I just put together the beginnings of what the user interface might look like. You can check progress here: http://metaboliteatlas.lbl.gov/~bpb/Demo/reconExplorer/reconciliationExplore... Some imagination is still required, but the majority of the mechanics are in place. Next, I'll import a toy json object that looks like what the gapfillGlobal will generate, and post a json object when your done selecting changes to the model. ----------------------------- Email: [email protected] Phone: (510) 214-6683 MS 977-221, Lawrence Berkeley Lab Web: ms.lbl.gov On Sat, Nov 3, 2012 at 11:33 PM, Adam Paul Arkin <[email protected]> wrote:

That is really nice.

Sent from my mobile device. Please excuse any seeming terseness or errors.

Adam Paul Arkin Dean A. Richard Newton Memorial Chair ------------------------------------- Director, Physical Biosciences Division E.O. Lawrence Berkeley National Laboratory

Professor, Department of Bioengineering University of California Berkeley, CA, 94720

PI and Co-Director, Virtual Institute of Microbial Stress and Survival, http://vimss.lbl.gov Director of Bioinformatics, The Joint Bioenergy Institute, http://jbei.lbl.gov Investigator, Energy Biosciences Institute, http://energybiosciencesinstitute.org Head, Synthetic Biology, Physical Biosciences Division, Lawrence Berkeley National Laboratory

Office: 309B Hildebrand Hall (Berkeley Campus) Mailing address: E.O. Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS Stanley-922 Berkeley, CA 94720

Contact: W: http://genomics.lbl.gov V: 510-495-2366 C: 510-206-1389 F: 510-486-6219

Assistant: Gwyneth A. Terry V: 510-495-2116 E: [email protected] -------------------------------------

On Nov 3, 2012, at 9:03 PM, Christopher Henry <[email protected]> wrote:

...

i love it!!!! We most definitely should do it. ASAP. Something like that could bring real shock and awe to the demo...

On Nov 3, 2012, at 8:59 PM, Ben Bowen wrote:

...

If you go to this link and click "next" http://elections.nytimes.com/2012/electoral-map there is a nice d3 visualization.

Instead of states: think media conditions (we have ~100) Instead of electoral votes for radius: think how many discrepancies were resolved Instead of dragging to explore voting outcomes: think which changes to the model you want to accept. Instead of tooltips with electoral votes: have option to select 1, 2, or 3 best modification to the model.

Add a button at the bottom for "commit" and get a nice, shiny new model to play with.

----------------------------- Email: [email protected] Phone: (510) 214-6683 MS 977-221, Lawrence Berkeley Lab Web: ms.lbl.gov _______________________________________________ Microbe mailing list [email protected] https://lists.kbase.us/mailman/listinfo/microbe

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