Looks like genome_annotation also didn’t get the latest pull. thneed:~ olson$ rast2-call-features-CDS-prodigal < buch.g > buch.f JSONRPC error: 'call_features_CDS_prodigal' is not a valid method in service GenomeAnnotation. JSONRPC error code: -32601 JSONRPC error data: On Feb 12, 2014, at 1:40 PM, Olson, Robert D. <[email protected]> wrote:
Yes, that was the latest push into git from upstream. From: Murphy-Olson, Daniel E. Sent: Wednesday, February 12, 2014 1:38 PM To: Olson, Robert D. Cc: [email protected] Subject: RE: [Release-team] CDMI redeploy
Sorry, git reference. I see this from last Thursday, ref 44365f26fa9a1cfeae5ef3b3c699c1643a050d32 which is what I bet you expected to find in production.
commit 44365f26fa9a1cfeae5ef3b3c699c1643a050d32 Author: Robert Olson <[email protected]> Date: Thu Feb 6 12:48:26 2014 -0600
Update to 1.074.
diff --git a/lib/AlignTree.pm b/lib/AlignTree.pm index aca15a9..bc9e72e 100644
I assume we need to be running this version?
---- Daniel Murphy-Olson Sr. Systems Administrator Computing, Environment and Life Sciences Division Argonne National Laboratory 630-252-0055 From: Olson, Robert D. Sent: Wednesday, February 12, 2014 1:31 PM To: Murphy-Olson, Daniel E. Cc: [email protected] Subject: RE: [Release-team] CDMI redeploy
ref?
From: Murphy-Olson, Daniel E. Sent: Wednesday, February 12, 2014 1:31 PM To: Olson, Robert D. Cc: [email protected] Subject: RE: [Release-team] CDMI redeploy
Can you tell me what ref has that, or should we just use master as of right now?
---- Daniel Murphy-Olson Sr. Systems Administrator Computing, Environment and Life Sciences Division Argonne National Laboratory 630-252-0055 From: Olson, Robert D. Sent: Wednesday, February 12, 2014 1:29 PM To: Murphy-Olson, Daniel E. Cc: [email protected] Subject: Re: [Release-team] CDMI redeploy
I don’t think that version has any of the support for the new ER model.
On Feb 12, 2014, at 1:19 PM, Murphy-Olson, Daniel E. <[email protected]> wrote:
It has the version that went through test during the last release cycle, from Jan 9th. Do we need a newer version than that?
---- Daniel Murphy-Olson Sr. Systems Administrator Computing, Environment and Life Sciences Division Argonne National Laboratory 630-252-0055 From: [email protected] [[email protected]] on behalf of Robert Olson [[email protected]] Sent: Wednesday, February 12, 2014 1:13 PM To: [email protected] Subject: [Release-team] CDMI redeploy
Did the central store service not get redeployed? I’m getting this with latest kb_seed client code:
olson@maple:~$ echo 'fig|83333.1.peg.4' | source_ids_to_fids JSONRPC error: 'source_ids_to_fids' is not a valid method in service CDMI_API. JSONRPC error code: -32601 JSONRPC error data:
Trace begun at /vol/kbase/deployment/lib/Bio/KBase/CDMI/Client.pm line 5967 Bio::KBase::CDMI::Client::source_ids_to_fids('Bio::KBase::CDMI::Client=HASH(0x4f44518)', 'ARRAY(0x4f82d98)') called at /vol/kbase/deployment/plbin/source_ids_to_fids.pl line 83
which looks like the service doesn’t have the new code in it.
—bob
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