November 2013 - Release-team - mailman3.cels.anl.gov

Re: [Release-team] [Kbase-devel] need list of deploy targets - please send list of modules that need to be deployed.
by Yoo, Shinjae 19 Nov '13

19 Nov '13

Hi Dan, Sorry for the late updates… interlog_projection is in git repo and it should be deployable as a service… gene conservation service still need to talk to Gang… Thanks, -SJ On Nov 18, 2013, at 11:25 PM, Murphy-Olson, Daniel E. <dolson(a)mcs.anl.gov> wrote: > Hi Shinjae, > > Both of these repos are currently empty. What is the status of the code for these modules? Are you ready for deployment? > > ---- > Daniel Murphy-Olson > Systems Administrator > Mathematics & Computer Science Division > Argonne National Laboratory > 630-252-0055 > > ________________________________________ > From: Yoo, Shinjae [sjyoo(a)bnl.gov] > Sent: Wednesday, November 13, 2013 3:21 PM > To: Thomas Brettin; Taeyun Oh; Gang Fang > Cc: release-team(a)kbase.us > Subject: Re: [Kbase-devel] need list of deploy targets - please send list of modules that need to be deployed. > > Tom, > > We need two repo: > > - interlog_projection > Owner: Taeyun and Gang > - gene_conservation > Owner: Gang > > I’m helping them to bring services to KBase. > > Thanks, > -SJ > > > On Nov 13, 2013, at 4:08 PM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > >> >> Please send the release team a note if your module(s) have changed and should be deployed to prod. >> >> Tom >> _______________________________________________ >> Kbase-devel mailing list >> Kbase-devel(a)lists.kbase.us >> https://lists.kbase.us/mailman/listinfo/kbase-devel >

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Re: [Release-team] [Kbase-devel] need list of deploy targets - please send list of modules that need to be deployed.
by Murphy-Olson, Daniel E. 18 Nov '13

18 Nov '13

Hi Shinjae, Both of these repos are currently empty. What is the status of the code for these modules? Are you ready for deployment? ---- Daniel Murphy-Olson Systems Administrator Mathematics & Computer Science Division Argonne National Laboratory 630-252-0055 ________________________________________ From: Yoo, Shinjae [sjyoo(a)bnl.gov] Sent: Wednesday, November 13, 2013 3:21 PM To: Thomas Brettin; Taeyun Oh; Gang Fang Cc: release-team(a)kbase.us Subject: Re: [Kbase-devel] need list of deploy targets - please send list of modules that need to be deployed. Tom, We need two repo: - interlog_projection Owner: Taeyun and Gang - gene_conservation Owner: Gang I’m helping them to bring services to KBase. Thanks, -SJ On Nov 13, 2013, at 4:08 PM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > > Please send the release team a note if your module(s) have changed and should be deployed to prod. > > Tom > _______________________________________________ > Kbase-devel mailing list > Kbase-devel(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/kbase-devel

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Re: [Release-team] [Kbase-devel] need list of deploy targets - please send list of modules that need to be deployed.
by Nomi Harris 18 Nov '13

18 Nov '13

I will start rows for these on the Master tab (https://docs.google.com/spreadsheet/ccc?key=0AriSbOyynCz1dDdJRHJBcGszaldlUE…) — please add more info. For the current build, are we using the Nov 4 tab, https://docs.google.com/spreadsheet/ccc?key=0AriSbOyynCz1dDdJRHJBcGszaldlUE… ? Nomi On Nov 14, 2013, at 2:24 AM, Yoo, Shinjae <sjyoo(a)bnl.gov> wrote: > Tom, > >> 11 18:54 git clone [email protected]:interlog_projection > > Project Network object from one species to the other species with various methods > >> 18 18:55 git clone [email protected]:gene_conservation > > > Analyze the gene conservation between two species > > I target to deploy both services in next week builds. > > Thanks, > -SJ > > > On Nov 13, 2013, at 7:56 PM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > >> 11 18:54 git clone [email protected]:interlog_projection >> 18 18:55 git clone [email protected]:gene_conservation >> >> Would still like the one line descriptions. >> >> The repos are created >> >> Tom >> >> >> >> On Nov 13, 2013, at 3:21 PM, "Yoo, Shinjae" <sjyoo(a)bnl.gov> wrote: >> >>> Tom, >>> >>> We need two repo: >>> >>> - interlog_projection >>> Owner: Taeyun and Gang >>> - gene_conservation >>> Owner: Gang >>> >>> I’m helping them to bring services to KBase. >>> >>> Thanks, >>> -SJ >>> >>> >>> On Nov 13, 2013, at 4:08 PM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: >>> >>>> >>>> Please send the release team a note if your module(s) have changed and should be deployed to prod. >>>> >>>> Tom >>>> _______________________________________________ >>>> Kbase-devel mailing list >>>> Kbase-devel(a)lists.kbase.us >>>> https://lists.kbase.us/mailman/listinfo/kbase-devel >>> >> > > _______________________________________________ > Release-team mailing list > Release-team(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/release-team

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Invocation can go out
by Thomason, James 18 Nov '13

18 Nov '13

Invocation should be ready to go. I hope. I assume. Lemme know if (when?) things break as deploy is attempted. -- -Jim Thomason... Computational Science Developer @ The Ware Lab, a USDA-ARS Laboratory at Cold Spring Harbor Laboratory http://www.warelab.org/ http://www.cshl.edu/

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Stuff to go out
by Thomason, James 18 Nov '13

18 Nov '13

I’ll want invocation to go out. I’m finishing off getting everything integrated in now and giving it a last QA sweep, I’ll shoot you a note shortly when I think it’s all set. -- -Jim Thomason... Computational Science Developer @ The Ware Lab, a USDA-ARS Laboratory at Cold Spring Harbor Laboratory http://www.warelab.org/ http://www.cshl.edu/

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assembly module for release
by Fangfang Xia 18 Nov '13

18 Nov '13

Hi, Could you please put 'assembly' on the release list? Thanks, Fangfang

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Re: [Release-team] [Kbase-devel] need list of deploy targets - please send list of modules that need to be deployed.
by Nomi Harris 14 Nov '13

14 Nov '13

At some point, I need a list of new services that need to be added to http://www.kbase.us/developer-zone/services/ I see Compression Based Distance is not yet on there. All services (including new ones) should have an entry in the Master tab of the Services spreadsheet, https://docs.google.com/spreadsheet/ccc?key=0AriSbOyynCz1dDdJRHJBcGszaldlUE… Should I add a new column to that spreadsheet (“Nov 2013: Add to/delete from Services page”)? There are already so many columns... Also, please let me know if there are any services that should be removed from http://www.kbase.us/developer-zone/services/ (such as PROM, which is currently not working and I’m told there are no immediate plans to fix it). Nomi On Nov 14, 2013, at 12:14 PM, Mundy, Michael B. (Mike) <Mundy.Michael(a)mayo.edu> wrote: > Please deploy the compression based distance service. I've updated it to > use the new user and job state service instead of the workspace service > for job management and add some more commands. > > Mike Mundy | Senior Analyst Programmer | Bioinformatics > Systems Unit | 507-266-7232 | mundy.michael(a)mayo.edu > Mayo Clinic | 200 First Street SW | Rochester, MN 55905 | mayoclinic.org > <http://www.mayoclinic.org> > > > On 11/13/13 3:08 PM, "Thomas Brettin" <brettin(a)mcs.anl.gov> wrote: > >> >> Please send the release team a note if your module(s) have changed and >> should be deployed to prod. >> >> Tom

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Re: [Release-team] [Kbase-devel] need list of deploy targets - please send list of modules that need to be deployed.
by Mundy, Michael B. (Mike) 14 Nov '13

14 Nov '13

Please deploy the compression based distance service. I've updated it to use the new user and job state service instead of the workspace service for job management and add some more commands. Mike Mundy | Senior Analyst Programmer | Bioinformatics Systems Unit | 507-266-7232 | mundy.michael(a)mayo.edu Mayo Clinic | 200 First Street SW | Rochester, MN 55905 | mayoclinic.org <http://www.mayoclinic.org> On 11/13/13 3:08 PM, "Thomas Brettin" <brettin(a)mcs.anl.gov> wrote: > >Please send the release team a note if your module(s) have changed and >should be deployed to prod. > >Tom >_______________________________________________ >Kbase-devel mailing list >Kbase-devel(a)lists.kbase.us >https://lists.kbase.us/mailman/listinfo/kbase-devel

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Re: [Release-team] [Kbase-devel] need list of deploy targets - please send list of modules that need to be deployed.
by Yoo, Shinjae 14 Nov '13

14 Nov '13

Tom, > 11 18:54 git clone [email protected]:interlog_projection Project Network object from one species to the other species with various methods > 18 18:55 git clone [email protected]:gene_conservation Analyze the gene conservation between two species I target to deploy both services in next week builds. Thanks, -SJ On Nov 13, 2013, at 7:56 PM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > 11 18:54 git clone [email protected]:interlog_projection > 18 18:55 git clone [email protected]:gene_conservation > > Would still like the one line descriptions. > > The repos are created > > Tom > > > > On Nov 13, 2013, at 3:21 PM, "Yoo, Shinjae" <sjyoo(a)bnl.gov> wrote: > >> Tom, >> >> We need two repo: >> >> - interlog_projection >> Owner: Taeyun and Gang >> - gene_conservation >> Owner: Gang >> >> I’m helping them to bring services to KBase. >> >> Thanks, >> -SJ >> >> >> On Nov 13, 2013, at 4:08 PM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: >> >>> >>> Please send the release team a note if your module(s) have changed and should be deployed to prod. >>> >>> Tom >>> _______________________________________________ >>> Kbase-devel mailing list >>> Kbase-devel(a)lists.kbase.us >>> https://lists.kbase.us/mailman/listinfo/kbase-devel >> >

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Re: [Release-team] [Kbase-devel] need list of deploy targets - please send list of modules that need to be deployed.
by Thomas Brettin 13 Nov '13

13 Nov '13

11 18:54 git clone [email protected]:interlog_projection 18 18:55 git clone [email protected]:gene_conservation Would still like the one line descriptions. The repos are created Tom On Nov 13, 2013, at 3:21 PM, "Yoo, Shinjae" <sjyoo(a)bnl.gov> wrote: > Tom, > > We need two repo: > > - interlog_projection > Owner: Taeyun and Gang > - gene_conservation > Owner: Gang > > I’m helping them to bring services to KBase. > > Thanks, > -SJ > > > On Nov 13, 2013, at 4:08 PM, Thomas Brettin <brettin(a)mcs.anl.gov> wrote: > >> >> Please send the release team a note if your module(s) have changed and should be deployed to prod. >> >> Tom >> _______________________________________________ >> Kbase-devel mailing list >> Kbase-devel(a)lists.kbase.us >> https://lists.kbase.us/mailman/listinfo/kbase-devel >

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