October 2014 - Admins - mailman3.cels.anl.gov

Re: [JLSE-Admins] meeting notes 10/17
by Kazutomo Yoshii 17 Oct '14

17 Oct '14

> - would need to buy MIC cards or spread out the existing cards to create new MIC resources We don't think it's a good idea to buy new MIC cards because Knights Landing is coming. Let's distribute the cards we currently have if we get more host machines. - kaz On 10/17/2014 11:56 AM, Kenneth Raffenetti wrote: > I jotted these down from our discussion today. > > > > _______________________________________________ > Admins mailing list > Admins(a)lists.jlse.anl.gov > https://lists.jlse.anl.gov/mailman/listinfo/admins

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Re: [JLSE-Admins] meeting notes 10/17
by Allen, Benjamin S. 17 Oct '14

17 Oct '14

This is the hardware we're getting for the IIT Student Cluster challenge team. It's still a bit in flux. Ordered Parts: 1. Qty 8: X10DRi - http://www.supermicro.com/products/motherboard/Xeon/C600/X10DRi.cfm 2. Qty 64: Crucial CT16G4RFD4213 16GB DDR4 PC4 2133 ECC (8x8GB - 128GB total per node) 3. Qty 8: SuperChassis 747BTQ-R1K62B - http://www.supermicro.com/products/chassis/4u/747/sc747btq-r1k62.cfm 4. Qty 8: MCP-290-00059-0B (Rails) 5. Qty 8: MCP-320-00046-0N-KIT (Rear Fan Kit) 6. Qty 16: SNK-P0050AP4 (4U Active CPU Heat Sink for X9, X10 Workstations) 7. Qty 8: MCP-220-93801-0B (Black Hotswap Gen 6 3.5" to 2.5" HDD Tray) 8. Qty 2: APC AP7801 PDU Loaner Parts: - Qty 16: Intel E5-2699v3 CPUs (unknown loan period) - Qty 8: Mellanox Connect-IB MCB194A-FCAT 2-port PCIe 3.0 16x HCAs (60-day loan) - Qty 1: Mellanox SX6018 18-Port FDR Switch (60-day loan) Ben > On Oct 17, 2014, at 1:33 PM, Kazutomo Yoshii <kazutomo(a)mcs.anl.gov> wrote: > > Ben, > > Can you give us the detail of new host machines which become available after SC? > two-socket, 18-core E5-26XXv3 ? 8 servers total in total? also these are loaner from Intel? > > - kaz > > > On 10/17/2014 11:56 AM, Kenneth Raffenetti wrote: >> I jotted these down from our discussion today. >> >> >> >> _______________________________________________ >> Admins mailing list >> >> Admins(a)lists.jlse.anl.gov >> https://lists.jlse.anl.gov/mailman/listinfo/admins > > > > _______________________________________________ > Admins mailing list > Admins(a)lists.jlse.anl.gov > https://lists.jlse.anl.gov/mailman/listinfo/admins

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Re: [JLSE-Admins] meeting notes 10/17
by Kazutomo Yoshii 17 Oct '14

17 Oct '14

Ben, Can you give us the detail of new host machines which become available after SC? two-socket, 18-core E5-26XXv3 ? 8 servers total in total? also these are loaner from Intel? - kaz On 10/17/2014 11:56 AM, Kenneth Raffenetti wrote: > I jotted these down from our discussion today. > > > > _______________________________________________ > Admins mailing list > Admins(a)lists.jlse.anl.gov > https://lists.jlse.anl.gov/mailman/listinfo/admins

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[JLSE-Admins] meeting notes 10/17
by Kenneth Raffenetti 17 Oct '14

17 Oct '14

I jotted these down from our discussion today.

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Re: [JLSE-Admins] sudo
by Allen, Benjamin S. 16 Oct '14

16 Oct '14

Should be working now. Matt migrated the repo back to his development host. He was trying to bring up the RHEL7 mirror on our production repo server. Ben On Oct 16, 2014, at 4:13 PM, Kazutomo Yoshii <kazutomo(a)mcs.anl.gov> wrote: > > I got it about proxy. > > It seems 140.221.69.99 is still down. Please let me know if you have > heard anything from Matt. > > - kaz > > On 10/15/2014 10:45 PM, Allen, Benjamin S. wrote: >> JLSE doesn't have any routable networks. This is on purpose. We have a squid proxy http://proxy:3128. Otherwise use the logins to move data in and out of JLSE. >> >> Ben >> >> >> On Oct 15, 2014, at 10:16 PM, Kazutomo Yoshii <kazutomo(a)mcs.anl.gov> wrote: >> >>> Ben, >>> >>> Yes, it looks like 140.221.69.99 is down. Thank you for asking Matt! >>> >>> Another issue that 'osrspace' does not have a gateway, >>> so the packets cannot go outside. >>> >>> [ifcfg-eth0] >>> DEVICE=eth0 >>> BOOTPROTO=static >>> ONBOOT=yes >>> IPADDR=10.17.101.90 >>> NETMASK=255.255.0.0 >>> GATEWAY= >>> >>> What is the IP address of the gateway in 10.17.0.0/24 that goes outside? >>> >>> - kaz >>> >>> On 10/15/2014 07:59 PM, Allen, Benjamin S. wrote: >>>> Hi Kaz, >>>> >>>> I looks like our RHEL7 RPM mirror is down. I'll bug Matt tomorrow to take a look at it. >>>> >>>> Ben >>>> >>>> On Oct 15, 2014, at 6:42 PM, Kazutomo Yoshii <kazutomo(a)mcs.anl.gov> wrote: >>>> >>>>> Ben, >>>>> >>>>> Thanks! >>>>> >>>>> I couldn't install a new pkg via yum. >>>>> The yum confing points to 140.221.69.99 but 'osrspace' has no default gw. >>>>> Is there any special trick to make 'osrspace' able to access 140.221.69.99? >>>>> >>>>> - kaz >>>>> >>>>> On 10/15/2014 05:44 PM, Allen, Benjamin S. wrote: >>>>>> Fixed. >>>>>> >>>>>> Ben >>>>>> >>>>>> On Oct 15, 2014, at 5:29 PM, Kazutomo Yoshii <kazutomo(a)mcs.anl.gov> wrote: >>>>>> >>>>>>> [kazutomo@osrspace ~]$ sudo bash >>>>>>> [sudo] password for kazutomo: >>>>>>> kazutomo is not allowed to run sudo on osrspace. This incident will be >>>>>>> reported. >>>>>>> >>>>>>> I think I was able to sudo before. any timeout? >>>>>>> >>>>>>> - kaz >>>>>>> >>>>>>> _______________________________________________ >>>>>>> Admins mailing list >>>>>>> Admins(a)lists.jlse.anl.gov >>>>>>> https://lists.jlse.anl.gov/mailman/listinfo/admins >

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Re: [JLSE-Admins] sudo
by Kazutomo Yoshii 16 Oct '14

16 Oct '14

I got it about proxy. It seems 140.221.69.99 is still down. Please let me know if you have heard anything from Matt. - kaz On 10/15/2014 10:45 PM, Allen, Benjamin S. wrote: > JLSE doesn't have any routable networks. This is on purpose. We have a squid proxy http://proxy:3128. Otherwise use the logins to move data in and out of JLSE. > > Ben > > > On Oct 15, 2014, at 10:16 PM, Kazutomo Yoshii <kazutomo(a)mcs.anl.gov> wrote: > >> Ben, >> >> Yes, it looks like 140.221.69.99 is down. Thank you for asking Matt! >> >> Another issue that 'osrspace' does not have a gateway, >> so the packets cannot go outside. >> >> [ifcfg-eth0] >> DEVICE=eth0 >> BOOTPROTO=static >> ONBOOT=yes >> IPADDR=10.17.101.90 >> NETMASK=255.255.0.0 >> GATEWAY= >> >> What is the IP address of the gateway in 10.17.0.0/24 that goes outside? >> >> - kaz >> >> On 10/15/2014 07:59 PM, Allen, Benjamin S. wrote: >>> Hi Kaz, >>> >>> I looks like our RHEL7 RPM mirror is down. I'll bug Matt tomorrow to take a look at it. >>> >>> Ben >>> >>> On Oct 15, 2014, at 6:42 PM, Kazutomo Yoshii <kazutomo(a)mcs.anl.gov> wrote: >>> >>>> Ben, >>>> >>>> Thanks! >>>> >>>> I couldn't install a new pkg via yum. >>>> The yum confing points to 140.221.69.99 but 'osrspace' has no default gw. >>>> Is there any special trick to make 'osrspace' able to access 140.221.69.99? >>>> >>>> - kaz >>>> >>>> On 10/15/2014 05:44 PM, Allen, Benjamin S. wrote: >>>>> Fixed. >>>>> >>>>> Ben >>>>> >>>>> On Oct 15, 2014, at 5:29 PM, Kazutomo Yoshii <kazutomo(a)mcs.anl.gov> wrote: >>>>> >>>>>> [kazutomo@osrspace ~]$ sudo bash >>>>>> [sudo] password for kazutomo: >>>>>> kazutomo is not allowed to run sudo on osrspace. This incident will be >>>>>> reported. >>>>>> >>>>>> I think I was able to sudo before. any timeout? >>>>>> >>>>>> - kaz >>>>>> >>>>>> _______________________________________________ >>>>>> Admins mailing list >>>>>> Admins(a)lists.jlse.anl.gov >>>>>> https://lists.jlse.anl.gov/mailman/listinfo/admins

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Re: [JLSE-Admins] Project Request Form
by Kalyan Kumaran 16 Oct '14

16 Oct '14

Thanks, John! Ginny, please add this to the projects page. Thanks, Kumar On Oct 16, 2014, at 11:22 AM, Low, John J. <jlow(a)mcs.anl.gov> wrote: > Kumar, > > Does the attached word document work as a writeup? > > John J. Low > Principal Computational Science Specialist > Computing, Environment and Life Sciences > Building 240, 2143 > 9700 South Cass Avenue > Argonne National Laboratory > Argonne, IL 60439. > 630-252-0045 > www.linkedin.com/pub/john-low/15/8b0/5aa/ > > > > > > > On 10/16/14, 9:30 AM, "Kalyan Kumaran" <kumaran(a)anl.gov> wrote: > >> John, since you do not need any special hardware or test bed you can go >> ahead and get started. Please let us know if you need anything else? >> >> Could you provide a writeup for our webpage? Examples are below:? >> >> http://jlse.anl.gov/projects/ >> >> Thanks, >> Kumar >> >> >> On Oct 16, 2014, at 8:43 AM, John J. Low <jlow(a)mcs.anl.gov> wrote: >> >>> From: John J. Low <jlow(a)mcs.anl.gov> >>> Evaluation of computational chemistry codes on GPUs and PHIs. >>> John J. Low >>> CELS >>> Several community computational chemistry code has been ported to GPUs >>> and PHIs. Examples of such codes are BigDFT, Quantum Espresso, CP2K and >>> LAAMPS. I want to explore the efficiency of these code on GPUS and Phi >>> coprocessors. >>> NA >>> None >>> John J. Low >>> Jenny / Ruth / Lucie >>> [Schedule (when access is needed and for how long):] >>> >>> >>> -- >>> This e-mail was sent from a contact form on The Joint Laboratory for >>> System Evaluation (http://press3.mcs.anl.gov/jlse) >>> >>> _______________________________________________ >>> Admins mailing list >>> Admins(a)lists.jlse.anl.gov >>> https://lists.jlse.anl.gov/mailman/listinfo/admins >> > > <Computational Chemistry on the MIC.docx>

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Re: [JLSE-Admins] Project Request Form
by Low, John J. 16 Oct '14

16 Oct '14

Kumar, Does the attached word document work as a writeup? John J. Low Principal Computational Science Specialist Computing, Environment and Life Sciences Building 240, 2143 9700 South Cass Avenue Argonne National Laboratory Argonne, IL 60439. 630-252-0045 www.linkedin.com/pub/john-low/15/8b0/5aa/ On 10/16/14, 9:30 AM, "Kalyan Kumaran" <kumaran(a)anl.gov> wrote: >John, since you do not need any special hardware or test bed you can go >ahead and get started. Please let us know if you need anything else? > >Could you provide a writeup for our webpage? Examples are below:? > >http://jlse.anl.gov/projects/ > >Thanks, >Kumar > > >On Oct 16, 2014, at 8:43 AM, John J. Low <jlow(a)mcs.anl.gov> wrote: > >> From: John J. Low <jlow(a)mcs.anl.gov> >> Evaluation of computational chemistry codes on GPUs and PHIs. >> John J. Low >> CELS >> Several community computational chemistry code has been ported to GPUs >>and PHIs. Examples of such codes are BigDFT, Quantum Espresso, CP2K and >>LAAMPS. I want to explore the efficiency of these code on GPUS and Phi >>coprocessors. >> NA >> None >> John J. Low >> Jenny / Ruth / Lucie >> [Schedule (when access is needed and for how long):] >> >> >> -- >> This e-mail was sent from a contact form on The Joint Laboratory for >>System Evaluation (http://press3.mcs.anl.gov/jlse) >> >> _______________________________________________ >> Admins mailing list >> Admins(a)lists.jlse.anl.gov >> https://lists.jlse.anl.gov/mailman/listinfo/admins >

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Re: [JLSE-Admins] Project Request Form
by Kalyan Kumaran 16 Oct '14

16 Oct '14

John, since you do not need any special hardware or test bed you can go ahead and get started. Please let us know if you need anything else? Could you provide a writeup for our webpage? Examples are below:? http://jlse.anl.gov/projects/ Thanks, Kumar On Oct 16, 2014, at 8:43 AM, John J. Low <jlow(a)mcs.anl.gov> wrote: > From: John J. Low <jlow(a)mcs.anl.gov> > Evaluation of computational chemistry codes on GPUs and PHIs. > John J. Low > CELS > Several community computational chemistry code has been ported to GPUs and PHIs. Examples of such codes are BigDFT, Quantum Espresso, CP2K and LAAMPS. I want to explore the efficiency of these code on GPUS and Phi coprocessors. > NA > None > John J. Low > Jenny / Ruth / Lucie > [Schedule (when access is needed and for how long):] > > > -- > This e-mail was sent from a contact form on The Joint Laboratory for System Evaluation (http://press3.mcs.anl.gov/jlse) > > _______________________________________________ > Admins mailing list > Admins(a)lists.jlse.anl.gov > https://lists.jlse.anl.gov/mailman/listinfo/admins

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[JLSE-Admins] Project Request Form
by John J. Low 16 Oct '14

16 Oct '14

From: John J. Low <jlow(a)mcs.anl.gov> Evaluation of computational chemistry codes on GPUs and PHIs. John J. Low CELS Several community computational chemistry code has been ported to GPUs and PHIs. Examples of such codes are BigDFT, Quantum Espresso, CP2K and LAAMPS. I want to explore the efficiency of these code on GPUS and Phi coprocessors. NA None John J. Low Jenny / Ruth / Lucie [Schedule (when access is needed and for how long):] -- This e-mail was sent from a contact form on The Joint Laboratory for System Evaluation (http://press3.mcs.anl.gov/jlse)

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