-xeon-phi-processor-high-performance-pr…> guide (Chap. 14) are not available in VTune. In particular, when I select "Intel Xeon Phi coprocessor" in the VTune GUI, and then look at the available events under the "Analysis Type" tab, I do not see the events listed in the guide. Is there a reason that the counters in VTune don't correspond to those in the programming guide? On Fri, Jan 6, 2017 at 11:01 AM D'mello, Michael <michael.dmello(a)intel.com> wrote: I was too optimistic on the event names. Also, it looks like that kernel parameter will have to set. More shortly. -michael *From:* Will Boyd [mailto:[email protected]] *Sent:* Friday, January 06, 2017 9:56 AM *To:* D'mello, Michael <michael.dmello(a)intel.com>; Hammond, Jeff R < jeff.r.hammond(a)intel.com>; intel-nda(a)jlse.anl.gov *Subject:* Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi Thanks Michael. I tried running the "hpc-performance" command but it led to this: amplxe: Error: Cannot find knob dram-bandwidth-limits. For a list of available knobs, use –help collect-with runsa After removing the dram-bandwith-limits knob, it errored out with the same error message I've seen due to "perf": amplxe: Warning: To profile kernel modules during the session, make sure they are available in the /lib/modules/kernel_version/ location. ERROR: Event CYCLE_ACTIVITY.STALLS_L1D_MISS discarded since the event is invalid or the device does not exist ERROR: Event CYCLE_ACTIVITY.STALLS_L2_MISS discarded since the event is invalid or the device does not exist ERROR: Event CYCLE_ACTIVITY.STALLS_MEM_ANY discarded since the event is invalid or the device does not exist ERROR: Event CYCLE_ACTIVITY.STALLS_TOTAL discarded since the event is invalid or the device does not exist ERROR: Event IDQ_UOPS_NOT_DELIVERED.CORE discarded since the event is invalid or the device does not exist ERROR: Event INT_MISC.RECOVERY_CYCLES discarded since the event is invalid or the device does not exist ERROR: Event MEM_LOAD_UOPS_RETIRED.L3_HIT_PS discarded since the event is invalid or the device does not exist ERROR: Event MEM_LOAD_UOPS_RETIRED.L3_MISS_PS discarded since the event is invalid or the device does not exist ERROR: Event OFFCORE_REQUESTS_OUTSTANDING.CYCLES_WITH_DEMAND_DATA_RD discarded since the event is invalid or the device does not exist ERROR: Event OFFCORE_REQUESTS_OUTSTANDING.DEMAND_DATA_RD_GE_6 discarded since the event is invalid or the device does not exist ERROR: Event RESOURCE_STALLS.SB discarded since the event is invalid or the device does not exist ERROR: Event RS_EVENTS.EMPTY_CYCLES discarded since the event is invalid or the device does not exist ERROR: Event UOPS_EXECUTED.CYCLES_GE_1_UOP_EXEC discarded since the event is invalid or the device does not exist ERROR: Event UOPS_EXECUTED.CYCLES_GE_2_UOPS_EXEC discarded since the event is invalid or the device does not exist ERROR: Event UOPS_EXECUTED.CYCLES_GE_3_UOPS_EXEC discarded since the event is invalid or the device does not exist ERROR: Event UOPS_ISSUED.ANY discarded since the event is invalid or the device does not exist ERROR: Event UOPS_RETIRED.RETIRE_SLOTS discarded since the event is invalid or the device does not exist ERROR: Event IDQ_UOPS_NOT_DELIVERED.CYCLES_0_UOPS_DELIV.CORE discarded since the event is invalid or the device does not exist ERROR: Event OFFCORE_REQUESTS_OUTSTANDING.ALL_DATA_RD:cmask=4 discarded since the event is invalid or the device does not exist ERROR: Event OFFCORE_REQUESTS_OUTSTANDING.CYCLES_WITH_DATA_RD discarded since the event is invalid or the device does not exist ERROR: Event FP_ARITH_INST_RETIRED.SCALAR_SINGLE discarded since the event is invalid or the device does not exist ERROR: Event FP_ARITH_INST_RETIRED.128B_PACKED_SINGLE discarded since the event is invalid or the device does not exist ERROR: Event FP_ARITH_INST_RETIRED.256B_PACKED_SINGLE discarded since the event is invalid or the device does not exist ERROR: Event FP_ARITH_INST_RETIRED.SCALAR_DOUBLE discarded since the event is invalid or the device does not exist ERROR: Event FP_ARITH_INST_RETIRED.128B_PACKED_DOUBLE discarded since the event is invalid or the device does not exist ERROR: Event FP_ARITH_INST_RETIRED.256B_PACKED_DOUBLE discarded since the event is invalid or the device does not exist ERROR: Event INST_RETIRED.X87 discarded since the event is invalid or the device does not exist amplxe: Error: both cgroup and no-aggregation modes only available in system-wide mode usage: perf stat [<options>] [<command>] -G, --cgroup <name> monitor event in cgroup name only -A, --no-aggr disable CPU count aggregation -a, --all-cpus system-wide collection from all CPUs On Fri, Jan 6, 2017 at 10:45 AM D'mello, Michael <michael.dmello(a)intel.com> wrote: Great. For convenience, you may want to script this, but here is the line for hpc performance: amplxe-cl -collect-with runsa -knob event-config=CPU_CLK_UNHALTED.THREAD:sa=2300000,CPU_CLK_UNHALTED.REF_TSC:sa=2300000,INST_RETIRED.ANY:sa=2300000,CYCLE_ACTIVITY.STALLS_L1D_MISS:sa=2000003,CYCLE_ACTIVITY.STALLS_L2_MISS:sa=2000003,CYCLE_ACTIVITY.STALLS_MEM_ANY:sa=2000003,CYCLE_ACTIVITY.STALLS_TOTAL:sa=2000003,IDQ_UOPS_NOT_DELIVERED.CORE:sa=2000003,INT_MISC.RECOVERY_CYCLES:sa=2000003,MEM_LOAD_UOPS_RETIRED.L3_HIT_PS:sa=50003,MEM_LOAD_UOPS_RETIRED.L3_MISS_PS:sa=100003,OFFCORE_REQUESTS_OUTSTANDING.CYCLES_WITH_DEMAND_DATA_RD:sa=2000003,OFFCORE_REQUESTS_OUTSTANDING.DEMAND_DATA_RD_GE_6:sa=2000003,RESOURCE_STALLS.SB:sa=2000003,RS_EVENTS.EMPTY_CYCLES:sa=2000003,UOPS_EXECUTED.CYCLES_GE_1_UOP_EXEC:sa=2000003,UOPS_EXECUTED.CYCLES_GE_2_UOPS_EXEC:sa=2000003,UOPS_EXECUTED.CYCLES_GE_3_UOPS_EXEC:sa=2000003,UOPS_ISSUED.ANY:sa=2000003,UOPS_RETIRED.RETIRE_SLOTS:sa=2000003,IDQ_UOPS_NOT_DELIVERED.CYCLES_0_UOPS_DELIV.CORE:sa=2000003,OFFCORE_REQUESTS_OUTSTANDING.ALL_DATA_RD:cmask=4:sa=2000003,OFFCORE_REQUESTS_OUTSTANDING.CYCLES_WITH_DATA_RD:sa=2000003,FP_ARITH_INST_RETIRED.SCALAR_SINGLE:sa=2000003,FP_ARITH_INST_RETIRED.128B_PACKED_SINGLE:sa=2000003,FP_ARITH_INST_RETIRED.256B_PACKED_SINGLE:sa=2000003,FP_ARITH_INST_RETIRED.SCALAR_DOUBLE:sa=2000003,FP_ARITH_INST_RETIRED.128B_PACKED_DOUBLE:sa=2000003,FP_ARITH_INST_RETIRED.256B_PACKED_DOUBLE:sa=2000003,INST_RETIRED.X87:sa=2000003 -knob collectMemBandwidth=true -knob dram-bandwidth-limits=true -knob analyze-loops=true -knob analyze-openmp=true ./a.out Also, feel free to remove the ‘:sa=xxxxx’ parameter specifications. You may find this (slightly dated) video useful: https://software.intel.com/en-us/videos/intel-vtune-amplifier-xe-video-tuto… More shortly. -michael *From:* Will Boyd [mailto:[email protected]] *Sent:* Friday, January 06, 2017 9:36 AM *To:* D'mello, Michael <michael.dmello(a)intel.com>; Hammond, Jeff R < jeff.r.hammond(a)intel.com>; intel-nda(a)jlse.anl.gov *Subject:* Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi Michael, The output for that command was the following: ]$ amplxe-cl -collect-with runsa -knob event-config=CPU_CLK_UNHALTED.THREAD:sa=2300000,CPU_CLK_UNHALTED.REF_TSC:sa=2300000,INST_RETIRED.ANY:sa=2300000 openmc amplxe: Warning: To profile kernel modules during the session, make sure they are available in the /lib/modules/kernel_version/ location. amplxe: Collection started. To stop the collection, either press CTRL-C or enter from another console window: amplxe-cl -r /home/wboyd/ecp-benchmarks/pin-cell/r001runsa -command stop. ... amplxe: Collection stopped. amplxe: Using result path `/home/wboyd/ecp-benchmarks/pin-cell/r001runsa' amplxe: Executing actions 0 % amplxe: Warning: The result contains a lot of raw data. Finalization may take much time. Use the -finalization-mode=deferred option to finalize the result on a faster single-thread performance machine. amplxe: Executing actions 12 % Loading '91917.perf' file amplxe: Executing actions 19 % Resolving information for `libhdf5_fortran.so.10 amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/jbd2/jbd2.ko'. amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/nfs/nfs.ko'. amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/ext4/ext4.ko'. amplxe: Executing actions 19 % Resolving information for `libhdf5_hl.so.100.0.0 amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/drivers/ata/libahci.ko'. amplxe: Executing actions 19 % Resolving information for `libahci.ko' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/ libc-2.17.so'. amplxe: Executing actions 19 % Resolving information for `libpthread-2.17.so' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/ libpthread-2.17.so'. amplxe: Executing actions 20 % Resolving information for `ld-2.17.so' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/ ld-2.17.so'. amplxe: Executing actions 20 % Resolving information for `libm-2.17.so' amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/net/sunrpc/sunrpc.ko'. amplxe: Executing actions 20 % Resolving information for `sunrpc.ko' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/ libm-2.17.so'. amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/lockd/lockd.ko'. amplxe: Executing actions 20 % Resolving information for `libgomp.so.1.0.0' amplxe: Warning: %CantOpenFile amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/drivers/ata/libata.ko'. amplxe: Executing actions 20 % Resolving information for `libata.ko' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/libgomp.so.1.0.0'. amplxe: Executing actions 21 % Resolving information for `libgfortran.so.3.0.0' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/libgfortran.so.3.0.0'. amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/drivers/net/ethernet/intel/igb/igb.ko'. amplxe: Executing actions 21 % Resolving information for `libmpi.so.0.0.0' amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/nfs/nfsv3.ko'. amplxe: Executing actions 21 % Resolving information for `libgcc_s-4.8.5-201507 amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/libgcc_s-4.8.5-20150702.so.1'. amplxe: Executing actions 75 % Generating a report Collection and Platform Info ---------------------------- Parameter r001runsa ------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Application Command Line openmc Operating System 3.10.0-514.2.2.el7.x86_64 NAME="Red Hat Enterprise Linux Server" VERSION="7.3 (Maipo)" ID="rhel" ID_LIKE="fedora" VERSION_ID="7.3" PRETTY_NAME="Red Hat Enterprise Linux Server 7.3 (Maipo)" ANSI_COLOR="0;31" CPE_NAME="cpe:/o:redhat:enterprise_linux:7.3:GA:server" HOME_URL="https://www.redhat.com/" BUG_REPORT_URL="https://bugzilla.redhat.com/" REDHAT_BUGZILLA_PRODUCT="Red Hat Enterprise Linux 7" REDHAT_BUGZILLA_PRODUCT_VERSION=7.3 REDHAT_SUPPORT_PRODUCT="Red Hat Enterprise Linux" REDHAT_SUPPORT_PRODUCT_VERSION="7.3" Computer Name knl05.ftm.alcf.anl.gov Result Size 1794777221 Collection start time 15:00:58 06/01/2017 UTC Collection stop time 15:03:03 06/01/2017 UTC CPU --- Parameter r001runsa ----------------- --------------------------------------------- Name Intel(R) Processor code named Knights Landing Frequency 1296995999 Logical CPU Count 256 Summary ------- Elapsed Time: 124.992 CPU Time: 6677.394 Average CPU Usage: 53.360 CPI Rate: 3.738 Event summary ------------- Hardware Event Type Hardware Event Count:Self Hardware Event Sample Count:Self Events Per Sample ------------------------ ------------------------- -------------------------------- ----------------- CPU_CLK_UNHALTED.THREAD 6661480800000 2896296 2300000 CPU_CLK_UNHALTED.REF_TSC 8660553400000 3765458 2300000 INST_RETIRED.ANY 1781975600000 774772 2300000 amplxe: Executing actions 100 % done On Fri, Jan 6, 2017 at 9:57 AM D'mello, Michael <michael.dmello(a)intel.com> wrote: Will, This looks good. One more test: amplxe-cl -collect-with runsa -knob event-config=CPU_CLK_UNHALTED.THREAD:sa=2300000,CPU_CLK_UNHALTED.REF_TSC:sa=2300000,INST_RETIRED.ANY:sa=2300000 ./a.out If this works, we can do a similar thing with hpc-performance & memory access. I will send you those command lines. Still checking on a better solution. Regards -michael *From:* Will Boyd [mailto:[email protected]] *Sent:* Friday, January 06, 2017 8:38 AM *To:* D'mello, Michael <michael.dmello(a)intel.com>; Hammond, Jeff R < jeff.r.hammond(a)intel.com>; intel-nda(a)jlse.anl.gov *Subject:* Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi Michael, I am running on the machine named "KNL" - in particular, I most recently ran on node "knl05". I ran the command you suggested and the following is the output: $ amplxe-cl -collect-with runsa –analyze-system –duration 5 amplxe: Collection started. To stop the collection, either press CTRL-C or enter from another console window: amplxe-cl -r /home/wboyd/r000runsa -command stop. amplxe: Collection detached. amplxe: Collection stopped. amplxe: Using result path `/home/wboyd/r000runsa' amplxe: Executing actions 100 % done amplxe: Error: 0x40000025 (Inapplicable report) -- The report 'summary' is not applicable to the result /home/wboyd/r000runsa/r000runsa.amplxe. Let me know if you have any insights based on the concluding error message. Best, Will On Thu, Jan 5, 2017 at 8:28 PM D'mello, Michael <michael.dmello(a)intel.com> wrote: Hi Will, For some reason, I am not able to log into my account on the JLSE login node. My progress on the problem has therefore been delayed. While I sort out my login problems, could you try: Ø amplxe-cl -collect-with runsa –analyze-system –duration 5 Send me the output of this command. Also which JLSE KNL are you using? Regards -michael *From:* Will Boyd [mailto:[email protected]] *Sent:* Thursday, January 05, 2017 10:55 AM *To:* D'mello, Michael <michael.dmello(a)intel.com>; Hammond, Jeff R < jeff.r.hammond(a)intel.com>; intel-nda(a)jlse.anl.gov *Subject:* Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi For some reason, "hpc-performance" is not provided as an "Analysis Type" in the GUI when the Intel Xeon Phi is selected as the "Analysis Target." Nevertheless, I selected "memory-access" as an "Analysis Type" and produced the following command line: amplxe-cl -target-system mic-native:mic0 -collect memory-access -knob analyze-openmp=true -app-working-dir /home/wboyd/ecp-benchmarks/pin-cell -- /home/wboyd/openmc/build/bin/openmc When launched from a KNL node on JLSE, this results in the following error: amplxe: Using target: mic-host-launch:mic0 amplxe: Error: Amplifier cannot detect Intel Xeon Phi coprocessor configuration. amplxe: Error: Amplifier cannot detect Intel Xeon Phi coprocessor configuration. Thanks in advance for any advice on how to sidestep this issue. On Thu, Jan 5, 2017 at 8:13 AM Will Boyd <wbinventor(a)gmail.com> wrote: Thank you Michael. I don't have root privileges on JLSE, but I will try to extract the command line from the GUI as a workaround. Thanks for looking into this, I really appreciate the help. On Thu, Jan 5, 2017, 1:23 AM D'mello, Michael <michael.dmello(a)intel.com> wrote: Will, >From what I can tell, the system you are on seems to be configured to use the Linux “perf” collector by default. For “hpc-performance” to run with this collector, you will have to configure “perf” in system wide mode. The error you were seeing seems to be related to this. The following page provides some details: https://software.intel.com/en-us/perf_collection_from_lin (I have listed the relevant section below). Unfortunately, the information provided will not help directly (unless you have root privelages on jlse). One workaround is to configure the analysis in the gui & output the command line (click on the “Command Line” button). You will have to check the “Use –collect with action” box to get the command line you need. This approach should work, but as you will see the command line is complicated. You can certainly try this, but I believe there is a simpler workaround. More on this shortly. Regards -michael PS: The relevant section on the page is: *NOTE* · For uncore events collection, configure Perf to run in the system-wide mode by setting the /proc/sys/kernel/perf_event_paranoid value to 0 or less (root privileges are required). · For the kernel modules resolution <https://software.intel.com/node/84ddf2a4-d4a6-4027-92e3-dce7b0fd7044#GUID-8…>, make sure you have enough permissions to read kernel symbols information from the /proc/kallsyms file. Perf-based driverless collection can be used for running Advanced Hotspots, General Exploration and Custom event-based sampling analysis types on Linux and Android OS. If the uncore events support is available on the system, the VTune Amplifier may also use the Perf collection for Memory Access, HPC Performance Characterization and General Exploration analysis types with the *Analyze memory bandwidth* option enabled. *From:* Will Boyd [mailto:[email protected]] *Sent:* Wednesday, January 04, 2017 8:36 PM *To:* D'mello, Michael <michael.dmello(a)intel.com>; Hammond, Jeff R < jeff.r.hammond(a)intel.com>; intel-nda(a)jlse.anl.gov *Subject:* Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi Michael, Yes, that command works, along with "concurrency" and "locksandwaits". Only the "hpc-performance" and "memory-access" fail on KNL. Will On Wed, Jan 4, 2017, 8:09 PM D'mello, Michael <michael.dmello(a)intel.com> wrote: Hi Will, Does this command work? > amplxe-cl –collect advanced-hotspots openmc Regards -michael *From:* Will Boyd [mailto:[email protected]] *Sent:* Wednesday, January 04, 2017 4:25 PM *To:* Hammond, Jeff R <jeff.r.hammond(a)intel.com>; D'mello, Michael < michael.dmello(a)intel.com>; intel-nda(a)jlse.anl.gov *Subject:* Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi I am trying to run VTune on KNL but am running into the following error: $ amplxe-cl -collect hpc-performance openmc amplxe: Error: both cgroup and no-aggregation modes only available in system-wide mode usage: perf stat [<options>] [<command>] -G, --cgroup <name> monitor event in cgroup name only -A, --no-aggr disable CPU count aggregation -a, --all-cpus system-wide collection from all CPUs This command works fine on a Haswell node, but breaks when I run it on KNL. I am able to run VTune with the "hotspots" collection argument without on KNL. Does anyone know how to resolve this issue? Thanks, Will On Tue, Dec 13, 2016 at 6:22 PM Hammond, Jeff R <jeff.r.hammond(a)intel.com> wrote: FWIW based upon my experience trying unsuccessfully to debug why NWChem won’t run in the Vtune GUI, I recommend always using Vtune CLI. It’s a bad habit to get used to fancy features like GUIs and dynamic memory allocation if yo

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Re: [JLSE-Intel-NDA] Access for ipmitool
by Alekseev, Yury 06 Jan '17

06 Jan '17

Hi, You may want to try default ADMIN for both username and password. If it does not work then IPMI is probably not configured. Even if IPMI is configured, it may now allow you to monitor the power consumption. For example, Colfax Ninja KNL boxes are not capable of doing it. Regards, Yuri ________________________________ From: intel-nda-bounces(a)lists.jlse.anl.gov [intel-nda-bounces(a)lists.jlse.anl.gov] on behalf of Will Boyd [wbinventor(a)gmail.com] Sent: Friday, January 06, 2017 4:59 PM To: intel-nda(a)jlse.anl.gov Subject: [JLSE-Intel-NDA] Access for ipmitool Hello, I am interested in using ipmitool to monitor the power of my application on KNL. What password should I use to run ipmitool? Thank you, Will Boyd

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[JLSE-Intel-NDA] Access for ipmitool
by Will Boyd 06 Jan '17

06 Jan '17

Hello, I am interested in using ipmitool to monitor the power of my application on KNL. What password should I use to run ipmitool? Thank you, Will Boyd

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Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi
by D'mello, Michael 06 Jan '17

06 Jan '17

I was too optimistic on the event names. Also, it looks like that kernel parameter will have to set. More shortly. -michael From: Will Boyd [mailto:[email protected]] Sent: Friday, January 06, 2017 9:56 AM To: D'mello, Michael <michael.dmello(a)intel.com>; Hammond, Jeff R <jeff.r.hammond(a)intel.com>; intel-nda(a)jlse.anl.gov Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi Thanks Michael. I tried running the "hpc-performance" command but it led to this: amplxe: Error: Cannot find knob dram-bandwidth-limits. For a list of available knobs, use –help collect-with runsa After removing the dram-bandwith-limits knob, it errored out with the same error message I've seen due to "perf": amplxe: Warning: To profile kernel modules during the session, make sure they are available in the /lib/modules/kernel_version/ location. ERROR: Event CYCLE_ACTIVITY.STALLS_L1D_MISS discarded since the event is invalid or the device does not exist ERROR: Event CYCLE_ACTIVITY.STALLS_L2_MISS discarded since the event is invalid or the device does not exist ERROR: Event CYCLE_ACTIVITY.STALLS_MEM_ANY discarded since the event is invalid or the device does not exist ERROR: Event CYCLE_ACTIVITY.STALLS_TOTAL discarded since the event is invalid or the device does not exist ERROR: Event IDQ_UOPS_NOT_DELIVERED.CORE discarded since the event is invalid or the device does not exist ERROR: Event INT_MISC.RECOVERY_CYCLES discarded since the event is invalid or the device does not exist ERROR: Event MEM_LOAD_UOPS_RETIRED.L3_HIT_PS discarded since the event is invalid or the device does not exist ERROR: Event MEM_LOAD_UOPS_RETIRED.L3_MISS_PS discarded since the event is invalid or the device does not exist ERROR: Event OFFCORE_REQUESTS_OUTSTANDING.CYCLES_WITH_DEMAND_DATA_RD discarded since the event is invalid or the device does not exist ERROR: Event OFFCORE_REQUESTS_OUTSTANDING.DEMAND_DATA_RD_GE_6 discarded since the event is invalid or the device does not exist ERROR: Event RESOURCE_STALLS.SB<http://RESOURCE_STALLS.SB> discarded since the event is invalid or the device does not exist ERROR: Event RS_EVENTS.EMPTY_CYCLES discarded since the event is invalid or the device does not exist ERROR: Event UOPS_EXECUTED.CYCLES_GE_1_UOP_EXEC discarded since the event is invalid or the device does not exist ERROR: Event UOPS_EXECUTED.CYCLES_GE_2_UOPS_EXEC discarded since the event is invalid or the device does not exist ERROR: Event UOPS_EXECUTED.CYCLES_GE_3_UOPS_EXEC discarded since the event is invalid or the device does not exist ERROR: Event UOPS_ISSUED.ANY discarded since the event is invalid or the device does not exist ERROR: Event UOPS_RETIRED.RETIRE_SLOTS discarded since the event is invalid or the device does not exist ERROR: Event IDQ_UOPS_NOT_DELIVERED.CYCLES_0_UOPS_DELIV.CORE discarded since the event is invalid or the device does not exist ERROR: Event OFFCORE_REQUESTS_OUTSTANDING.ALL_DATA_RD:cmask=4 discarded since the event is invalid or the device does not exist ERROR: Event OFFCORE_REQUESTS_OUTSTANDING.CYCLES_WITH_DATA_RD discarded since the event is invalid or the device does not exist ERROR: Event FP_ARITH_INST_RETIRED.SCALAR_SINGLE discarded since the event is invalid or the device does not exist ERROR: Event FP_ARITH_INST_RETIRED.128B_PACKED_SINGLE discarded since the event is invalid or the device does not exist ERROR: Event FP_ARITH_INST_RETIRED.256B_PACKED_SINGLE discarded since the event is invalid or the device does not exist ERROR: Event FP_ARITH_INST_RETIRED.SCALAR_DOUBLE discarded since the event is invalid or the device does not exist ERROR: Event FP_ARITH_INST_RETIRED.128B_PACKED_DOUBLE discarded since the event is invalid or the device does not exist ERROR: Event FP_ARITH_INST_RETIRED.256B_PACKED_DOUBLE discarded since the event is invalid or the device does not exist ERROR: Event INST_RETIRED.X87 discarded since the event is invalid or the device does not exist amplxe: Error: both cgroup and no-aggregation modes only available in system-wide mode usage: perf stat [<options>] [<command>] -G, --cgroup <name> monitor event in cgroup name only -A, --no-aggr disable CPU count aggregation -a, --all-cpus system-wide collection from all CPUs On Fri, Jan 6, 2017 at 10:45 AM D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>> wrote: Great. For convenience, you may want to script this, but here is the line for hpc performance: amplxe-cl -collect-with runsa -knob event-config=CPU_CLK_UNHALTED.THREAD:sa=2300000,CPU_CLK_UNHALTED.REF_TSC:sa=2300000,INST_RETIRED.ANY:sa=2300000,CYCLE_ACTIVITY.STALLS_L1D_MISS:sa=2000003,CYCLE_ACTIVITY.STALLS_L2_MISS:sa=2000003,CYCLE_ACTIVITY.STALLS_MEM_ANY:sa=2000003,CYCLE_ACTIVITY.STALLS_TOTAL:sa=2000003,IDQ_UOPS_NOT_DELIVERED.CORE:sa=2000003,INT_MISC.RECOVERY_CYCLES:sa=2000003,MEM_LOAD_UOPS_RETIRED.L3_HIT_PS:sa=50003,MEM_LOAD_UOPS_RETIRED.L3_MISS_PS:sa=100003,OFFCORE_REQUESTS_OUTSTANDING.CYCLES_WITH_DEMAND_DATA_RD:sa=2000003,OFFCORE_REQUESTS_OUTSTANDING.DEMAND_DATA_RD_GE_6:sa=2000003,RESOURCE_STALLS.SB:sa=2000003,RS_EVENTS.EMPTY_CYCLES:sa=2000003,UOPS_EXECUTED.CYCLES_GE_1_UOP_EXEC:sa=2000003,UOPS_EXECUTED.CYCLES_GE_2_UOPS_EXEC:sa=2000003,UOPS_EXECUTED.CYCLES_GE_3_UOPS_EXEC:sa=2000003,UOPS_ISSUED.ANY:sa=2000003,UOPS_RETIRED.RETIRE_SLOTS:sa=2000003,IDQ_UOPS_NOT_DELIVERED.CYCLES_0_UOPS_DELIV.CORE:sa=2000003,OFFCORE_REQUESTS_OUTSTANDING.ALL_DATA_RD:cmask=4:sa=2000003,OFFCORE_REQUESTS_OUTSTANDING.CYCLES_WITH_DATA_RD:sa=2000003,FP_ARITH_INST_RETIRED.SCALAR_SINGLE:sa=2000003,FP_ARITH_INST_RETIRED.128B_PACKED_SINGLE:sa=2000003,FP_ARITH_INST_RETIRED.256B_PACKED_SINGLE:sa=2000003,FP_ARITH_INST_RETIRED.SCALAR_DOUBLE:sa=2000003,FP_ARITH_INST_RETIRED.128B_PACKED_DOUBLE:sa=2000003,FP_ARITH_INST_RETIRED.256B_PACKED_DOUBLE:sa=2000003,INST_RETIRED.X87:sa=2000003 -knob collectMemBandwidth=true -knob dram-bandwidth-limits=true -knob analyze-loops=true -knob analyze-openmp=true ./a.out Also, feel free to remove the ‘:sa=xxxxx’ parameter specifications. You may find this (slightly dated) video useful: https://software.intel.com/en-us/videos/intel-vtune-amplifier-xe-video-tuto… More shortly. -michael From: Will Boyd [mailto:[email protected]<mailto:[email protected]>] Sent: Friday, January 06, 2017 9:36 AM To: D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>>; Hammond, Jeff R <jeff.r.hammond(a)intel.com<mailto:[email protected]>>; intel-nda(a)jlse.anl.gov<mailto:[email protected]> Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi Michael, The output for that command was the following: ]$ amplxe-cl -collect-with runsa -knob event-config=CPU_CLK_UNHALTED.THREAD:sa=2300000,CPU_CLK_UNHALTED.REF_TSC:sa=2300000,INST_RETIRED.ANY:sa=2300000 openmc amplxe: Warning: To profile kernel modules during the session, make sure they are available in the /lib/modules/kernel_version/ location. amplxe: Collection started. To stop the collection, either press CTRL-C or enter from another console window: amplxe-cl -r /home/wboyd/ecp-benchmarks/pin-cell/r001runsa -command stop. ... amplxe: Collection stopped. amplxe: Using result path `/home/wboyd/ecp-benchmarks/pin-cell/r001runsa' amplxe: Executing actions 0 % amplxe: Warning: The result contains a lot of raw data. Finalization may take much time. Use the -finalization-mode=deferred option to finalize the result on a faster single-thread performance machine. amplxe: Executing actions 12 % Loading '91917.perf' file amplxe: Executing actions 19 % Resolving information for `libhdf5_fortran.so.10 amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/jbd2/jbd2.ko'. amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/nfs/nfs.ko'. amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/ext4/ext4.ko'. amplxe: Executing actions 19 % Resolving information for `libhdf5_hl.so.100.0.0 amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/drivers/ata/libahci.ko'. amplxe: Executing actions 19 % Resolving information for `libahci.ko' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/libc-2.17.so<http://libc-2.17.so>'. amplxe: Executing actions 19 % Resolving information for `libpthread-2.17.so<http://libpthread-2.17.so>' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/libpthread-2.17.so<http://libpthread-2.17.so>'. amplxe: Executing actions 20 % Resolving information for `ld-2.17.so<http://ld-2.17.so>' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/ld-2.17.so<http://ld-2.17.so>'. amplxe: Executing actions 20 % Resolving information for `libm-2.17.so<http://libm-2.17.so>' amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/net/sunrpc/sunrpc.ko'. amplxe: Executing actions 20 % Resolving information for `sunrpc.ko' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/libm-2.17.so<http://libm-2.17.so>'. amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/lockd/lockd.ko'. amplxe: Executing actions 20 % Resolving information for `libgomp.so.1.0.0' amplxe: Warning: %CantOpenFile amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/drivers/ata/libata.ko'. amplxe: Executing actions 20 % Resolving information for `libata.ko' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/libgomp.so.1.0.0'. amplxe: Executing actions 21 % Resolving information for `libgfortran.so.3.0.0' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/libgfortran.so.3.0.0'. amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/drivers/net/ethernet/intel/igb/igb.ko'. amplxe: Executing actions 21 % Resolving information for `libmpi.so.0.0.0' amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/nfs/nfsv3.ko'. amplxe: Executing actions 21 % Resolving information for `libgcc_s-4.8.5-201507 amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/libgcc_s-4.8.5-20150702.so.1'. amplxe: Executing actions 75 % Generating a report Collection and Platform Info ---------------------------- Parameter r001runsa ------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Application Command Line openmc Operating System 3.10.0-514.2.2.el7.x86_64 NAME="Red Hat Enterprise Linux Server" VERSION="7.3 (Maipo)" ID="rhel" ID_LIKE="fedora" VERSION_ID="7.3" PRETTY_NAME="Red Hat Enterprise Linux Server 7.3 (Maipo)" ANSI_COLOR="0;31" CPE_NAME="cpe:/o:redhat:enterprise_linux:7.3:GA:server" HOME_URL="https://www.redhat.com/" BUG_REPORT_URL="https://bugzilla.redhat.com/" REDHAT_BUGZILLA_PRODUCT="Red Hat Enterprise Linux 7" REDHAT_BUGZILLA_PRODUCT_VERSION=7.3 REDHAT_SUPPORT_PRODUCT="Red Hat Enterprise Linux" REDHAT_SUPPORT_PRODUCT_VERSION="7.3" Computer Name knl05.ftm.alcf.anl.gov<http://knl05.ftm.alcf.anl.gov> Result Size 1794777221 Collection start time 15:00:58 06/01/2017 UTC Collection stop time 15:03:03 06/01/2017 UTC CPU --- Parameter r001runsa ----------------- --------------------------------------------- Name Intel(R) Processor code named Knights Landing Frequency 1296995999 Logical CPU Count 256 Summary ------- Elapsed Time: 124.992 CPU Time: 6677.394 Average CPU Usage: 53.360 CPI Rate: 3.738 Event summary ------------- Hardware Event Type Hardware Event Count:Self Hardware Event Sample Count:Self Events Per Sample ------------------------ ------------------------- -------------------------------- ----------------- CPU_CLK_UNHALTED.THREAD 6661480800000 2896296 2300000 CPU_CLK_UNHALTED.REF_TSC 8660553400000 3765458 2300000 INST_RETIRED.ANY 1781975600000 774772 2300000 amplxe: Executing actions 100 % done On Fri, Jan 6, 2017 at 9:57 AM D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>> wrote: Will, This looks good. One more test: amplxe-cl -collect-with runsa -knob event-config=CPU_CLK_UNHALTED.THREAD:sa=2300000,CPU_CLK_UNHALTED.REF_TSC:sa=2300000,INST_RETIRED.ANY:sa=2300000 ./a.out If this works, we can do a similar thing with hpc-performance & memory access. I will send you those command lines. Still checking on a better solution. Regards -michael From: Will Boyd [mailto:[email protected]<mailto:[email protected]>] Sent: Friday, January 06, 2017 8:38 AM To: D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>>; Hammond, Jeff R <jeff.r.hammond(a)intel.com<mailto:[email protected]>>; intel-nda(a)jlse.anl.gov<mailto:[email protected]> Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi Michael, I am running on the machine named "KNL" - in particular, I most recently ran on node "knl05". I ran the command you suggested and the following is the output: $ amplxe-cl -collect-with runsa –analyze-system –duration 5 amplxe: Collection started. To stop the collection, either press CTRL-C or enter from another console window: amplxe-cl -r /home/wboyd/r000runsa -command stop. amplxe: Collection detached. amplxe: Collection stopped. amplxe: Using result path `/home/wboyd/r000runsa' amplxe: Executing actions 100 % done amplxe: Error: 0x40000025 (Inapplicable report) -- The report 'summary' is not applicable to the result /home/wboyd/r000runsa/r000runsa.amplxe. Let me know if you have any insights based on the concluding error message. Best, Will On Thu, Jan 5, 2017 at 8:28 PM D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>> wrote: Hi Will, For some reason, I am not able to log into my account on the JLSE login node. My progress on the problem has therefore been delayed. While I sort out my login problems, could you try: > amplxe-cl -collect-with runsa –analyze-system –duration 5 Send me the output of this command. Also which JLSE KNL are you using? Regards -michael From: Will Boyd [mailto:[email protected]<mailto:[email protected]>] Sent: Thursday, January 05, 2017 10:55 AM To: D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>>; Hammond, Jeff R <jeff.r.hammond(a)intel.com<mailto:[email protected]>>; intel-nda(a)jlse.anl.gov<mailto:[email protected]> Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi For some reason, "hpc-performance" is not provided as an "Analysis Type" in the GUI when the Intel Xeon Phi is selected as the "Analysis Target." Nevertheless, I selected "memory-access" as an "Analysis Type" and produced the following command line: amplxe-cl -target-system mic-native:mic0 -collect memory-access -knob analyze-openmp=true -app-working-dir /home/wboyd/ecp-benchmarks/pin-cell -- /home/wboyd/openmc/build/bin/openmc When launched from a KNL node on JLSE, this results in the following error: amplxe: Using target: mic-host-launch:mic0 amplxe: Error: Amplifier cannot detect Intel Xeon Phi coprocessor configuration. amplxe: Error: Amplifier cannot detect Intel Xeon Phi coprocessor configuration. Thanks in advance for any advice on how to sidestep this issue. On Thu, Jan 5, 2017 at 8:13 AM Will Boyd <wbinventor(a)gmail.com<mailto:[email protected]>> wrote: Thank you Michael. I don't have root privileges on JLSE, but I will try to extract the command line from the GUI as a workaround. Thanks for looking into this, I really appreciate the help. On Thu, Jan 5, 2017, 1:23 AM D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>> wrote: Will, From what I can tell, the system you are on seems to be configured to use the Linux “perf” collector by default. For “hpc-performance” to run with this collector, you will have to configure “perf” in system wide mode. The error you were seeing seems to be related to this. The following page provides some details: https://software.intel.com/en-us/perf_collection_from_lin (I have listed the relevant section below). Unfortunately, the information provided will not help directly (unless you have root privelages on jlse). One workaround is to configure the analysis in the gui & output the command line (click on the “Command Line” button). You will have to check the “Use –collect with action” box to get the command line you need. This approach should work, but as you will see the command line is complicated. You can certainly try this, but I believe there is a simpler workaround. More on this shortly. Regards -michael PS: The relevant section on the page is: NOTE • For uncore events collection, configure Perf to run in the system-wide mode by setting the /proc/sys/kernel/perf_event_paranoid value to 0 or less (root privileges are required). • For the kernel modules resolution<https://software.intel.com/node/84ddf2a4-d4a6-4027-92e3-dce7b0fd7044#GUID-8…>, make sure you have enough permissions to read kernel symbols information from the /proc/kallsyms file. Perf-based driverless collection can be used for running Advanced Hotspots, General Exploration and Custom event-based sampling analysis types on Linux and Android OS. If the uncore events support is available on the system, the VTune Amplifier may also use the Perf collection for Memory Access, HPC Performance Characterization and General Exploration analysis types with the Analyze memory bandwidth option enabled. From: Will Boyd [mailto:[email protected]<mailto:[email protected]>] Sent: Wednesday, January 04, 2017 8:36 PM To: D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>>; Hammond, Jeff R <jeff.r.hammond(a)intel.com<mailto:[email protected]>>; intel-nda(a)jlse.anl.gov<mailto:[email protected]> Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi Michael, Yes, that command works, along with "concurrency" and "locksandwaits". Only the "hpc-performance" and "memory-access" fail on KNL. Will On Wed, Jan 4, 2017, 8:09 PM D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>> wrote: Hi Will, Does this command work? > amplxe-cl –collect advanced-hotspots openmc Regards -michael From: Will Boyd [mailto:[email protected]<mailto:[email protected]>] Sent: Wednesday, January 04, 2017 4:25 PM To: Hammond, Jeff R <jeff.r.hammond(a)intel.com<mailto:[email protected]>>; D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>>; intel-nda(a)jlse.anl.gov<mailto:[email protected]> Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi I am trying to run VTune on KNL but am running into the following error: $ amplxe-cl -collect hpc-performance openmc amplxe: Error: both cgroup and no-aggregation modes only available in system-wide mode usage: perf stat [<options>] [<command>] -G, --cgroup <name> monitor event in cgroup name only -A, --no-aggr disable CPU count aggregation -a, --all-cpus system-wide collection from all CPUs This command works fine on a Haswell node, but breaks when I run it on KNL. I am able to run VTune with the "hotspots" collection argument without on KNL. Does anyone know how to resolve this issue? Thanks, Will On Tue, Dec 13, 2016 at 6:22 PM Hammond, Jeff R <jeff.r.hammond(a)intel.com<mailto:[email protected]>> wrote: FWIW based upon my experience trying unsuccessfully to debug why NWChem won’t run in the Vtune GUI, I recommend always using Vtune CLI. It’s a bad habit to get used to fancy features like GUIs and dynamic memory allocation if you want to be a serious HPC person ;-) Jeff From: <intel-nda-bounces(a)lists.jlse.anl.gov<mailto:[email protected]>> on behalf of Will Boyd <wbinventor(a)gmail.com<mailto:[email protected]>> Date: Tuesday, December 13, 2016 at 3:00 PM To: "D'mello, Michael" <michael.dmello(a)intel.com<mailto:[email protected]>>, "intel-nda(a)jlse.anl.gov<mailto:[email protected]>" <intel-nda(a)jlse.anl.gov<mailto:[email protected]>> Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi Thank you Michael and Jeff. Downloading the results from the VTune CLI and importing them into the VTune GUI locally works great. On Tue, Dec 13, 2016 at 5:35 PM D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>> wrote: Hi Will, You can use the command line interface to collect the profiling information. For example: > amplxe_cl –collect hotspots ./a.out You can then move the results (entire directory) over to the environment (Windows or Linux) in which you would like to view the results. regards -michael From: intel-nda-bounces(a)lists.jlse.anl.gov<mailto:[email protected]> [mailto:[email protected]<mailto:[email protected]>] On Behalf Of Will Boyd Sent: Tuesday, December 13, 2016 4:30 PM To: intel-nda(a)jlse.anl.gov<mailto:[email protected]> Subject: [JLSE-Intel-NDA] Using VTune remotely on the Phi I am interested in profiling an application on the Phi using Intel VTune. I would like to use the graphical interface for VTune, but have been unable to launch VTune remotely using my local instance of VTune. Does anyone have any recommendations for how to remotely profile my application on the Phi but view the results locally with the VTune GUI on my workstation? Thanks, Will

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Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi
by Will Boyd 06 Jan '17

06 Jan '17

Thanks Michael. I tried running the "hpc-performance" command but it led to this: amplxe: Error: Cannot find knob dram-bandwidth-limits. For a list of available knobs, use –help collect-with runsa After removing the dram-bandwith-limits knob, it errored out with the same error message I've seen due to "perf": amplxe: Warning: To profile kernel modules during the session, make sure they are available in the /lib/modules/kernel_version/ location. ERROR: Event CYCLE_ACTIVITY.STALLS_L1D_MISS discarded since the event is invalid or the device does not exist ERROR: Event CYCLE_ACTIVITY.STALLS_L2_MISS discarded since the event is invalid or the device does not exist ERROR: Event CYCLE_ACTIVITY.STALLS_MEM_ANY discarded since the event is invalid or the device does not exist ERROR: Event CYCLE_ACTIVITY.STALLS_TOTAL discarded since the event is invalid or the device does not exist ERROR: Event IDQ_UOPS_NOT_DELIVERED.CORE discarded since the event is invalid or the device does not exist ERROR: Event INT_MISC.RECOVERY_CYCLES discarded since the event is invalid or the device does not exist ERROR: Event MEM_LOAD_UOPS_RETIRED.L3_HIT_PS discarded since the event is invalid or the device does not exist ERROR: Event MEM_LOAD_UOPS_RETIRED.L3_MISS_PS discarded since the event is invalid or the device does not exist ERROR: Event OFFCORE_REQUESTS_OUTSTANDING.CYCLES_WITH_DEMAND_DATA_RD discarded since the event is invalid or the device does not exist ERROR: Event OFFCORE_REQUESTS_OUTSTANDING.DEMAND_DATA_RD_GE_6 discarded since the event is invalid or the device does not exist ERROR: Event RESOURCE_STALLS.SB discarded since the event is invalid or the device does not exist ERROR: Event RS_EVENTS.EMPTY_CYCLES discarded since the event is invalid or the device does not exist ERROR: Event UOPS_EXECUTED.CYCLES_GE_1_UOP_EXEC discarded since the event is invalid or the device does not exist ERROR: Event UOPS_EXECUTED.CYCLES_GE_2_UOPS_EXEC discarded since the event is invalid or the device does not exist ERROR: Event UOPS_EXECUTED.CYCLES_GE_3_UOPS_EXEC discarded since the event is invalid or the device does not exist ERROR: Event UOPS_ISSUED.ANY discarded since the event is invalid or the device does not exist ERROR: Event UOPS_RETIRED.RETIRE_SLOTS discarded since the event is invalid or the device does not exist ERROR: Event IDQ_UOPS_NOT_DELIVERED.CYCLES_0_UOPS_DELIV.CORE discarded since the event is invalid or the device does not exist ERROR: Event OFFCORE_REQUESTS_OUTSTANDING.ALL_DATA_RD:cmask=4 discarded since the event is invalid or the device does not exist ERROR: Event OFFCORE_REQUESTS_OUTSTANDING.CYCLES_WITH_DATA_RD discarded since the event is invalid or the device does not exist ERROR: Event FP_ARITH_INST_RETIRED.SCALAR_SINGLE discarded since the event is invalid or the device does not exist ERROR: Event FP_ARITH_INST_RETIRED.128B_PACKED_SINGLE discarded since the event is invalid or the device does not exist ERROR: Event FP_ARITH_INST_RETIRED.256B_PACKED_SINGLE discarded since the event is invalid or the device does not exist ERROR: Event FP_ARITH_INST_RETIRED.SCALAR_DOUBLE discarded since the event is invalid or the device does not exist ERROR: Event FP_ARITH_INST_RETIRED.128B_PACKED_DOUBLE discarded since the event is invalid or the device does not exist ERROR: Event FP_ARITH_INST_RETIRED.256B_PACKED_DOUBLE discarded since the event is invalid or the device does not exist ERROR: Event INST_RETIRED.X87 discarded since the event is invalid or the device does not exist amplxe: Error: both cgroup and no-aggregation modes only available in system-wide mode usage: perf stat [<options>] [<command>] -G, --cgroup <name> monitor event in cgroup name only -A, --no-aggr disable CPU count aggregation -a, --all-cpus system-wide collection from all CPUs On Fri, Jan 6, 2017 at 10:45 AM D'mello, Michael <michael.dmello(a)intel.com> wrote: > Great. For convenience, you may want to script this, but here is the line > for hpc performance: > > > > amplxe-cl -collect-with runsa -knob > event-config=CPU_CLK_UNHALTED.THREAD:sa=2300000,CPU_CLK_UNHALTED.REF_TSC:sa=2300000,INST_RETIRED.ANY:sa=2300000,CYCLE_ACTIVITY.STALLS_L1D_MISS:sa=2000003,CYCLE_ACTIVITY.STALLS_L2_MISS:sa=2000003,CYCLE_ACTIVITY.STALLS_MEM_ANY:sa=2000003,CYCLE_ACTIVITY.STALLS_TOTAL:sa=2000003,IDQ_UOPS_NOT_DELIVERED.CORE:sa=2000003,INT_MISC.RECOVERY_CYCLES:sa=2000003,MEM_LOAD_UOPS_RETIRED.L3_HIT_PS:sa=50003,MEM_LOAD_UOPS_RETIRED.L3_MISS_PS:sa=100003,OFFCORE_REQUESTS_OUTSTANDING.CYCLES_WITH_DEMAND_DATA_RD:sa=2000003,OFFCORE_REQUESTS_OUTSTANDING.DEMAND_DATA_RD_GE_6:sa=2000003,RESOURCE_STALLS.SB:sa=2000003,RS_EVENTS.EMPTY_CYCLES:sa=2000003,UOPS_EXECUTED.CYCLES_GE_1_UOP_EXEC:sa=2000003,UOPS_EXECUTED.CYCLES_GE_2_UOPS_EXEC:sa=2000003,UOPS_EXECUTED.CYCLES_GE_3_UOPS_EXEC:sa=2000003,UOPS_ISSUED.ANY:sa=2000003,UOPS_RETIRED.RETIRE_SLOTS:sa=2000003,IDQ_UOPS_NOT_DELIVERED.CYCLES_0_UOPS_DELIV.CORE:sa=2000003,OFFCORE_REQUESTS_OUTSTANDING.ALL_DATA_RD:cmask=4:sa=2000003,OFFCORE_REQUESTS_OUTSTANDING.CYCLES_WITH_DATA_RD:sa=2000003,FP_ARITH_INST_RETIRED.SCALAR_SINGLE:sa=2000003,FP_ARITH_INST_RETIRED.128B_PACKED_SINGLE:sa=2000003,FP_ARITH_INST_RETIRED.256B_PACKED_SINGLE:sa=2000003,FP_ARITH_INST_RETIRED.SCALAR_DOUBLE:sa=2000003,FP_ARITH_INST_RETIRED.128B_PACKED_DOUBLE:sa=2000003,FP_ARITH_INST_RETIRED.256B_PACKED_DOUBLE:sa=2000003,INST_RETIRED.X87:sa=2000003 > -knob collectMemBandwidth=true -knob dram-bandwidth-limits=true -knob > analyze-loops=true -knob analyze-openmp=true ./a.out > > > > Also, feel free to remove the ‘:sa=xxxxx’ parameter specifications. > > > > You may find this (slightly dated) video useful: > https://software.intel.com/en-us/videos/intel-vtune-amplifier-xe-video-tuto… > > > > More shortly. > > > > -michael > > > > *From:* Will Boyd [mailto:[email protected]] > *Sent:* Friday, January 06, 2017 9:36 AM > > > *To:* D'mello, Michael <michael.dmello(a)intel.com>; Hammond, Jeff R < > jeff.r.hammond(a)intel.com>; intel-nda(a)jlse.anl.gov > *Subject:* Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi > > > > Michael, > > > > The output for that command was the following: > > > > ]$ amplxe-cl -collect-with runsa -knob > event-config=CPU_CLK_UNHALTED.THREAD:sa=2300000,CPU_CLK_UNHALTED.REF_TSC:sa=2300000,INST_RETIRED.ANY:sa=2300000 > openmc > > amplxe: Warning: To profile kernel modules during the session, make sure > they are available in the /lib/modules/kernel_version/ location. > > amplxe: Collection started. To stop the collection, either press CTRL-C or > enter from another console window: amplxe-cl -r > /home/wboyd/ecp-benchmarks/pin-cell/r001runsa -command stop. > > > > ... > > > > amplxe: Collection stopped. > > amplxe: Using result path `/home/wboyd/ecp-benchmarks/pin-cell/r001runsa' > > amplxe: Executing actions 0 % > > > amplxe: Warning: The result contains a lot of raw data. Finalization may > take much time. Use the -finalization-mode=deferred option to finalize the > result on a faster single-thread performance machine. > > amplxe: Executing actions 12 % Loading '91917.perf' file > > > > > amplxe: Executing actions 19 % Resolving information for > `libhdf5_fortran.so.10 > > amplxe: Warning: Cannot locate file > `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/jbd2/jbd2.ko'. > > amplxe: Warning: Cannot locate file > `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/nfs/nfs.ko'. > > amplxe: Warning: Cannot locate file > `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/ext4/ext4.ko'. > > amplxe: Executing actions 19 % Resolving information for > `libhdf5_hl.so.100.0.0 > > amplxe: Warning: Cannot locate file > `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/drivers/ata/libahci.ko'. > > amplxe: Executing actions 19 % Resolving information for `libahci.ko' > > > amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/ > libc-2.17.so'. > > amplxe: Executing actions 19 % Resolving information for ` > libpthread-2.17.so' > > amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/ > libpthread-2.17.so'. > > amplxe: Executing actions 20 % Resolving information for `ld-2.17.so' > > > amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/ > ld-2.17.so'. > > amplxe: Executing actions 20 % Resolving information for `libm-2.17.so' > > > amplxe: Warning: Cannot locate file > `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/net/sunrpc/sunrpc.ko'. > > amplxe: Executing actions 20 % Resolving information for `sunrpc.ko' > > > amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/ > libm-2.17.so'. > > amplxe: Warning: Cannot locate file > `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/lockd/lockd.ko'. > > amplxe: Executing actions 20 % Resolving information for > `libgomp.so.1.0.0' > > amplxe: Warning: %CantOpenFile > > amplxe: Warning: Cannot locate file > `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/drivers/ata/libata.ko'. > > amplxe: Executing actions 20 % Resolving information for `libata.ko' > > > amplxe: Warning: Cannot locate debugging symbols for file > `/usr/lib64/libgomp.so.1.0.0'. > > amplxe: Executing actions 21 % Resolving information for > `libgfortran.so.3.0.0' > > amplxe: Warning: Cannot locate debugging symbols for file > `/usr/lib64/libgfortran.so.3.0.0'. > > amplxe: Warning: Cannot locate file > `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/drivers/net/ethernet/intel/igb/igb.ko'. > > amplxe: Executing actions 21 % Resolving information for `libmpi.so.0.0.0' > > > amplxe: Warning: Cannot locate file > `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/nfs/nfsv3.ko'. > > amplxe: Executing actions 21 % Resolving information for > `libgcc_s-4.8.5-201507 > > amplxe: Warning: Cannot locate debugging symbols for file > `/usr/lib64/libgcc_s-4.8.5-20150702.so.1'. > > amplxe: Executing actions 75 % Generating a report > > > Collection and Platform Info > > ---------------------------- > > Parameter r001runsa > > > > > > > > > ------------------------ > ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- > > Application Command Line openmc > > > > > > > > > Operating System 3.10.0-514.2.2.el7.x86_64 NAME="Red Hat > Enterprise Linux Server" > > VERSION="7.3 (Maipo)" > > ID="rhel" > > ID_LIKE="fedora" > > VERSION_ID="7.3" > > PRETTY_NAME="Red Hat Enterprise Linux Server 7.3 (Maipo)" > > ANSI_COLOR="0;31" > > CPE_NAME="cpe:/o:redhat:enterprise_linux:7.3:GA:server" > > HOME_URL="https://www.redhat.com/" > > BUG_REPORT_URL="https://bugzilla.redhat.com/" > > > > REDHAT_BUGZILLA_PRODUCT="Red Hat Enterprise Linux 7" > > REDHAT_BUGZILLA_PRODUCT_VERSION=7.3 > > REDHAT_SUPPORT_PRODUCT="Red Hat Enterprise Linux" > > REDHAT_SUPPORT_PRODUCT_VERSION="7.3" > > Computer Name knl05.ftm.alcf.anl.gov > > > > > > > > > Result Size 1794777221 > > > > > > > > > Collection start time 15:00:58 06/01/2017 UTC > > > > > > > > Collection stop time 15:03:03 06/01/2017 UTC > > > > > > > > > > > CPU > > --- > > Parameter r001runsa > > ----------------- --------------------------------------------- > > Name Intel(R) Processor code named Knights Landing > > Frequency 1296995999 > > Logical CPU Count 256 > > > > Summary > > ------- > > Elapsed Time: 124.992 > > CPU Time: 6677.394 > > Average CPU Usage: 53.360 > > CPI Rate: 3.738 > > > > Event summary > > ------------- > > Hardware Event Type Hardware Event Count:Self Hardware Event Sample > Count:Self Events Per Sample > > ------------------------ ------------------------- > -------------------------------- ----------------- > > CPU_CLK_UNHALTED.THREAD 6661480800000 > 2896296 2300000 > > CPU_CLK_UNHALTED.REF_TSC 8660553400000 > 3765458 2300000 > > INST_RETIRED.ANY 1781975600000 > 774772 2300000 > > amplxe: Executing actions 100 % done > > > > On Fri, Jan 6, 2017 at 9:57 AM D'mello, Michael <michael.dmello(a)intel.com> > wrote: > > Will, > > > > This looks good. One more test: > > > > amplxe-cl -collect-with runsa -knob > event-config=CPU_CLK_UNHALTED.THREAD:sa=2300000,CPU_CLK_UNHALTED.REF_TSC:sa=2300000,INST_RETIRED.ANY:sa=2300000 > ./a.out > > > > If this works, we can do a similar thing with hpc-performance & memory > access. I will send you those command lines. > > > > Still checking on a better solution. > > > > Regards > > > > -michael > > > > > > *From:* Will Boyd [mailto:[email protected]] > *Sent:* Friday, January 06, 2017 8:38 AM > > > *To:* D'mello, Michael <michael.dmello(a)intel.com>; Hammond, Jeff R < > jeff.r.hammond(a)intel.com>; intel-nda(a)jlse.anl.gov > *Subject:* Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi > > > > Michael, > > > > I am running on the machine named "KNL" - in particular, I most recently > ran on node "knl05". > > > > I ran the command you suggested and the following is the output: > > > > $ amplxe-cl -collect-with runsa –analyze-system –duration 5 > > amplxe: Collection started. To stop the collection, either press CTRL-C or > enter from another console window: amplxe-cl -r /home/wboyd/r000runsa > -command stop. > > amplxe: Collection detached. > > amplxe: Collection stopped. > > amplxe: Using result path `/home/wboyd/r000runsa' > > amplxe: Executing actions 100 % done > > > amplxe: Error: 0x40000025 (Inapplicable report) -- The report 'summary' is > not applicable to the result /home/wboyd/r000runsa/r000runsa.amplxe. > > > > Let me know if you have any insights based on the concluding error message. > > > > Best, > > Will > > > > On Thu, Jan 5, 2017 at 8:28 PM D'mello, Michael <michael.dmello(a)intel.com> > wrote: > > Hi Will, > > > > For some reason, I am not able to log into my account on the JLSE login > node. My progress on the problem has therefore been delayed. > > > > While I sort out my login problems, could you try: > > > > Ø amplxe-cl -collect-with runsa –analyze-system –duration 5 > > > > Send me the output of this command. > > > > Also which JLSE KNL are you using? > > > > Regards > > > > -michael > > > > *From:* Will Boyd [mailto:[email protected]] > *Sent:* Thursday, January 05, 2017 10:55 AM > > > *To:* D'mello, Michael <michael.dmello(a)intel.com>; Hammond, Jeff R < > jeff.r.hammond(a)intel.com>; intel-nda(a)jlse.anl.gov > *Subject:* Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi > > > > For some reason, "hpc-performance" is not provided as an "Analysis Type" > in the GUI when the Intel Xeon Phi is selected as the "Analysis Target." > Nevertheless, I selected "memory-access" as an "Analysis Type" and produced > the following command line: > > > > amplxe-cl -target-system mic-native:mic0 -collect memory-access -knob > analyze-openmp=true -app-working-dir /home/wboyd/ecp-benchmarks/pin-cell -- > /home/wboyd/openmc/build/bin/openmc > > > > When launched from a KNL node on JLSE, this results in the following error: > > > > amplxe: Using target: mic-host-launch:mic0 > > amplxe: Error: Amplifier cannot detect Intel Xeon Phi coprocessor > configuration. > > amplxe: Error: Amplifier cannot detect Intel Xeon Phi coprocessor > configuration. > > > > Thanks in advance for any advice on how to sidestep this issue. > > > > On Thu, Jan 5, 2017 at 8:13 AM Will Boyd <wbinventor(a)gmail.com> wrote: > > Thank you Michael. I don't have root privileges on JLSE, but I will try to > extract the command line from the GUI as a workaround. Thanks for looking > into this, I really appreciate the help. > > > > On Thu, Jan 5, 2017, 1:23 AM D'mello, Michael <michael.dmello(a)intel.com> > wrote: > > Will, > > > > From what I can tell, the system you are on seems to be configured to use > the Linux “perf” collector by default. For “hpc-performance” to run with > this collector, you will have to configure “perf” in system wide mode. The > error you were seeing seems to be related to this. > > > > The following page provides some details: > https://software.intel.com/en-us/perf_collection_from_lin (I have listed > the relevant section below). > > > > Unfortunately, the information provided will not help directly (unless you > have root privelages on jlse). > > > > One workaround is to configure the analysis in the gui & output the > command line (click on the “Command Line” button). You will have to check > the “Use –collect with action” box to get the command line you need. This > approach should work, but as you will see the command line is complicated. > You can certainly try this, but I believe there is a simpler workaround. > More on this shortly. > > > > Regards > > > > -michael > > > > PS: The relevant section on the page is: > > > > *NOTE* > > · For uncore events collection, configure Perf to run in the > system-wide mode by setting the /proc/sys/kernel/perf_event_paranoid value > to 0 or less (root privileges are required). > > · For the kernel modules resolution > <https://software.intel.com/node/84ddf2a4-d4a6-4027-92e3-dce7b0fd7044#GUID-8…>, > make sure you have enough permissions to read kernel symbols information > from the /proc/kallsyms file. > > Perf-based driverless collection can be used for running Advanced > Hotspots, General Exploration and Custom event-based sampling analysis > types on Linux and Android OS. If the uncore events support is available on > the system, the VTune Amplifier may also use the Perf collection for Memory > Access, HPC Performance Characterization and General Exploration analysis > types with the *Analyze memory bandwidth* option enabled. > > > > *From:* Will Boyd [mailto:[email protected]] > *Sent:* Wednesday, January 04, 2017 8:36 PM > *To:* D'mello, Michael <michael.dmello(a)intel.com>; Hammond, Jeff R < > jeff.r.hammond(a)intel.com>; intel-nda(a)jlse.anl.gov > > > *Subject:* Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi > > > > Michael, > > Yes, that command works, along with "concurrency" and "locksandwaits". > Only the "hpc-performance" and "memory-access" fail on KNL. > > Will > > > > On Wed, Jan 4, 2017, 8:09 PM D'mello, Michael <michael.dmello(a)intel.com> > wrote: > > Hi Will, > > > > Does this command work? > > > > > amplxe-cl –collect advanced-hotspots openmc > > > > Regards > > > > -michael > > > > > > > > > > *From:* Will Boyd [mailto:[email protected]] > *Sent:* Wednesday, January 04, 2017 4:25 PM > *To:* Hammond, Jeff R <jeff.r.hammond(a)intel.com>; D'mello, Michael < > michael.dmello(a)intel.com>; intel-nda(a)jlse.anl.gov > > > *Subject:* Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi > > > > I am trying to run VTune on KNL but am running into the following error: > > > > $ amplxe-cl -collect hpc-performance openmc > > amplxe: Error: both cgroup and no-aggregation modes only available in > system-wide mode > > > > usage: perf stat [<options>] [<command>] > > > > -G, --cgroup <name> monitor event in cgroup name only > > -A, --no-aggr disable CPU count aggregation > > -a, --all-cpus system-wide collection from all CPUs > > > > This command works fine on a Haswell node, but breaks when I run it on > KNL. I am able to run VTune with the "hotspots" collection argument without > on KNL. Does anyone know how to resolve this issue? > > > > Thanks, > > Will > > > > On Tue, Dec 13, 2016 at 6:22 PM Hammond, Jeff R <jeff.r.hammond(a)intel.com> > wrote: > > FWIW based upon my experience trying unsuccessfully to debug why NWChem > won’t run in the Vtune GUI, I recommend always using Vtune CLI. It’s a bad > habit to get used to fancy features like GUIs and dynamic memory allocation > if you want to be a serious HPC person ;-) > > > > Jeff > > > > *From: *<intel-nda-bounces(a)lists.jlse.anl.gov> on behalf of Will Boyd < > wbinventor(a)gmail.com> > > *Date: *Tuesday, December 13, 2016 at 3:00 PM > *To: *"D'mello, Michael" <michael.dmello(a)intel.com>, " > intel-nda(a)jlse.anl.gov" <intel-nda(a)jlse.anl.gov> > *Subject: *Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi > > > > Thank you Michael and Jeff. Downloading the results from the VTune CLI and > importing them into the VTune GUI locally works great. > > > > On Tue, Dec 13, 2016 at 5:35 PM D'mello, Michael <michael.dmello(a)intel.com> > wrote: > > Hi Will, > > > > You can use the command line interface to collect the profiling > information. For example: > > > > Ø amplxe_cl –collect hotspots ./a.out > > > > You can then move the results (entire directory) over to the environment > (Windows or Linux) in which you would like to view the results. > > > > regards > > > > -michael > > > > > > *From:* intel-nda-bounces(a)lists.jlse.anl.gov [mailto: > intel-nda-bounces(a)lists.jlse.anl.gov] *On Behalf Of *Will Boyd > *Sent:* Tuesday, December 13, 2016 4:30 PM > *To:* intel-nda(a)jlse.anl.gov > > > *Subject:* [JLSE-Intel-NDA] Using VTune remotely on the Phi > > > > I am interested in profiling an application on the Phi using Intel VTune. > I would like to use the graphical interface for VTune, but have been unable > to launch VTune remotely using my local instance of VTune. Does anyone have > any recommendations for how to remotely profile my application on the Phi > but view the results locally with the VTune GUI on my workstation? > > > > Thanks, > > Will > >

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Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi
by D'mello, Michael 06 Jan '17

06 Jan '17

Great. For convenience, you may want to script this, but here is the line for hpc performance: amplxe-cl -collect-with runsa -knob event-config=CPU_CLK_UNHALTED.THREAD:sa=2300000,CPU_CLK_UNHALTED.REF_TSC:sa=2300000,INST_RETIRED.ANY:sa=2300000,CYCLE_ACTIVITY.STALLS_L1D_MISS:sa=2000003,CYCLE_ACTIVITY.STALLS_L2_MISS:sa=2000003,CYCLE_ACTIVITY.STALLS_MEM_ANY:sa=2000003,CYCLE_ACTIVITY.STALLS_TOTAL:sa=2000003,IDQ_UOPS_NOT_DELIVERED.CORE:sa=2000003,INT_MISC.RECOVERY_CYCLES:sa=2000003,MEM_LOAD_UOPS_RETIRED.L3_HIT_PS:sa=50003,MEM_LOAD_UOPS_RETIRED.L3_MISS_PS:sa=100003,OFFCORE_REQUESTS_OUTSTANDING.CYCLES_WITH_DEMAND_DATA_RD:sa=2000003,OFFCORE_REQUESTS_OUTSTANDING.DEMAND_DATA_RD_GE_6:sa=2000003,RESOURCE_STALLS.SB:sa=2000003,RS_EVENTS.EMPTY_CYCLES:sa=2000003,UOPS_EXECUTED.CYCLES_GE_1_UOP_EXEC:sa=2000003,UOPS_EXECUTED.CYCLES_GE_2_UOPS_EXEC:sa=2000003,UOPS_EXECUTED.CYCLES_GE_3_UOPS_EXEC:sa=2000003,UOPS_ISSUED.ANY:sa=2000003,UOPS_RETIRED.RETIRE_SLOTS:sa=2000003,IDQ_UOPS_NOT_DELIVERED.CYCLES_0_UOPS_DELIV.CORE:sa=2000003,OFFCORE_REQUESTS_OUTSTANDING.ALL_DATA_RD:cmask=4:sa=2000003,OFFCORE_REQUESTS_OUTSTANDING.CYCLES_WITH_DATA_RD:sa=2000003,FP_ARITH_INST_RETIRED.SCALAR_SINGLE:sa=2000003,FP_ARITH_INST_RETIRED.128B_PACKED_SINGLE:sa=2000003,FP_ARITH_INST_RETIRED.256B_PACKED_SINGLE:sa=2000003,FP_ARITH_INST_RETIRED.SCALAR_DOUBLE:sa=2000003,FP_ARITH_INST_RETIRED.128B_PACKED_DOUBLE:sa=2000003,FP_ARITH_INST_RETIRED.256B_PACKED_DOUBLE:sa=2000003,INST_RETIRED.X87:sa=2000003 -knob collectMemBandwidth=true -knob dram-bandwidth-limits=true -knob analyze-loops=true -knob analyze-openmp=true ./a.out Also, feel free to remove the ‘:sa=xxxxx’ parameter specifications. You may find this (slightly dated) video useful: https://software.intel.com/en-us/videos/intel-vtune-amplifier-xe-video-tuto… More shortly. -michael From: Will Boyd [mailto:[email protected]] Sent: Friday, January 06, 2017 9:36 AM To: D'mello, Michael <michael.dmello(a)intel.com>; Hammond, Jeff R <jeff.r.hammond(a)intel.com>; intel-nda(a)jlse.anl.gov Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi Michael, The output for that command was the following: ]$ amplxe-cl -collect-with runsa -knob event-config=CPU_CLK_UNHALTED.THREAD:sa=2300000,CPU_CLK_UNHALTED.REF_TSC:sa=2300000,INST_RETIRED.ANY:sa=2300000 openmc amplxe: Warning: To profile kernel modules during the session, make sure they are available in the /lib/modules/kernel_version/ location. amplxe: Collection started. To stop the collection, either press CTRL-C or enter from another console window: amplxe-cl -r /home/wboyd/ecp-benchmarks/pin-cell/r001runsa -command stop. ... amplxe: Collection stopped. amplxe: Using result path `/home/wboyd/ecp-benchmarks/pin-cell/r001runsa' amplxe: Executing actions 0 % amplxe: Warning: The result contains a lot of raw data. Finalization may take much time. Use the -finalization-mode=deferred option to finalize the result on a faster single-thread performance machine. amplxe: Executing actions 12 % Loading '91917.perf' file amplxe: Executing actions 19 % Resolving information for `libhdf5_fortran.so.10 amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/jbd2/jbd2.ko'. amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/nfs/nfs.ko'. amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/ext4/ext4.ko'. amplxe: Executing actions 19 % Resolving information for `libhdf5_hl.so.100.0.0 amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/drivers/ata/libahci.ko'. amplxe: Executing actions 19 % Resolving information for `libahci.ko' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/libc-2.17.so<http://libc-2.17.so>'. amplxe: Executing actions 19 % Resolving information for `libpthread-2.17.so<http://libpthread-2.17.so>' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/libpthread-2.17.so<http://libpthread-2.17.so>'. amplxe: Executing actions 20 % Resolving information for `ld-2.17.so<http://ld-2.17.so>' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/ld-2.17.so<http://ld-2.17.so>'. amplxe: Executing actions 20 % Resolving information for `libm-2.17.so<http://libm-2.17.so>' amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/net/sunrpc/sunrpc.ko'. amplxe: Executing actions 20 % Resolving information for `sunrpc.ko' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/libm-2.17.so<http://libm-2.17.so>'. amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/lockd/lockd.ko'. amplxe: Executing actions 20 % Resolving information for `libgomp.so.1.0.0' amplxe: Warning: %CantOpenFile amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/drivers/ata/libata.ko'. amplxe: Executing actions 20 % Resolving information for `libata.ko' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/libgomp.so.1.0.0'. amplxe: Executing actions 21 % Resolving information for `libgfortran.so.3.0.0' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/libgfortran.so.3.0.0'. amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/drivers/net/ethernet/intel/igb/igb.ko'. amplxe: Executing actions 21 % Resolving information for `libmpi.so.0.0.0' amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/nfs/nfsv3.ko'. amplxe: Executing actions 21 % Resolving information for `libgcc_s-4.8.5-201507 amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/libgcc_s-4.8.5-20150702.so.1'. amplxe: Executing actions 75 % Generating a report Collection and Platform Info ---------------------------- Parameter r001runsa ------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Application Command Line openmc Operating System 3.10.0-514.2.2.el7.x86_64 NAME="Red Hat Enterprise Linux Server" VERSION="7.3 (Maipo)" ID="rhel" ID_LIKE="fedora" VERSION_ID="7.3" PRETTY_NAME="Red Hat Enterprise Linux Server 7.3 (Maipo)" ANSI_COLOR="0;31" CPE_NAME="cpe:/o:redhat:enterprise_linux:7.3:GA:server" HOME_URL="https://www.redhat.com/" BUG_REPORT_URL="https://bugzilla.redhat.com/" REDHAT_BUGZILLA_PRODUCT="Red Hat Enterprise Linux 7" REDHAT_BUGZILLA_PRODUCT_VERSION=7.3 REDHAT_SUPPORT_PRODUCT="Red Hat Enterprise Linux" REDHAT_SUPPORT_PRODUCT_VERSION="7.3" Computer Name knl05.ftm.alcf.anl.gov<http://knl05.ftm.alcf.anl.gov> Result Size 1794777221 Collection start time 15:00:58 06/01/2017 UTC Collection stop time 15:03:03 06/01/2017 UTC CPU --- Parameter r001runsa ----------------- --------------------------------------------- Name Intel(R) Processor code named Knights Landing Frequency 1296995999 Logical CPU Count 256 Summary ------- Elapsed Time: 124.992 CPU Time: 6677.394 Average CPU Usage: 53.360 CPI Rate: 3.738 Event summary ------------- Hardware Event Type Hardware Event Count:Self Hardware Event Sample Count:Self Events Per Sample ------------------------ ------------------------- -------------------------------- ----------------- CPU_CLK_UNHALTED.THREAD 6661480800000 2896296 2300000 CPU_CLK_UNHALTED.REF_TSC 8660553400000 3765458 2300000 INST_RETIRED.ANY 1781975600000 774772 2300000 amplxe: Executing actions 100 % done On Fri, Jan 6, 2017 at 9:57 AM D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>> wrote: Will, This looks good. One more test: amplxe-cl -collect-with runsa -knob event-config=CPU_CLK_UNHALTED.THREAD:sa=2300000,CPU_CLK_UNHALTED.REF_TSC:sa=2300000,INST_RETIRED.ANY:sa=2300000 ./a.out If this works, we can do a similar thing with hpc-performance & memory access. I will send you those command lines. Still checking on a better solution. Regards -michael From: Will Boyd [mailto:[email protected]<mailto:[email protected]>] Sent: Friday, January 06, 2017 8:38 AM To: D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>>; Hammond, Jeff R <jeff.r.hammond(a)intel.com<mailto:[email protected]>>; intel-nda(a)jlse.anl.gov<mailto:[email protected]> Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi Michael, I am running on the machine named "KNL" - in particular, I most recently ran on node "knl05". I ran the command you suggested and the following is the output: $ amplxe-cl -collect-with runsa –analyze-system –duration 5 amplxe: Collection started. To stop the collection, either press CTRL-C or enter from another console window: amplxe-cl -r /home/wboyd/r000runsa -command stop. amplxe: Collection detached. amplxe: Collection stopped. amplxe: Using result path `/home/wboyd/r000runsa' amplxe: Executing actions 100 % done amplxe: Error: 0x40000025 (Inapplicable report) -- The report 'summary' is not applicable to the result /home/wboyd/r000runsa/r000runsa.amplxe. Let me know if you have any insights based on the concluding error message. Best, Will On Thu, Jan 5, 2017 at 8:28 PM D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>> wrote: Hi Will, For some reason, I am not able to log into my account on the JLSE login node. My progress on the problem has therefore been delayed. While I sort out my login problems, could you try: > amplxe-cl -collect-with runsa –analyze-system –duration 5 Send me the output of this command. Also which JLSE KNL are you using? Regards -michael From: Will Boyd [mailto:[email protected]<mailto:[email protected]>] Sent: Thursday, January 05, 2017 10:55 AM To: D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>>; Hammond, Jeff R <jeff.r.hammond(a)intel.com<mailto:[email protected]>>; intel-nda(a)jlse.anl.gov<mailto:[email protected]> Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi For some reason, "hpc-performance" is not provided as an "Analysis Type" in the GUI when the Intel Xeon Phi is selected as the "Analysis Target." Nevertheless, I selected "memory-access" as an "Analysis Type" and produced the following command line: amplxe-cl -target-system mic-native:mic0 -collect memory-access -knob analyze-openmp=true -app-working-dir /home/wboyd/ecp-benchmarks/pin-cell -- /home/wboyd/openmc/build/bin/openmc When launched from a KNL node on JLSE, this results in the following error: amplxe: Using target: mic-host-launch:mic0 amplxe: Error: Amplifier cannot detect Intel Xeon Phi coprocessor configuration. amplxe: Error: Amplifier cannot detect Intel Xeon Phi coprocessor configuration. Thanks in advance for any advice on how to sidestep this issue. On Thu, Jan 5, 2017 at 8:13 AM Will Boyd <wbinventor(a)gmail.com<mailto:[email protected]>> wrote: Thank you Michael. I don't have root privileges on JLSE, but I will try to extract the command line from the GUI as a workaround. Thanks for looking into this, I really appreciate the help. On Thu, Jan 5, 2017, 1:23 AM D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>> wrote: Will, From what I can tell, the system you are on seems to be configured to use the Linux “perf” collector by default. For “hpc-performance” to run with this collector, you will have to configure “perf” in system wide mode. The error you were seeing seems to be related to this. The following page provides some details: https://software.intel.com/en-us/perf_collection_from_lin (I have listed the relevant section below). Unfortunately, the information provided will not help directly (unless you have root privelages on jlse). One workaround is to configure the analysis in the gui & output the command line (click on the “Command Line” button). You will have to check the “Use –collect with action” box to get the command line you need. This approach should work, but as you will see the command line is complicated. You can certainly try this, but I believe there is a simpler workaround. More on this shortly. Regards -michael PS: The relevant section on the page is: NOTE • For uncore events collection, configure Perf to run in the system-wide mode by setting the /proc/sys/kernel/perf_event_paranoid value to 0 or less (root privileges are required). • For the kernel modules resolution<https://software.intel.com/node/84ddf2a4-d4a6-4027-92e3-dce7b0fd7044#GUID-8…>, make sure you have enough permissions to read kernel symbols information from the /proc/kallsyms file. Perf-based driverless collection can be used for running Advanced Hotspots, General Exploration and Custom event-based sampling analysis types on Linux and Android OS. If the uncore events support is available on the system, the VTune Amplifier may also use the Perf collection for Memory Access, HPC Performance Characterization and General Exploration analysis types with the Analyze memory bandwidth option enabled. From: Will Boyd [mailto:[email protected]<mailto:[email protected]>] Sent: Wednesday, January 04, 2017 8:36 PM To: D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>>; Hammond, Jeff R <jeff.r.hammond(a)intel.com<mailto:[email protected]>>; intel-nda(a)jlse.anl.gov<mailto:[email protected]> Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi Michael, Yes, that command works, along with "concurrency" and "locksandwaits". Only the "hpc-performance" and "memory-access" fail on KNL. Will On Wed, Jan 4, 2017, 8:09 PM D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>> wrote: Hi Will, Does this command work? > amplxe-cl –collect advanced-hotspots openmc Regards -michael From: Will Boyd [mailto:[email protected]<mailto:[email protected]>] Sent: Wednesday, January 04, 2017 4:25 PM To: Hammond, Jeff R <jeff.r.hammond(a)intel.com<mailto:[email protected]>>; D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>>; intel-nda(a)jlse.anl.gov<mailto:[email protected]> Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi I am trying to run VTune on KNL but am running into the following error: $ amplxe-cl -collect hpc-performance openmc amplxe: Error: both cgroup and no-aggregation modes only available in system-wide mode usage: perf stat [<options>] [<command>] -G, --cgroup <name> monitor event in cgroup name only -A, --no-aggr disable CPU count aggregation -a, --all-cpus system-wide collection from all CPUs This command works fine on a Haswell node, but breaks when I run it on KNL. I am able to run VTune with the "hotspots" collection argument without on KNL. Does anyone know how to resolve this issue? Thanks, Will On Tue, Dec 13, 2016 at 6:22 PM Hammond, Jeff R <jeff.r.hammond(a)intel.com<mailto:[email protected]>> wrote: FWIW based upon my experience trying unsuccessfully to debug why NWChem won’t run in the Vtune GUI, I recommend always using Vtune CLI. It’s a bad habit to get used to fancy features like GUIs and dynamic memory allocation if you want to be a serious HPC person ;-) Jeff From: <intel-nda-bounces(a)lists.jlse.anl.gov<mailto:[email protected]>> on behalf of Will Boyd <wbinventor(a)gmail.com<mailto:[email protected]>> Date: Tuesday, December 13, 2016 at 3:00 PM To: "D'mello, Michael" <michael.dmello(a)intel.com<mailto:[email protected]>>, "intel-nda(a)jlse.anl.gov<mailto:[email protected]>" <intel-nda(a)jlse.anl.gov<mailto:[email protected]>> Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi Thank you Michael and Jeff. Downloading the results from the VTune CLI and importing them into the VTune GUI locally works great. On Tue, Dec 13, 2016 at 5:35 PM D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>> wrote: Hi Will, You can use the command line interface to collect the profiling information. For example: > amplxe_cl –collect hotspots ./a.out You can then move the results (entire directory) over to the environment (Windows or Linux) in which you would like to view the results. regards -michael From: intel-nda-bounces(a)lists.jlse.anl.gov<mailto:[email protected]> [mailto:[email protected]<mailto:[email protected]>] On Behalf Of Will Boyd Sent: Tuesday, December 13, 2016 4:30 PM To: intel-nda(a)jlse.anl.gov<mailto:[email protected]> Subject: [JLSE-Intel-NDA] Using VTune remotely on the Phi I am interested in profiling an application on the Phi using Intel VTune. I would like to use the graphical interface for VTune, but have been unable to launch VTune remotely using my local instance of VTune. Does anyone have any recommendations for how to remotely profile my application on the Phi but view the results locally with the VTune GUI on my workstation? Thanks, Will

1 0

Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi
by Will Boyd 06 Jan '17

06 Jan '17

Michael, The output for that command was the following: ]$ amplxe-cl -collect-with runsa -knob event-config=CPU_CLK_UNHALTED.THREAD:sa=2300000,CPU_CLK_UNHALTED.REF_TSC:sa=2300000,INST_RETIRED.ANY:sa=2300000 openmc amplxe: Warning: To profile kernel modules during the session, make sure they are available in the /lib/modules/kernel_version/ location. amplxe: Collection started. To stop the collection, either press CTRL-C or enter from another console window: amplxe-cl -r /home/wboyd/ecp-benchmarks/pin-cell/r001runsa -command stop. ... amplxe: Collection stopped. amplxe: Using result path `/home/wboyd/ecp-benchmarks/pin-cell/r001runsa' amplxe: Executing actions 0 % amplxe: Warning: The result contains a lot of raw data. Finalization may take much time. Use the -finalization-mode=deferred option to finalize the result on a faster single-thread performance machine. amplxe: Executing actions 12 % Loading '91917.perf' file amplxe: Executing actions 19 % Resolving information for `libhdf5_fortran.so.10 amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/jbd2/jbd2.ko'. amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/nfs/nfs.ko'. amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/ext4/ext4.ko'. amplxe: Executing actions 19 % Resolving information for `libhdf5_hl.so.100.0.0 amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/drivers/ata/libahci.ko'. amplxe: Executing actions 19 % Resolving information for `libahci.ko' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/ libc-2.17.so'. amplxe: Executing actions 19 % Resolving information for `libpthread-2.17.so' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/ libpthread-2.17.so'. amplxe: Executing actions 20 % Resolving information for `ld-2.17.so' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/ ld-2.17.so'. amplxe: Executing actions 20 % Resolving information for `libm-2.17.so' amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/net/sunrpc/sunrpc.ko'. amplxe: Executing actions 20 % Resolving information for `sunrpc.ko' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/ libm-2.17.so'. amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/lockd/lockd.ko'. amplxe: Executing actions 20 % Resolving information for `libgomp.so.1.0.0' amplxe: Warning: %CantOpenFile amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/drivers/ata/libata.ko'. amplxe: Executing actions 20 % Resolving information for `libata.ko' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/libgomp.so.1.0.0'. amplxe: Executing actions 21 % Resolving information for `libgfortran.so.3.0.0' amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/libgfortran.so.3.0.0'. amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/drivers/net/ethernet/intel/igb/igb.ko'. amplxe: Executing actions 21 % Resolving information for `libmpi.so.0.0.0' amplxe: Warning: Cannot locate file `/lib/modules/3.10.0-514.2.2.el7.x86_64/kernel/fs/nfs/nfsv3.ko'. amplxe: Executing actions 21 % Resolving information for `libgcc_s-4.8.5-201507 amplxe: Warning: Cannot locate debugging symbols for file `/usr/lib64/libgcc_s-4.8.5-20150702.so.1'. amplxe: Executing actions 75 % Generating a report Collection and Platform Info ---------------------------- Parameter r001runsa ------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Application Command Line openmc Operating System 3.10.0-514.2.2.el7.x86_64 NAME="Red Hat Enterprise Linux Server" VERSION="7.3 (Maipo)" ID="rhel" ID_LIKE="fedora" VERSION_ID="7.3" PRETTY_NAME="Red Hat Enterprise Linux Server 7.3 (Maipo)" ANSI_COLOR="0;31" CPE_NAME="cpe:/o:redhat:enterprise_linux:7.3:GA:server" HOME_URL="https://www.redhat.com/" BUG_REPORT_URL="https://bugzilla.redhat.com/" REDHAT_BUGZILLA_PRODUCT="Red Hat Enterprise Linux 7" REDHAT_BUGZILLA_PRODUCT_VERSION=7.3 REDHAT_SUPPORT_PRODUCT="Red Hat Enterprise Linux" REDHAT_SUPPORT_PRODUCT_VERSION="7.3" Computer Name knl05.ftm.alcf.anl.gov Result Size 1794777221 Collection start time 15:00:58 06/01/2017 UTC Collection stop time 15:03:03 06/01/2017 UTC CPU --- Parameter r001runsa ----------------- --------------------------------------------- Name Intel(R) Processor code named Knights Landing Frequency 1296995999 Logical CPU Count 256 Summary ------- Elapsed Time: 124.992 CPU Time: 6677.394 Average CPU Usage: 53.360 CPI Rate: 3.738 Event summary ------------- Hardware Event Type Hardware Event Count:Self Hardware Event Sample Count:Self Events Per Sample ------------------------ ------------------------- -------------------------------- ----------------- CPU_CLK_UNHALTED.THREAD 6661480800000 2896296 2300000 CPU_CLK_UNHALTED.REF_TSC 8660553400000 3765458 2300000 INST_RETIRED.ANY 1781975600000 774772 2300000 amplxe: Executing actions 100 % done On Fri, Jan 6, 2017 at 9:57 AM D'mello, Michael <michael.dmello(a)intel.com> wrote: > Will, > > > > This looks good. One more test: > > > > amplxe-cl -collect-with runsa -knob > event-config=CPU_CLK_UNHALTED.THREAD:sa=2300000,CPU_CLK_UNHALTED.REF_TSC:sa=2300000,INST_RETIRED.ANY:sa=2300000 > ./a.out > > > > If this works, we can do a similar thing with hpc-performance & memory > access. I will send you those command lines. > > > > Still checking on a better solution. > > > > Regards > > > > -michael > > > > > > *From:* Will Boyd [mailto:[email protected]] > *Sent:* Friday, January 06, 2017 8:38 AM > > > *To:* D'mello, Michael <michael.dmello(a)intel.com>; Hammond, Jeff R < > jeff.r.hammond(a)intel.com>; intel-nda(a)jlse.anl.gov > *Subject:* Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi > > > > Michael, > > > > I am running on the machine named "KNL" - in particular, I most recently > ran on node "knl05". > > > > I ran the command you suggested and the following is the output: > > > > $ amplxe-cl -collect-with runsa –analyze-system –duration 5 > > amplxe: Collection started. To stop the collection, either press CTRL-C or > enter from another console window: amplxe-cl -r /home/wboyd/r000runsa > -command stop. > > amplxe: Collection detached. > > amplxe: Collection stopped. > > amplxe: Using result path `/home/wboyd/r000runsa' > > amplxe: Executing actions 100 % done > > > amplxe: Error: 0x40000025 (Inapplicable report) -- The report 'summary' is > not applicable to the result /home/wboyd/r000runsa/r000runsa.amplxe. > > > > Let me know if you have any insights based on the concluding error message. > > > > Best, > > Will > > > > On Thu, Jan 5, 2017 at 8:28 PM D'mello, Michael <michael.dmello(a)intel.com> > wrote: > > Hi Will, > > > > For some reason, I am not able to log into my account on the JLSE login > node. My progress on the problem has therefore been delayed. > > > > While I sort out my login problems, could you try: > > > > Ø amplxe-cl -collect-with runsa –analyze-system –duration 5 > > > > Send me the output of this command. > > > > Also which JLSE KNL are you using? > > > > Regards > > > > -michael > > > > *From:* Will Boyd [mailto:[email protected]] > *Sent:* Thursday, January 05, 2017 10:55 AM > > > *To:* D'mello, Michael <michael.dmello(a)intel.com>; Hammond, Jeff R < > jeff.r.hammond(a)intel.com>; intel-nda(a)jlse.anl.gov > *Subject:* Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi > > > > For some reason, "hpc-performance" is not provided as an "Analysis Type" > in the GUI when the Intel Xeon Phi is selected as the "Analysis Target." > Nevertheless, I selected "memory-access" as an "Analysis Type" and produced > the following command line: > > > > amplxe-cl -target-system mic-native:mic0 -collect memory-access -knob > analyze-openmp=true -app-working-dir /home/wboyd/ecp-benchmarks/pin-cell -- > /home/wboyd/openmc/build/bin/openmc > > > > When launched from a KNL node on JLSE, this results in the following error: > > > > amplxe: Using target: mic-host-launch:mic0 > > amplxe: Error: Amplifier cannot detect Intel Xeon Phi coprocessor > configuration. > > amplxe: Error: Amplifier cannot detect Intel Xeon Phi coprocessor > configuration. > > > > Thanks in advance for any advice on how to sidestep this issue. > > > > On Thu, Jan 5, 2017 at 8:13 AM Will Boyd <wbinventor(a)gmail.com> wrote: > > Thank you Michael. I don't have root privileges on JLSE, but I will try to > extract the command line from the GUI as a workaround. Thanks for looking > into this, I really appreciate the help. > > > > On Thu, Jan 5, 2017, 1:23 AM D'mello, Michael <michael.dmello(a)intel.com> > wrote: > > Will, > > > > From what I can tell, the system you are on seems to be configured to use > the Linux “perf” collector by default. For “hpc-performance” to run with > this collector, you will have to configure “perf” in system wide mode. The > error you were seeing seems to be related to this. > > > > The following page provides some details: > https://software.intel.com/en-us/perf_collection_from_lin (I have listed > the relevant section below). > > > > Unfortunately, the information provided will not help directly (unless you > have root privelages on jlse). > > > > One workaround is to configure the analysis in the gui & output the > command line (click on the “Command Line” button). You will have to check > the “Use –collect with action” box to get the command line you need. This > approach should work, but as you will see the command line is complicated. > You can certainly try this, but I believe there is a simpler workaround. > More on this shortly. > > > > Regards > > > > -michael > > > > PS: The relevant section on the page is: > > > > *NOTE* > > · For uncore events collection, configure Perf to run in the > system-wide mode by setting the /proc/sys/kernel/perf_event_paranoid value > to 0 or less (root privileges are required). > > · For the kernel modules resolution > <https://software.intel.com/node/84ddf2a4-d4a6-4027-92e3-dce7b0fd7044#GUID-8…>, > make sure you have enough permissions to read kernel symbols information > from the /proc/kallsyms file. > > Perf-based driverless collection can be used for running Advanced > Hotspots, General Exploration and Custom event-based sampling analysis > types on Linux and Android OS. If the uncore events support is available on > the system, the VTune Amplifier may also use the Perf collection for Memory > Access, HPC Performance Characterization and General Exploration analysis > types with the *Analyze memory bandwidth* option enabled. > > > > *From:* Will Boyd [mailto:[email protected]] > *Sent:* Wednesday, January 04, 2017 8:36 PM > *To:* D'mello, Michael <michael.dmello(a)intel.com>; Hammond, Jeff R < > jeff.r.hammond(a)intel.com>; intel-nda(a)jlse.anl.gov > > > *Subject:* Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi > > > > Michael, > > Yes, that command works, along with "concurrency" and "locksandwaits". > Only the "hpc-performance" and "memory-access" fail on KNL. > > Will > > > > On Wed, Jan 4, 2017, 8:09 PM D'mello, Michael <michael.dmello(a)intel.com> > wrote: > > Hi Will, > > > > Does this command work? > > > > > amplxe-cl –collect advanced-hotspots openmc > > > > Regards > > > > -michael > > > > > > > > > > *From:* Will Boyd [mailto:[email protected]] > *Sent:* Wednesday, January 04, 2017 4:25 PM > *To:* Hammond, Jeff R <jeff.r.hammond(a)intel.com>; D'mello, Michael < > michael.dmello(a)intel.com>; intel-nda(a)jlse.anl.gov > > > *Subject:* Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi > > > > I am trying to run VTune on KNL but am running into the following error: > > > > $ amplxe-cl -collect hpc-performance openmc > > amplxe: Error: both cgroup and no-aggregation modes only available in > system-wide mode > > > > usage: perf stat [<options>] [<command>] > > > > -G, --cgroup <name> monitor event in cgroup name only > > -A, --no-aggr disable CPU count aggregation > > -a, --all-cpus system-wide collection from all CPUs > > > > This command works fine on a Haswell node, but breaks when I run it on > KNL. I am able to run VTune with the "hotspots" collection argument without > on KNL. Does anyone know how to resolve this issue? > > > > Thanks, > > Will > > > > On Tue, Dec 13, 2016 at 6:22 PM Hammond, Jeff R <jeff.r.hammond(a)intel.com> > wrote: > > FWIW based upon my experience trying unsuccessfully to debug why NWChem > won’t run in the Vtune GUI, I recommend always using Vtune CLI. It’s a bad > habit to get used to fancy features like GUIs and dynamic memory allocation > if you want to be a serious HPC person ;-) > > > > Jeff > > > > *From: *<intel-nda-bounces(a)lists.jlse.anl.gov> on behalf of Will Boyd < > wbinventor(a)gmail.com> > > *Date: *Tuesday, December 13, 2016 at 3:00 PM > *To: *"D'mello, Michael" <michael.dmello(a)intel.com>, " > intel-nda(a)jlse.anl.gov" <intel-nda(a)jlse.anl.gov> > *Subject: *Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi > > > > Thank you Michael and Jeff. Downloading the results from the VTune CLI and > importing them into the VTune GUI locally works great. > > > > On Tue, Dec 13, 2016 at 5:35 PM D'mello, Michael <michael.dmello(a)intel.com> > wrote: > > Hi Will, > > > > You can use the command line interface to collect the profiling > information. For example: > > > > Ø amplxe_cl –collect hotspots ./a.out > > > > You can then move the results (entire directory) over to the environment > (Windows or Linux) in which you would like to view the results. > > > > regards > > > > -michael > > > > > > *From:* intel-nda-bounces(a)lists.jlse.anl.gov [mailto: > intel-nda-bounces(a)lists.jlse.anl.gov] *On Behalf Of *Will Boyd > *Sent:* Tuesday, December 13, 2016 4:30 PM > *To:* intel-nda(a)jlse.anl.gov > > > *Subject:* [JLSE-Intel-NDA] Using VTune remotely on the Phi > > > > I am interested in profiling an application on the Phi using Intel VTune. > I would like to use the graphical interface for VTune, but have been unable > to launch VTune remotely using my local instance of VTune. Does anyone have > any recommendations for how to remotely profile my application on the Phi > but view the results locally with the VTune GUI on my workstation? > > > > Thanks, > > Will > >

1 0

Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi
by D'mello, Michael 06 Jan '17

06 Jan '17

Will, This looks good. One more test: amplxe-cl -collect-with runsa -knob event-config=CPU_CLK_UNHALTED.THREAD:sa=2300000,CPU_CLK_UNHALTED.REF_TSC:sa=2300000,INST_RETIRED.ANY:sa=2300000 ./a.out If this works, we can do a similar thing with hpc-performance & memory access. I will send you those command lines. Still checking on a better solution. Regards -michael From: Will Boyd [mailto:[email protected]] Sent: Friday, January 06, 2017 8:38 AM To: D'mello, Michael <michael.dmello(a)intel.com>; Hammond, Jeff R <jeff.r.hammond(a)intel.com>; intel-nda(a)jlse.anl.gov Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi Michael, I am running on the machine named "KNL" - in particular, I most recently ran on node "knl05". I ran the command you suggested and the following is the output: $ amplxe-cl -collect-with runsa –analyze-system –duration 5 amplxe: Collection started. To stop the collection, either press CTRL-C or enter from another console window: amplxe-cl -r /home/wboyd/r000runsa -command stop. amplxe: Collection detached. amplxe: Collection stopped. amplxe: Using result path `/home/wboyd/r000runsa' amplxe: Executing actions 100 % done amplxe: Error: 0x40000025 (Inapplicable report) -- The report 'summary' is not applicable to the result /home/wboyd/r000runsa/r000runsa.amplxe. Let me know if you have any insights based on the concluding error message. Best, Will On Thu, Jan 5, 2017 at 8:28 PM D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>> wrote: Hi Will, For some reason, I am not able to log into my account on the JLSE login node. My progress on the problem has therefore been delayed. While I sort out my login problems, could you try: > amplxe-cl -collect-with runsa –analyze-system –duration 5 Send me the output of this command. Also which JLSE KNL are you using? Regards -michael From: Will Boyd [mailto:[email protected]<mailto:[email protected]>] Sent: Thursday, January 05, 2017 10:55 AM To: D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>>; Hammond, Jeff R <jeff.r.hammond(a)intel.com<mailto:[email protected]>>; intel-nda(a)jlse.anl.gov<mailto:[email protected]> Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi For some reason, "hpc-performance" is not provided as an "Analysis Type" in the GUI when the Intel Xeon Phi is selected as the "Analysis Target." Nevertheless, I selected "memory-access" as an "Analysis Type" and produced the following command line: amplxe-cl -target-system mic-native:mic0 -collect memory-access -knob analyze-openmp=true -app-working-dir /home/wboyd/ecp-benchmarks/pin-cell -- /home/wboyd/openmc/build/bin/openmc When launched from a KNL node on JLSE, this results in the following error: amplxe: Using target: mic-host-launch:mic0 amplxe: Error: Amplifier cannot detect Intel Xeon Phi coprocessor configuration. amplxe: Error: Amplifier cannot detect Intel Xeon Phi coprocessor configuration. Thanks in advance for any advice on how to sidestep this issue. On Thu, Jan 5, 2017 at 8:13 AM Will Boyd <wbinventor(a)gmail.com<mailto:[email protected]>> wrote: Thank you Michael. I don't have root privileges on JLSE, but I will try to extract the command line from the GUI as a workaround. Thanks for looking into this, I really appreciate the help. On Thu, Jan 5, 2017, 1:23 AM D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>> wrote: Will, From what I can tell, the system you are on seems to be configured to use the Linux “perf” collector by default. For “hpc-performance” to run with this collector, you will have to configure “perf” in system wide mode. The error you were seeing seems to be related to this. The following page provides some details: https://software.intel.com/en-us/perf_collection_from_lin (I have listed the relevant section below). Unfortunately, the information provided will not help directly (unless you have root privelages on jlse). One workaround is to configure the analysis in the gui & output the command line (click on the “Command Line” button). You will have to check the “Use –collect with action” box to get the command line you need. This approach should work, but as you will see the command line is complicated. You can certainly try this, but I believe there is a simpler workaround. More on this shortly. Regards -michael PS: The relevant section on the page is: NOTE • For uncore events collection, configure Perf to run in the system-wide mode by setting the /proc/sys/kernel/perf_event_paranoid value to 0 or less (root privileges are required). • For the kernel modules resolution<https://software.intel.com/node/84ddf2a4-d4a6-4027-92e3-dce7b0fd7044#GUID-8…>, make sure you have enough permissions to read kernel symbols information from the /proc/kallsyms file. Perf-based driverless collection can be used for running Advanced Hotspots, General Exploration and Custom event-based sampling analysis types on Linux and Android OS. If the uncore events support is available on the system, the VTune Amplifier may also use the Perf collection for Memory Access, HPC Performance Characterization and General Exploration analysis types with the Analyze memory bandwidth option enabled. From: Will Boyd [mailto:[email protected]<mailto:[email protected]>] Sent: Wednesday, January 04, 2017 8:36 PM To: D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>>; Hammond, Jeff R <jeff.r.hammond(a)intel.com<mailto:[email protected]>>; intel-nda(a)jlse.anl.gov<mailto:[email protected]> Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi Michael, Yes, that command works, along with "concurrency" and "locksandwaits". Only the "hpc-performance" and "memory-access" fail on KNL. Will On Wed, Jan 4, 2017, 8:09 PM D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>> wrote: Hi Will, Does this command work? > amplxe-cl –collect advanced-hotspots openmc Regards -michael From: Will Boyd [mailto:[email protected]<mailto:[email protected]>] Sent: Wednesday, January 04, 2017 4:25 PM To: Hammond, Jeff R <jeff.r.hammond(a)intel.com<mailto:[email protected]>>; D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>>; intel-nda(a)jlse.anl.gov<mailto:[email protected]> Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi I am trying to run VTune on KNL but am running into the following error: $ amplxe-cl -collect hpc-performance openmc amplxe: Error: both cgroup and no-aggregation modes only available in system-wide mode usage: perf stat [<options>] [<command>] -G, --cgroup <name> monitor event in cgroup name only -A, --no-aggr disable CPU count aggregation -a, --all-cpus system-wide collection from all CPUs This command works fine on a Haswell node, but breaks when I run it on KNL. I am able to run VTune with the "hotspots" collection argument without on KNL. Does anyone know how to resolve this issue? Thanks, Will On Tue, Dec 13, 2016 at 6:22 PM Hammond, Jeff R <jeff.r.hammond(a)intel.com<mailto:[email protected]>> wrote: FWIW based upon my experience trying unsuccessfully to debug why NWChem won’t run in the Vtune GUI, I recommend always using Vtune CLI. It’s a bad habit to get used to fancy features like GUIs and dynamic memory allocation if you want to be a serious HPC person ;-) Jeff From: <intel-nda-bounces(a)lists.jlse.anl.gov<mailto:[email protected]>> on behalf of Will Boyd <wbinventor(a)gmail.com<mailto:[email protected]>> Date: Tuesday, December 13, 2016 at 3:00 PM To: "D'mello, Michael" <michael.dmello(a)intel.com<mailto:[email protected]>>, "intel-nda(a)jlse.anl.gov<mailto:[email protected]>" <intel-nda(a)jlse.anl.gov<mailto:[email protected]>> Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi Thank you Michael and Jeff. Downloading the results from the VTune CLI and importing them into the VTune GUI locally works great. On Tue, Dec 13, 2016 at 5:35 PM D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>> wrote: Hi Will, You can use the command line interface to collect the profiling information. For example: > amplxe_cl –collect hotspots ./a.out You can then move the results (entire directory) over to the environment (Windows or Linux) in which you would like to view the results. regards -michael From: intel-nda-bounces(a)lists.jlse.anl.gov<mailto:[email protected]> [mailto:[email protected]<mailto:[email protected]>] On Behalf Of Will Boyd Sent: Tuesday, December 13, 2016 4:30 PM To: intel-nda(a)jlse.anl.gov<mailto:[email protected]> Subject: [JLSE-Intel-NDA] Using VTune remotely on the Phi I am interested in profiling an application on the Phi using Intel VTune. I would like to use the graphical interface for VTune, but have been unable to launch VTune remotely using my local instance of VTune. Does anyone have any recommendations for how to remotely profile my application on the Phi but view the results locally with the VTune GUI on my workstation? Thanks, Will

1 0

Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi
by Will Boyd 06 Jan '17

06 Jan '17

Michael, I am running on the machine named "KNL" - in particular, I most recently ran on node "knl05". I ran the command you suggested and the following is the output: $ amplxe-cl -collect-with runsa –analyze-system –duration 5 amplxe: Collection started. To stop the collection, either press CTRL-C or enter from another console window: amplxe-cl -r /home/wboyd/r000runsa -command stop. amplxe: Collection detached. amplxe: Collection stopped. amplxe: Using result path `/home/wboyd/r000runsa' amplxe: Executing actions 100 % done amplxe: Error: 0x40000025 (Inapplicable report) -- The report 'summary' is not applicable to the result /home/wboyd/r000runsa/r000runsa.amplxe. Let me know if you have any insights based on the concluding error message. Best, Will On Thu, Jan 5, 2017 at 8:28 PM D'mello, Michael <michael.dmello(a)intel.com> wrote: > Hi Will, > > > > For some reason, I am not able to log into my account on the JLSE login > node. My progress on the problem has therefore been delayed. > > > > While I sort out my login problems, could you try: > > > > Ø amplxe-cl -collect-with runsa –analyze-system –duration 5 > > > > Send me the output of this command. > > > > Also which JLSE KNL are you using? > > > > Regards > > > > -michael > > > > *From:* Will Boyd [mailto:[email protected]] > *Sent:* Thursday, January 05, 2017 10:55 AM > > > *To:* D'mello, Michael <michael.dmello(a)intel.com>; Hammond, Jeff R < > jeff.r.hammond(a)intel.com>; intel-nda(a)jlse.anl.gov > *Subject:* Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi > > > > For some reason, "hpc-performance" is not provided as an "Analysis Type" > in the GUI when the Intel Xeon Phi is selected as the "Analysis Target." > Nevertheless, I selected "memory-access" as an "Analysis Type" and produced > the following command line: > > > > amplxe-cl -target-system mic-native:mic0 -collect memory-access -knob > analyze-openmp=true -app-working-dir /home/wboyd/ecp-benchmarks/pin-cell -- > /home/wboyd/openmc/build/bin/openmc > > > > When launched from a KNL node on JLSE, this results in the following error: > > > > amplxe: Using target: mic-host-launch:mic0 > > amplxe: Error: Amplifier cannot detect Intel Xeon Phi coprocessor > configuration. > > amplxe: Error: Amplifier cannot detect Intel Xeon Phi coprocessor > configuration. > > > > Thanks in advance for any advice on how to sidestep this issue. > > > > On Thu, Jan 5, 2017 at 8:13 AM Will Boyd <wbinventor(a)gmail.com> wrote: > > Thank you Michael. I don't have root privileges on JLSE, but I will try to > extract the command line from the GUI as a workaround. Thanks for looking > into this, I really appreciate the help. > > > > On Thu, Jan 5, 2017, 1:23 AM D'mello, Michael <michael.dmello(a)intel.com> > wrote: > > Will, > > > > From what I can tell, the system you are on seems to be configured to use > the Linux “perf” collector by default. For “hpc-performance” to run with > this collector, you will have to configure “perf” in system wide mode. The > error you were seeing seems to be related to this. > > > > The following page provides some details: > https://software.intel.com/en-us/perf_collection_from_lin (I have listed > the relevant section below). > > > > Unfortunately, the information provided will not help directly (unless you > have root privelages on jlse). > > > > One workaround is to configure the analysis in the gui & output the > command line (click on the “Command Line” button). You will have to check > the “Use –collect with action” box to get the command line you need. This > approach should work, but as you will see the command line is complicated. > You can certainly try this, but I believe there is a simpler workaround. > More on this shortly. > > > > Regards > > > > -michael > > > > PS: The relevant section on the page is: > > > > *NOTE* > > · For uncore events collection, configure Perf to run in the > system-wide mode by setting the /proc/sys/kernel/perf_event_paranoid value > to 0 or less (root privileges are required). > > · For the kernel modules resolution > <https://software.intel.com/node/84ddf2a4-d4a6-4027-92e3-dce7b0fd7044#GUID-8…>, > make sure you have enough permissions to read kernel symbols information > from the /proc/kallsyms file. > > Perf-based driverless collection can be used for running Advanced > Hotspots, General Exploration and Custom event-based sampling analysis > types on Linux and Android OS. If the uncore events support is available on > the system, the VTune Amplifier may also use the Perf collection for Memory > Access, HPC Performance Characterization and General Exploration analysis > types with the *Analyze memory bandwidth* option enabled. > > > > *From:* Will Boyd [mailto:[email protected]] > *Sent:* Wednesday, January 04, 2017 8:36 PM > *To:* D'mello, Michael <michael.dmello(a)intel.com>; Hammond, Jeff R < > jeff.r.hammond(a)intel.com>; intel-nda(a)jlse.anl.gov > > > *Subject:* Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi > > > > Michael, > > Yes, that command works, along with "concurrency" and "locksandwaits". > Only the "hpc-performance" and "memory-access" fail on KNL. > > Will > > > > On Wed, Jan 4, 2017, 8:09 PM D'mello, Michael <michael.dmello(a)intel.com> > wrote: > > Hi Will, > > > > Does this command work? > > > > > amplxe-cl –collect advanced-hotspots openmc > > > > Regards > > > > -michael > > > > > > > > > > *From:* Will Boyd [mailto:[email protected]] > *Sent:* Wednesday, January 04, 2017 4:25 PM > *To:* Hammond, Jeff R <jeff.r.hammond(a)intel.com>; D'mello, Michael < > michael.dmello(a)intel.com>; intel-nda(a)jlse.anl.gov > > > *Subject:* Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi > > > > I am trying to run VTune on KNL but am running into the following error: > > > > $ amplxe-cl -collect hpc-performance openmc > > amplxe: Error: both cgroup and no-aggregation modes only available in > system-wide mode > > > > usage: perf stat [<options>] [<command>] > > > > -G, --cgroup <name> monitor event in cgroup name only > > -A, --no-aggr disable CPU count aggregation > > -a, --all-cpus system-wide collection from all CPUs > > > > This command works fine on a Haswell node, but breaks when I run it on > KNL. I am able to run VTune with the "hotspots" collection argument without > on KNL. Does anyone know how to resolve this issue? > > > > Thanks, > > Will > > > > On Tue, Dec 13, 2016 at 6:22 PM Hammond, Jeff R <jeff.r.hammond(a)intel.com> > wrote: > > FWIW based upon my experience trying unsuccessfully to debug why NWChem > won’t run in the Vtune GUI, I recommend always using Vtune CLI. It’s a bad > habit to get used to fancy features like GUIs and dynamic memory allocation > if you want to be a serious HPC person ;-) > > > > Jeff > > > > *From: *<intel-nda-bounces(a)lists.jlse.anl.gov> on behalf of Will Boyd < > wbinventor(a)gmail.com> > > *Date: *Tuesday, December 13, 2016 at 3:00 PM > *To: *"D'mello, Michael" <michael.dmello(a)intel.com>, " > intel-nda(a)jlse.anl.gov" <intel-nda(a)jlse.anl.gov> > *Subject: *Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi > > > > Thank you Michael and Jeff. Downloading the results from the VTune CLI and > importing them into the VTune GUI locally works great. > > > > On Tue, Dec 13, 2016 at 5:35 PM D'mello, Michael <michael.dmello(a)intel.com> > wrote: > > Hi Will, > > > > You can use the command line interface to collect the profiling > information. For example: > > > > Ø amplxe_cl –collect hotspots ./a.out > > > > You can then move the results (entire directory) over to the environment > (Windows or Linux) in which you would like to view the results. > > > > regards > > > > -michael > > > > > > *From:* intel-nda-bounces(a)lists.jlse.anl.gov [mailto: > intel-nda-bounces(a)lists.jlse.anl.gov] *On Behalf Of *Will Boyd > *Sent:* Tuesday, December 13, 2016 4:30 PM > *To:* intel-nda(a)jlse.anl.gov > > > *Subject:* [JLSE-Intel-NDA] Using VTune remotely on the Phi > > > > I am interested in profiling an application on the Phi using Intel VTune. > I would like to use the graphical interface for VTune, but have been unable > to launch VTune remotely using my local instance of VTune. Does anyone have > any recommendations for how to remotely profile my application on the Phi > but view the results locally with the VTune GUI on my workstation? > > > > Thanks, > > Will > >

1 0

Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi
by D'mello, Michael 05 Jan '17

05 Jan '17

Hi Will, For some reason, I am not able to log into my account on the JLSE login node. My progress on the problem has therefore been delayed. While I sort out my login problems, could you try: Ø amplxe-cl -collect-with runsa –analyze-system –duration 5 Send me the output of this command. Also which JLSE KNL are you using? Regards -michael From: Will Boyd [mailto:[email protected]] Sent: Thursday, January 05, 2017 10:55 AM To: D'mello, Michael <michael.dmello(a)intel.com>; Hammond, Jeff R <jeff.r.hammond(a)intel.com>; intel-nda(a)jlse.anl.gov Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi For some reason, "hpc-performance" is not provided as an "Analysis Type" in the GUI when the Intel Xeon Phi is selected as the "Analysis Target." Nevertheless, I selected "memory-access" as an "Analysis Type" and produced the following command line: amplxe-cl -target-system mic-native:mic0 -collect memory-access -knob analyze-openmp=true -app-working-dir /home/wboyd/ecp-benchmarks/pin-cell -- /home/wboyd/openmc/build/bin/openmc When launched from a KNL node on JLSE, this results in the following error: amplxe: Using target: mic-host-launch:mic0 amplxe: Error: Amplifier cannot detect Intel Xeon Phi coprocessor configuration. amplxe: Error: Amplifier cannot detect Intel Xeon Phi coprocessor configuration. Thanks in advance for any advice on how to sidestep this issue. On Thu, Jan 5, 2017 at 8:13 AM Will Boyd <wbinventor(a)gmail.com<mailto:[email protected]>> wrote: Thank you Michael. I don't have root privileges on JLSE, but I will try to extract the command line from the GUI as a workaround. Thanks for looking into this, I really appreciate the help. On Thu, Jan 5, 2017, 1:23 AM D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>> wrote: Will, From what I can tell, the system you are on seems to be configured to use the Linux “perf” collector by default. For “hpc-performance” to run with this collector, you will have to configure “perf” in system wide mode. The error you were seeing seems to be related to this. The following page provides some details: https://software.intel.com/en-us/perf_collection_from_lin (I have listed the relevant section below). Unfortunately, the information provided will not help directly (unless you have root privelages on jlse). One workaround is to configure the analysis in the gui & output the command line (click on the “Command Line” button). You will have to check the “Use –collect with action” box to get the command line you need. This approach should work, but as you will see the command line is complicated. You can certainly try this, but I believe there is a simpler workaround. More on this shortly. Regards -michael PS: The relevant section on the page is: NOTE • For uncore events collection, configure Perf to run in the system-wide mode by setting the /proc/sys/kernel/perf_event_paranoid value to 0 or less (root privileges are required). • For the kernel modules resolution<https://software.intel.com/node/84ddf2a4-d4a6-4027-92e3-dce7b0fd7044#GUID-8…>, make sure you have enough permissions to read kernel symbols information from the /proc/kallsyms file. Perf-based driverless collection can be used for running Advanced Hotspots, General Exploration and Custom event-based sampling analysis types on Linux and Android OS. If the uncore events support is available on the system, the VTune Amplifier may also use the Perf collection for Memory Access, HPC Performance Characterization and General Exploration analysis types with the Analyze memory bandwidth option enabled. From: Will Boyd [mailto:[email protected]<mailto:[email protected]>] Sent: Wednesday, January 04, 2017 8:36 PM To: D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>>; Hammond, Jeff R <jeff.r.hammond(a)intel.com<mailto:[email protected]>>; intel-nda(a)jlse.anl.gov<mailto:[email protected]> Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi Michael, Yes, that command works, along with "concurrency" and "locksandwaits". Only the "hpc-performance" and "memory-access" fail on KNL. Will On Wed, Jan 4, 2017, 8:09 PM D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>> wrote: Hi Will, Does this command work? > amplxe-cl –collect advanced-hotspots openmc Regards -michael From: Will Boyd [mailto:[email protected]<mailto:[email protected]>] Sent: Wednesday, January 04, 2017 4:25 PM To: Hammond, Jeff R <jeff.r.hammond(a)intel.com<mailto:[email protected]>>; D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>>; intel-nda(a)jlse.anl.gov<mailto:[email protected]> Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi I am trying to run VTune on KNL but am running into the following error: $ amplxe-cl -collect hpc-performance openmc amplxe: Error: both cgroup and no-aggregation modes only available in system-wide mode usage: perf stat [<options>] [<command>] -G, --cgroup <name> monitor event in cgroup name only -A, --no-aggr disable CPU count aggregation -a, --all-cpus system-wide collection from all CPUs This command works fine on a Haswell node, but breaks when I run it on KNL. I am able to run VTune with the "hotspots" collection argument without on KNL. Does anyone know how to resolve this issue? Thanks, Will On Tue, Dec 13, 2016 at 6:22 PM Hammond, Jeff R <jeff.r.hammond(a)intel.com<mailto:[email protected]>> wrote: FWIW based upon my experience trying unsuccessfully to debug why NWChem won’t run in the Vtune GUI, I recommend always using Vtune CLI. It’s a bad habit to get used to fancy features like GUIs and dynamic memory allocation if you want to be a serious HPC person ;-) Jeff From: <intel-nda-bounces(a)lists.jlse.anl.gov<mailto:[email protected]>> on behalf of Will Boyd <wbinventor(a)gmail.com<mailto:[email protected]>> Date: Tuesday, December 13, 2016 at 3:00 PM To: "D'mello, Michael" <michael.dmello(a)intel.com<mailto:[email protected]>>, "intel-nda(a)jlse.anl.gov<mailto:[email protected]>" <intel-nda(a)jlse.anl.gov<mailto:[email protected]>> Subject: Re: [JLSE-Intel-NDA] Using VTune remotely on the Phi Thank you Michael and Jeff. Downloading the results from the VTune CLI and importing them into the VTune GUI locally works great. On Tue, Dec 13, 2016 at 5:35 PM D'mello, Michael <michael.dmello(a)intel.com<mailto:[email protected]>> wrote: Hi Will, You can use the command line interface to collect the profiling information. For example: > amplxe_cl –collect hotspots ./a.out You can then move the results (entire directory) over to the environment (Windows or Linux) in which you would like to view the results. regards -michael From: intel-nda-bounces(a)lists.jlse.anl.gov<mailto:[email protected]> [mailto:[email protected]<mailto:[email protected]>] On Behalf Of Will Boyd Sent: Tuesday, December 13, 2016 4:30 PM To: intel-nda(a)jlse.anl.gov<mailto:[email protected]> Subject: [JLSE-Intel-NDA] Using VTune remotely on the Phi I am interested in profiling an application on the Phi using Intel VTune. I would like to use the graphical interface for VTune, but have been unable to launch VTune remotely using my local instance of VTune. Does anyone have any recommendations for how to remotely profile my application on the Phi but view the results locally with the VTune GUI on my workstation? Thanks, Will

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