will the model changes be clustered or linked somehow? I'm not quite sure how this interface makes displaying the results clearer/easier to understand - it looks like the model changes are arbitrarily placed. -g On 11/5/2012 3:43 PM, Ben Bowen wrote:

I just put together the beginnings of what the user interface might look like. You can check progress here:

http://metaboliteatlas.lbl.gov/~bpb/Demo/reconExplorer/reconciliationExplore... <http://metaboliteatlas.lbl.gov/%7Ebpb/Demo/reconExplorer/reconciliationExplorer3.html>

Some imagination is still required, but the majority of the mechanics are in place.

Next, I'll import a toy json object that looks like what the gapfillGlobal will generate, and post a json object when your done selecting changes to the model.

----------------------------- Email: [email protected] <mailto:[email protected]> Phone: (510) 214-6683 MS 977-221, Lawrence Berkeley Lab Web: ms.lbl.gov <http://ms.lbl.gov>

On Sat, Nov 3, 2012 at 11:33 PM, Adam Paul Arkin <[email protected] <mailto:[email protected]>> wrote:

That is really nice.

Sent from my mobile device. Please excuse any seeming terseness or errors.

Adam Paul Arkin Dean A. Richard Newton Memorial Chair ------------------------------------- Director, Physical Biosciences Division E.O. Lawrence Berkeley National Laboratory

Professor, Department of Bioengineering University of California Berkeley, CA, 94720

PI and Co-Director, Virtual Institute of Microbial Stress and Survival, http://vimss.lbl.gov Director of Bioinformatics, The Joint Bioenergy Institute, http://jbei.lbl.gov Investigator, Energy Biosciences Institute, http://energybiosciencesinstitute.org Head, Synthetic Biology, Physical Biosciences Division, Lawrence Berkeley National Laboratory

Office: 309B Hildebrand Hall (Berkeley Campus) Mailing address: E.O. Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS Stanley-922 Berkeley, CA 94720

Contact: W: http://genomics.lbl.gov V: 510-495-2366 <tel:510-495-2366> C: 510-206-1389 <tel:510-206-1389> F: 510-486-6219 <tel:510-486-6219>

Assistant: Gwyneth A. Terry V: 510-495-2116 <tel:510-495-2116> E: [email protected] <mailto:[email protected]> -------------------------------------

On Nov 3, 2012, at 9:03 PM, Christopher Henry <[email protected] <mailto:[email protected]>> wrote:

> i love it!!!! We most definitely should do it. ASAP. > Something like that could bring real shock and awe to the demo... > > On Nov 3, 2012, at 8:59 PM, Ben Bowen wrote: > >> If you go to this link and click "next" >> http://elections.nytimes.com/2012/electoral-map >> there is a nice d3 visualization. >> >> Instead of states: think media conditions (we have ~100) >> Instead of electoral votes for radius: think how many discrepancies were resolved >> Instead of dragging to explore voting outcomes: think which changes to the model you want to accept. >> Instead of tooltips with electoral votes: have option to select 1, 2, or 3 best modification to the model. >> >> Add a button at the bottom for "commit" and get a nice, shiny new model to play with. >> >> ----------------------------- >> Email: [email protected] <mailto:[email protected]> >> Phone: (510) 214-6683 <tel:%28510%29%20214-6683> >> MS 977-221, Lawrence Berkeley Lab >> Web: ms.lbl.gov <http://ms.lbl.gov> >> _______________________________________________ >> Microbe mailing list >> [email protected] <mailto:[email protected]> >> https://lists.kbase.us/mailman/listinfo/microbe > > _______________________________________________ > Microbe mailing list > [email protected] <mailto:[email protected]> > https://lists.kbase.us/mailman/listinfo/microbe

_______________________________________________ Microbe mailing list [email protected] https://lists.kbase.us/mailman/listinfo/microbe