Ok, the reason we're having problems with the master branch and the exact commit to pull from is as far as I can tell: 1) you are asking me to pull from the head of master. 2) the head of master has not been tested. 3) because the head of master has not been tested, there is no tag on it. 4) because there is no tag on it, the IRIS deploy process is pulling the last tagged commit. I'll go ahead and tag the head of master, and run it through the test process. If it passes the service test process, then I'll add it to the iris deployment. Sound good? On Oct 3, 2013, at 6:29 AM, Thomas Brettin <[email protected]> wrote:
ugh!
I'll check, thanks for helping.
Tom
On Oct 3, 2013, at 6:28 AM, James Gurtowski <[email protected]> wrote:
I think you are back to the first error now. Is this from the master branch?
James
On Wed, Oct 2, 2013 at 9:26 PM, Thomas Brettin <[email protected]> wrote: I upgraded to 1.7.0_25-b15.
Where's this at?
java -cp `find dist/jnomics-manager-*.jar` edu.cshl.schatz.jnomics.manager.client.CreateKbaseScripts jk bin Exception in thread "main" java.lang.NoClassDefFoundError: org/apache/commons/lang3/StringUtils at edu.cshl.schatz.jnomics.manager.client.CreateKbaseScripts.main(Unknown Source) Caused by: java.lang.ClassNotFoundException: org.apache.commons.lang3.StringUtils at java.net.URLClassLoader$1.run(URLClassLoader.java:366) at java.net.URLClassLoader$1.run(URLClassLoader.java:355) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(URLClassLoader.java:354) at java.lang.ClassLoader.loadClass(ClassLoader.java:424) at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308) at java.lang.ClassLoader.loadClass(ClassLoader.java:357) ... 1 more make[1]: *** [build-jnomics] Error 1 make[1]: Leaving directory `/kb/dev_container/modules/jnomics' make: *** [deploy] Error 1
root@t12:/kb/dev_container# echo $CLASSPATH /kb/runtime//lib/*:/kb/dev_container/modules/auth/dist/lib/*:/kb/dev_container/modules/idserver/dist/lib/*:/kb/dev_container/modules/invocation/dist/lib/*:/kb/dev_container/modules/kb_seed/dist/lib/*:/kb/dev_container/modules/kbapi_common/dist/lib/*:/kb/dev_container/modules/typecomp/dist/lib/*