March 2013 - Microbe - mailman3.cels.anl.gov

microbes self review
by Paramvir Dehal 11 Mar '13

11 Mar '13

As part of our goal to improve how we operate. I think this is a good time for us to review ourselves. I'd like for us to look over our code - services, scripts, UI, etc. Now is a good opportunity to make sure we're doing things the right way. The outline of the review is not set, and I'd like your input on what it should cover. Basically, we're looking for what we need to fix/refactor and lessons for how we ought to do things going forward. I have three broad topic areas for the review in this google doc: https://docs.google.com/a/lbl.gov/document/d/1ebc6jWxnudsOtZWo3RNoWDhFFDFG3… Feel free to add/change and comment on it over email and in the doc. Let's try and have this done today. And start the review on Tuesday. Operationally, the review will be each developer describing their code to another person in the context of the review areas. And then each developer will write up a couple sentences on dependencies and things that need to be refactored. And everyone will work out a list of topics for what we can improve on. Hopefully, this will be a fast process and we can report back on our next Monday call 3/18. Paramvir

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call today 11am P / 1pm C
by Paramvir Dehal 11 Mar '13

11 Mar '13

We've got our call today: *866-740-1260 Code: 4958182 * * * *Let me know if you've got any agenda items to add. I'd like to have some discussion about doing a mini self review. Mostly focusing on our services and that they're focused at the right level.* * * *Paramvir*

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Re: [Microbe] Call today
by Chris Henry 04 Mar '13

04 Mar '13

Guys, I'm tied up in another meeting I can't leave. I'm going to miss this call today. On Mar 4, 2013 1:05 PM, "Keith Keller" <kkeller(a)lbl.gov> wrote: > Anyone have the correct phone number/code? I tried three of them, and > got "incorrect pass code" twice, and no connection once. > > --keith > > On Mon, Mar 4, 2013 at 8:03 AM, Paramvir Dehal <psdehal(a)lbl.gov> wrote: > > Hey guys, > > > > We have a call today at 11am Pacific / 1pm Central. I won't be able to > make > > the call today, but I think you guys should meet anyway. This is a good > time > > to discuss the loose ends from the demo before jumping into starting new > > projects. Also, if Chris can call in, ask him to give a run down of the > > meeting. > > > > Paramvir > > > > _______________________________________________ > > Microbe mailing list > > Microbe(a)lists.kbase.us > > https://lists.kbase.us/mailman/listinfo/microbe > > > > > > -- > Keith Keller > kkeller(a)lbl.gov > Physical Biosciences Division, Lawrence Berkeley National Lab > _______________________________________________ > Microbe mailing list > Microbe(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/microbe >

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Re: [Microbe] Call today
by Ben Bowen 04 Mar '13

04 Mar '13

If someone starts the call please let me know. -------------- Email: BPBowen(a)lbl.gov Phone: (510) 214-6683 MS 977-221, Lawrence Berkeley Lab Web: ms.lbl.gov On Mon, Mar 4, 2013 at 11:09 AM, Keith Keller <kkeller(a)lbl.gov> wrote: > On Mon, Mar 4, 2013 at 11:07 AM, John-Marc Chandonia > <JMChandonia(a)lbl.gov> wrote: >> On Mon, Mar 04, 2013 at 11:05:50AM -0800, Keith Keller wrote: >>> Anyone have the correct phone number/code? I tried three of them, and >>> got "incorrect pass code" twice, and no connection once. >> >> My calendar has 4958182 as the passcode--has this changed? >> I'm still getting the on-hold music and "waiting for chairman" >> message. > > That's farther than I got! What phone number are you using? > > --keith > > -- > Keith Keller > kkeller(a)lbl.gov > Physical Biosciences Division, Lawrence Berkeley National Lab > _______________________________________________ > Microbe mailing list > Microbe(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/microbe

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Re: [Microbe] Call today
by John-Marc Chandonia 04 Mar '13

04 Mar '13

On Mon, Mar 04, 2013 at 11:09:11AM -0800, Keith Keller wrote: > On Mon, Mar 4, 2013 at 11:07 AM, John-Marc Chandonia > <JMChandonia(a)lbl.gov> wrote: > > On Mon, Mar 04, 2013 at 11:05:50AM -0800, Keith Keller wrote: > >> Anyone have the correct phone number/code? I tried three of them, and > >> got "incorrect pass code" twice, and no connection once. > > > > My calendar has 4958182 as the passcode--has this changed? > > I'm still getting the on-hold music and "waiting for chairman" > > message. > > That's farther than I got! What phone number are you using? 866-740-1260 JMC -- John-Marc Chandonia (JMChandonia(a)lbl.gov) We're everywhere... Physical Biosciences Division, Berkeley National Lab for your convenience. http://www.strgen.org/~jmc/ -- Psi Corps <*>

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Re: [Microbe] Call today
by Keith Keller 04 Mar '13

04 Mar '13

On Mon, Mar 4, 2013 at 11:07 AM, John-Marc Chandonia <JMChandonia(a)lbl.gov> wrote: > On Mon, Mar 04, 2013 at 11:05:50AM -0800, Keith Keller wrote: >> Anyone have the correct phone number/code? I tried three of them, and >> got "incorrect pass code" twice, and no connection once. > > My calendar has 4958182 as the passcode--has this changed? > I'm still getting the on-hold music and "waiting for chairman" > message. That's farther than I got! What phone number are you using? --keith -- Keith Keller kkeller(a)lbl.gov Physical Biosciences Division, Lawrence Berkeley National Lab

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Re: [Microbe] Call today
by John-Marc Chandonia 04 Mar '13

04 Mar '13

On Mon, Mar 04, 2013 at 11:05:50AM -0800, Keith Keller wrote: > Anyone have the correct phone number/code? I tried three of them, and > got "incorrect pass code" twice, and no connection once. My calendar has 4958182 as the passcode--has this changed? I'm still getting the on-hold music and "waiting for chairman" message. JMC -- John-Marc Chandonia (JMChandonia(a)lbl.gov) We're everywhere... Physical Biosciences Division, Berkeley National Lab for your convenience. http://www.strgen.org/~jmc/ -- Psi Corps <*>

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Re: [Microbe] Call today
by Ben Bowen 04 Mar '13

04 Mar '13

I'm on 4958182, and no one is calling in. -------------- Email: BPBowen(a)lbl.gov Phone: (510) 214-6683 MS 977-221, Lawrence Berkeley Lab Web: ms.lbl.gov On Mon, Mar 4, 2013 at 11:05 AM, Keith Keller <kkeller(a)lbl.gov> wrote: > Anyone have the correct phone number/code? I tried three of them, and > got "incorrect pass code" twice, and no connection once. > > --keith > > On Mon, Mar 4, 2013 at 8:03 AM, Paramvir Dehal <psdehal(a)lbl.gov> wrote: >> Hey guys, >> >> We have a call today at 11am Pacific / 1pm Central. I won't be able to make >> the call today, but I think you guys should meet anyway. This is a good time >> to discuss the loose ends from the demo before jumping into starting new >> projects. Also, if Chris can call in, ask him to give a run down of the >> meeting. >> >> Paramvir >> >> _______________________________________________ >> Microbe mailing list >> Microbe(a)lists.kbase.us >> https://lists.kbase.us/mailman/listinfo/microbe >> > > > > -- > Keith Keller > kkeller(a)lbl.gov > Physical Biosciences Division, Lawrence Berkeley National Lab > _______________________________________________ > Microbe mailing list > Microbe(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/microbe

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Re: [Microbe] Call today
by Keith Keller 04 Mar '13

04 Mar '13

Anyone have the correct phone number/code? I tried three of them, and got "incorrect pass code" twice, and no connection once. --keith On Mon, Mar 4, 2013 at 8:03 AM, Paramvir Dehal <psdehal(a)lbl.gov> wrote: > Hey guys, > > We have a call today at 11am Pacific / 1pm Central. I won't be able to make > the call today, but I think you guys should meet anyway. This is a good time > to discuss the loose ends from the demo before jumping into starting new > projects. Also, if Chris can call in, ask him to give a run down of the > meeting. > > Paramvir > > _______________________________________________ > Microbe mailing list > Microbe(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/microbe > -- Keith Keller kkeller(a)lbl.gov Physical Biosciences Division, Lawrence Berkeley National Lab

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Re: [Microbe] Call today
by Matt DeJongh 04 Mar '13

04 Mar '13

I'm at the Pathway Tools Workshop. Matt On Mon, Mar 4, 2013 at 8:26 AM, Steven E. Brenner < brenner(a)compbio.berkeley.edu> wrote: > I'm at the same meeting as Paramvir. > > Steven > > > On Mon, 4 Mar 2013, Christopher Henry wrote: > > Yeah, I will be there today. >> Chris >> >> On Mar 4, 2013, at 10:08 AM, "Davison, Brian H." <davisonbh(a)ornl.gov> >> wrote: >> >> Paramvir – >>> I can be on for the first 25 min and if needed could also comment on the >>> meeting and breakout. >>> Brian >>> >>> From: microbe-bounces(a)lists.kbase.us [mailto:microbe-bounces@lists.** >>> kbase.us <microbe-bounces(a)lists.kbase.us>] On Behalf Of Paramvir Dehal >>> Sent: Monday, March 04, 2013 11:03 AM >>> To: KBase Microbes List >>> Subject: [Microbe] Call today >>> >>> Hey guys, >>> >>> We have a call today at 11am Pacific / 1pm Central. I won't be able to >>> make the call today, but I think you guys should meet anyway. This is a >>> good time to discuss the loose ends from the demo before jumping into >>> starting new projects. Also, if Chris can call in, ask him to give a run >>> down of the meeting. >>> >>> Paramvir >>> ______________________________**_________________ >>> Microbe mailing list >>> Microbe(a)lists.kbase.us >>> https://lists.kbase.us/**mailman/listinfo/microbe<https://lists.kbase.us/mailman/listinfo/microbe> >>> >> >> ______________________________**_________________ >> Microbe mailing list >> Microbe(a)lists.kbase.us >> https://lists.kbase.us/**mailman/listinfo/microbe<https://lists.kbase.us/mailman/listinfo/microbe> >> > > _______________________________________________ > Microbe mailing list > Microbe(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/microbe > > -- Matt DeJongh, Ph.D. Computer Science Department Hope College, Holland, MI 49423 (616) 395-7429

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