On Aug 9, 2013, at 10:03 AM, Shane Canon <[email protected]> wrote:

FYI

* Fixed expression webroot * functional_ortholog_predictor: http://140.221.84.191/services/docs/FunctionalOrthologPredictor/

Oops, you're right. The alphabetical order that lists capitalized words separately threw me off (not for the first time). I wish the directories in services/docs matched the names of the modules. That would enable more automation and reduce human error. Nomi

On Aug 9, 2013, at 9:55 AM, Nomi Harris <[email protected]> wrote:

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Thanks. expression still has an extra webroot that needs to be removed.

Most of the modules now have API docs in the right place. The only exceptions: functional_ortholog_predictor (no dir in http://140.221.84.191/services/docs/) assembly: No obvious API doc in http://140.221.84.191/services/docs/assembly/ matR: has dir but no API doc shock_service: there is a "shock_store" (empty) directory in http://140.221.84.191/services/docs/ but no shock dir. Maybe a Makefile problem? typecomp: Has there been a decision that it doesn't need API docs since it's for internal use? Seems like it would still be useful to have API docs for the use of internal people.

On Aug 8, 2013, at 9:31 AM, Shane Canon <[email protected]> wrote:

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I fixed auth and expression.

--S

On Aug 8, 2013, at 9:22 AM, Nomi Harris <[email protected]> wrote:

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On Aug 7, 2013, at 7:58 PM, Michael Sneddon <[email protected]> wrote:

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Nearly all of the services that have been deployed passed the initial doc testing.

The two exceptions are 'sim_service', which is not deploying API docs at all (needs to add the proper doc generation and deployment code to its Makefile), and 'search', which was deployed to a test VM that I couldn't find (not available from t1 by ssh search ??), and has no docs appearing here: http://140.221.84.191/services/docs/search/

Bob fixed the Makefile and the API doc should appear when sim_service is redeployed.

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In addition, several modules do have proper documentation that seems to be properly deployed, but is not appearing here: http://140.221.84.191/services/docs . It's probably just a proxy issue, but here is the list of those modules:

auth_service The doc now appears where it should but there is an extra self-referential webroot link in http://140.221.84.191/services/docs/authorization_server/ so that you can go to, for example, http://140.221.84.191/services/docs/authorization_server/webroot/webroot/web...

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cluster_service Now ok

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expression Almost: the doc is at http://140.221.84.191/services/docs/expression/webroot/ExpressionServices.ht... rather than http://140.221.84.191/services/docs/expression/ExpressionServices.html as it should.

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KBaseFBAModeling Now ok, at http://140.221.84.191/services/docs/fbaModelServices/fbaModelServices.html

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plant_expression_service Now ok at http://140.221.84.191/services/docs/PlantExpressionService/PlantExpressionSe...

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