Hi Steven, this is only for the 18month demo. SIFTER isn't being used for the first pass annotation because we are using the MicrobesOnline decorated trees as input to SIFTER. Our work flow is to get structural and functional annotations from RAST, make trees in MicrobesOnline and then refine annotations with SIFTER. Paramvir On Thu, Sep 22, 2011 at 9:23 AM, Steven E. Brenner <[email protected]> wrote:
Hi,
I'm not sure why SIFTER isn't being used for the first-pass annotation. My understanding was that RAST would be used for metagenomics due to speed issues with SIFTER.
Steven
On Thu, 22 Sep 2011, Paramvir Dehal wrote:
I added a bit about projecting our other omics data onto the models. I accidentally a word in that last email. We should have a color code for development verses new functionality.
On Thu, Sep 22, 2011 at 8:52 AM, Paramvir Dehal <[email protected]> wrote:
I'll make my changes to this. We have a color code for development verses existing functionality. It's not clear that the new development is in the kbase layer as opposed to within the cores.
On Thu, Sep 22, 2011 at 8:35 AM, Christopher Henry <[email protected]> wrote:
Okay. I realize I never explained the meaning of the colors. I added a key for this, and I deleted the first slide. Chris
-----Original Message----- From: Paramvir Dehal [mailto:[email protected]] Sent: Thursday, September 22, 2011 10:32 AM To: Christopher Henry Cc: KBase Microbes List Subject: Re: [Microbe] Complete Microbes Demo Workflow
Hi all,
I added a couple boxes and SIFTER. I'll try and add a bit more stuff, but I might be constrained by space.
Paramvir
On Thu, Sep 22, 2011 at 8:03 AM, Christopher Henry <[email protected]> wrote:
Hi all,
Complete microbes demo workflow is attached. Look at slide 2, not slide 1. Please modify if you think things are missing and need to be added. For example, sifter isn't on there.
Chris
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