FYI  

* Fixed expression webroot

* functional_ortholog_predictor: http://140.221.84.191/services/docs/FunctionalOrthologPredictor/

On Aug 9, 2013, at 9:55 AM, Nomi Harris <nlharris@lbl.gov> wrote:

Thanks. expression still has an extra webroot that needs to be removed.

Most of the modules now have API docs in the right place. The only exceptions:

functional_ortholog_predictor (no dir in http://140.221.84.191/services/docs/)

assembly: No obvious API doc in http://140.221.84.191/services/docs/assembly/

matR: has dir but no API doc

shock_service: there is a "shock_store" (empty) directory in http://140.221.84.191/services/docs/ but no shock dir. Maybe a Makefile problem?

typecomp: Has there been a decision that it doesn't need API docs since it's for internal use? Seems like it would still be useful to have API docs for the use of internal people.

On Aug 8, 2013, at 9:31 AM, Shane Canon <scanon@lbl.gov> wrote:

I fixed auth and expression.

--S

On Aug 8, 2013, at 9:22 AM, Nomi Harris <nlharris@lbl.gov> wrote:

On Aug 7, 2013, at 7:58 PM, Michael Sneddon <mwsneddon@lbl.gov> wrote:

Nearly all of the services that have been deployed passed the initial doc testing.

The two exceptions are 'sim_service', which is not deploying API docs at all (needs to add the proper doc generation and deployment code to its Makefile), and 'search', which was deployed to a test VM that I couldn't find (not available from t1 by ssh search ??), and has no docs appearing here: http://140.221.84.191/services/docs/search/

Bob fixed the Makefile and the API doc should appear when sim_service is redeployed.

In addition, several modules do have proper documentation that seems to be properly deployed, but is not appearing here: http://140.221.84.191/services/docs . It's probably just a proxy issue, but here is the list of those modules:

auth_service

The doc now appears where it should but there is an extra self-referential webroot link in http://140.221.84.191/services/docs/authorization_server/ so that you can go to, for example,

http://140.221.84.191/services/docs/authorization_server/webroot/webroot/webroot/

cluster_service

Now ok

expression

Almost: the doc is at 
http://140.221.84.191/services/docs/expression/webroot/ExpressionServices.html rather than http://140.221.84.191/services/docs/expression/ExpressionServices.html as it should.

KBaseFBAModeling

Now ok, at 
http://140.221.84.191/services/docs/fbaModelServices/fbaModelServices.html

plant_expression_service

Now ok at http://140.221.84.191/services/docs/PlantExpressionService/PlantExpressionService.html

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