- Release-team - mailman3.cels.anl.gov

Release
by Nomi Harris 19 Feb '13

19 Feb '13

How's the release going? Someone here asked me what was happening with the production deploy, and I wasn't sure, though I assume Dan et al. are working on it. Do we need to have another phone call to sync up? Nomi

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Re: [Release-team] plant ontolog, . expression, and co-expression networks in IRIS
by Thomas Brettin 15 Feb '13

15 Feb '13

On Feb 15, 2013, at 3:08 PM, "Yoo, Shinjae" <sjyoo(a)bnl.gov> wrote: > Thanks Tom, > > Plant expression service is ready to go and passed `make test`… > > Shane, please do `rm -rf /kb/deployment` first… > If not, it can not create `/kb/deployment/rsbin' directory. The make clean target does a rm -rf on ($TARGET) We need to fix this properly, though. The rest of the directories can be left in place, why not this? > > Thanks, > -SJ > > On Feb 15, 2013, at 3:57 PM, Thomas Brettin wrote: > >> Also, for the plant_expression service, you will need to pull changes to the dev_container out of the kbase.us git repo before doing the make. >> >> >> >> On Feb 15, 2013, at 2:56 PM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: >> >>> Hey Guys, I've been working with Shinjae. Here is where we stand (sorry if you already know this): >>> >>> 1) redeploy ontology_service immediately >>> 2) redeploy networks immediately >>> 3) redeploy plant_expression on Shinjae's command >>> >>> Shinjae needs to verify a few more things on plant_expression service. >>> >>> Tom >>> >>> >>> >>> >>> On Feb 15, 2013, at 10:43 AM, Sergei Maslov <maslov(a)bnl.gov> wrote: >>> >>>> Tom, >>>> >>>> I just wanted to confirm that these services will be available in IRIS. >>>> My understanding is that if it will pass all the tests it will start being deployed next Tuesday. >>>> >>>> I may be showing a video demo walking through these steps >>>> https://docs.google.com/document/d/1kIBk19jjWsegApoG4QNAKEZ48eBNae8jXQW8EFq… >>>> at the Bethesda meeting and I would like to record it using the IRIS interface. >>>> Shinjae promised to help with recording. >>>> >>>> Sergei >>>> >>>> -- >>>> Dr. Sergei Maslov, >>>> Department of Biology, >>>> Brookhaven National Laboratory, >>>> Upton, New York, 11973 >>>> Tel: (631) 344-3742; >>>> FAX: (631) 344-3407 >>>> E@mail: maslov(a)bnl.gov >>>> WWW: http://www.cmth.bnl.gov/~maslov >>>> >>> >>> Thomas Brettin >>> 865-603-7760 (cell) >>> brettin(a)mcs.anl.gov >>> >>> >>> >> >> Thomas Brettin >> 865-603-7760 (cell) >> brettin(a)mcs.anl.gov >> >> >> > Thomas Brettin 865-603-7760 (cell) brettin(a)mcs.anl.gov

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Re: [Release-team] plant ontolog, . expression, and co-expression networks in IRIS
by Shane Canon 15 Feb '13

15 Feb '13

ontology and networks should be ready. --Shane On Feb 15, 2013, at 12:56 PM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > Hey Guys, I've been working with Shinjae. Here is where we stand (sorry if you already know this): > > 1) redeploy ontology_service immediately > 2) redeploy networks immediately > 3) redeploy plant_expression on Shinjae's command > > Shinjae needs to verify a few more things on plant_expression service. > > Tom > > > > > On Feb 15, 2013, at 10:43 AM, Sergei Maslov <maslov(a)bnl.gov> wrote: > >> Tom, >> >> I just wanted to confirm that these services will be available in IRIS. >> My understanding is that if it will pass all the tests it will start being deployed next Tuesday. >> >> I may be showing a video demo walking through these steps >> https://docs.google.com/document/d/1kIBk19jjWsegApoG4QNAKEZ48eBNae8jXQW8EFq… >> at the Bethesda meeting and I would like to record it using the IRIS interface. >> Shinjae promised to help with recording. >> >> Sergei >> >> -- >> Dr. Sergei Maslov, >> Department of Biology, >> Brookhaven National Laboratory, >> Upton, New York, 11973 >> Tel: (631) 344-3742; >> FAX: (631) 344-3407 >> E@mail: maslov(a)bnl.gov >> WWW: http://www.cmth.bnl.gov/~maslov >> > > Thomas Brettin > 865-603-7760 (cell) > brettin(a)mcs.anl.gov > > > > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team

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Re: [Release-team] plant ontolog, . expression, and co-expression networks in IRIS
by Yoo, Shinjae 15 Feb '13

15 Feb '13

Thanks Tom, Plant expression service is ready to go and passed `make test`… Shane, please do `rm -rf /kb/deployment` first… If not, it can not create `/kb/deployment/rsbin' directory. Thanks, -SJ On Feb 15, 2013, at 3:57 PM, Thomas Brettin wrote: > Also, for the plant_expression service, you will need to pull changes to the dev_container out of the kbase.us git repo before doing the make. > > > > On Feb 15, 2013, at 2:56 PM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > >> Hey Guys, I've been working with Shinjae. Here is where we stand (sorry if you already know this): >> >> 1) redeploy ontology_service immediately >> 2) redeploy networks immediately >> 3) redeploy plant_expression on Shinjae's command >> >> Shinjae needs to verify a few more things on plant_expression service. >> >> Tom >> >> >> >> >> On Feb 15, 2013, at 10:43 AM, Sergei Maslov <maslov(a)bnl.gov> wrote: >> >>> Tom, >>> >>> I just wanted to confirm that these services will be available in IRIS. >>> My understanding is that if it will pass all the tests it will start being deployed next Tuesday. >>> >>> I may be showing a video demo walking through these steps >>> https://docs.google.com/document/d/1kIBk19jjWsegApoG4QNAKEZ48eBNae8jXQW8EFq… >>> at the Bethesda meeting and I would like to record it using the IRIS interface. >>> Shinjae promised to help with recording. >>> >>> Sergei >>> >>> -- >>> Dr. Sergei Maslov, >>> Department of Biology, >>> Brookhaven National Laboratory, >>> Upton, New York, 11973 >>> Tel: (631) 344-3742; >>> FAX: (631) 344-3407 >>> E@mail: maslov(a)bnl.gov >>> WWW: http://www.cmth.bnl.gov/~maslov >>> >> >> Thomas Brettin >> 865-603-7760 (cell) >> brettin(a)mcs.anl.gov >> >> >> > > Thomas Brettin > 865-603-7760 (cell) > brettin(a)mcs.anl.gov > > >

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Re: [Release-team] plant ontolog, . expression, and co-expression networks in IRIS
by Thomas Brettin 15 Feb '13

15 Feb '13

Also, for the plant_expression service, you will need to pull changes to the dev_container out of the kbase.us git repo before doing the make. On Feb 15, 2013, at 2:56 PM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > Hey Guys, I've been working with Shinjae. Here is where we stand (sorry if you already know this): > > 1) redeploy ontology_service immediately > 2) redeploy networks immediately > 3) redeploy plant_expression on Shinjae's command > > Shinjae needs to verify a few more things on plant_expression service. > > Tom > > > > > On Feb 15, 2013, at 10:43 AM, Sergei Maslov <maslov(a)bnl.gov> wrote: > >> Tom, >> >> I just wanted to confirm that these services will be available in IRIS. >> My understanding is that if it will pass all the tests it will start being deployed next Tuesday. >> >> I may be showing a video demo walking through these steps >> https://docs.google.com/document/d/1kIBk19jjWsegApoG4QNAKEZ48eBNae8jXQW8EFq… >> at the Bethesda meeting and I would like to record it using the IRIS interface. >> Shinjae promised to help with recording. >> >> Sergei >> >> -- >> Dr. Sergei Maslov, >> Department of Biology, >> Brookhaven National Laboratory, >> Upton, New York, 11973 >> Tel: (631) 344-3742; >> FAX: (631) 344-3407 >> E@mail: maslov(a)bnl.gov >> WWW: http://www.cmth.bnl.gov/~maslov >> > > Thomas Brettin > 865-603-7760 (cell) > brettin(a)mcs.anl.gov > > > Thomas Brettin 865-603-7760 (cell) brettin(a)mcs.anl.gov

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Re: [Release-team] plant ontolog, . expression, and co-expression networks in IRIS
by Thomas Brettin 15 Feb '13

15 Feb '13

Hey Guys, I've been working with Shinjae. Here is where we stand (sorry if you already know this): 1) redeploy ontology_service immediately 2) redeploy networks immediately 3) redeploy plant_expression on Shinjae's command Shinjae needs to verify a few more things on plant_expression service. Tom On Feb 15, 2013, at 10:43 AM, Sergei Maslov <maslov(a)bnl.gov> wrote: > Tom, > > I just wanted to confirm that these services will be available in IRIS. > My understanding is that if it will pass all the tests it will start being deployed next Tuesday. > > I may be showing a video demo walking through these steps > https://docs.google.com/document/d/1kIBk19jjWsegApoG4QNAKEZ48eBNae8jXQW8EFq… > at the Bethesda meeting and I would like to record it using the IRIS interface. > Shinjae promised to help with recording. > > Sergei > > -- > Dr. Sergei Maslov, > Department of Biology, > Brookhaven National Laboratory, > Upton, New York, 11973 > Tel: (631) 344-3742; > FAX: (631) 344-3407 > E@mail: maslov(a)bnl.gov > WWW: http://www.cmth.bnl.gov/~maslov > Thomas Brettin 865-603-7760 (cell) brettin(a)mcs.anl.gov

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Re: [Release-team] redeploy phispy
by Shane Canon 14 Feb '13

14 Feb '13

Ready. --S On Feb 14, 2013, at 9:15 AM, "Land, Miriam L." <landml(a)ornl.gov> wrote: > I'll mark phispy for redeploy. > > Miriam > > On 2/14/13 12:14 PM, "Thomas Brettin" <brettin(a)mcs.anl.gov> wrote: > >> Thanks, >> >> fixed server-tests >> >> tom >> >> >> Thomas Brettin >> 865-603-7760 (cell) >> brettin(a)mcs.anl.gov >> >> >> >> _______________________________________________ >> Release-team mailing list >> Release-team(a)lists.kbase.us >> https://lists.kbase.us/mailman/listinfo/release-team > > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team

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Re: [Release-team] redeploy phispy
by Land, Miriam L. 14 Feb '13

14 Feb '13

I'll mark phispy for redeploy. Miriam On 2/14/13 12:14 PM, "Thomas Brettin" <brettin(a)mcs.anl.gov> wrote: >Thanks, > >fixed server-tests > >tom > > >Thomas Brettin >865-603-7760 (cell) >brettin(a)mcs.anl.gov > > > >_______________________________________________ >Release-team mailing list >Release-team(a)lists.kbase.us >https://lists.kbase.us/mailman/listinfo/release-team

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redeploy phispy
by Thomas Brettin 14 Feb '13

14 Feb '13

Thanks, fixed server-tests tom Thomas Brettin 865-603-7760 (cell) brettin(a)mcs.anl.gov

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redeploy phispy requested
by Thomas Brettin 14 Feb '13

14 Feb '13

mods to make file mods to runtime added client tests tom Thomas Brettin 865-603-7760 (cell) brettin(a)mcs.anl.gov

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