September 2012 - Microbe - mailman3.cels.anl.gov

Microbes meeting today, 11am PST, 1pm CST [was: Re: Microbes mtg today?]
by Gavin Price 10 Sep '12

10 Sep '12

Ready talk call in #: 1-866-740-1260 code 4958182 If Paramvir isn't calling in, I have the operator code and will start the conf. Please send any agenda items we need to discuss to me and I'll roll them up in an email slightly prior to the meeting. -g On 9/10/2012 9:19 AM, Paramvir Dehal wrote: > We should still have one. Gavin, can you collect agenda items and send > out the reminder email? > > Pavel, John-Marc and Bill are also at this conference. > > > > On Mon, Sep 10, 2012 at 7:46 AM, Gavin Price<gaprice(a)lbl.gov> wrote: >> Not sure if we're having one since paramvir is at a conference. >> >> -g >> >> >> _______________________________________________ >> Microbe mailing list >> Microbe(a)lists.kbase.us >> https://lists.kbase.us/mailman/listinfo/microbe >>

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Re: [Microbe] Microbes mtg today?
by Paramvir Dehal 10 Sep '12

10 Sep '12

We should still have one. Gavin, can you collect agenda items and send out the reminder email? Pavel, John-Marc and Bill are also at this conference. On Mon, Sep 10, 2012 at 7:46 AM, Gavin Price <gaprice(a)lbl.gov> wrote: > Not sure if we're having one since paramvir is at a conference. > > -g > > > _______________________________________________ > Microbe mailing list > Microbe(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/microbe >

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Re: [Microbe] Microbes mtg today?
by Christopher Henry 10 Sep '12

10 Sep '12

Let's do a meeting. They're only every other week, and with the demo coming up fast, we can't afford to keep canceling them. Chris On Sep 10, 2012, at 9:46 AM, Gavin Price wrote: > Not sure if we're having one since paramvir is at a conference. > > -g > > _______________________________________________ > Microbe mailing list > Microbe(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/microbe

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Microbes mtg today?
by Gavin Price 10 Sep '12

10 Sep '12

Not sure if we're having one since paramvir is at a conference. -g

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Microbes report
by Christopher Henry 01 Sep '12

01 Sep '12

FYI: This is the report I send out. I tried to CC the list on the email, but the message got rejected. Hello all, So I've got a draft of the microbes report attached. Note, Paramvir has not approved this yet, and he should do so before it goes out to DOE. Comments and modifications welcome. Also, I didn't get feedback on all the future milestones yet, so I'm waiting for those to be filled in. I admit, I do have one more file to integrate... so some of them may be in there. Comments welcome. I'm not spending a huge amount of time editing section 4, because I'm sure there will be feedback on this. If you edit, I recommend editing the version on googledocs. It's in the microbes collection under KBase project, or you can just follow this link: https://docs.google.com/document/d/1bIWb1tJQ4no3jgWm2-99adTjFm5CILRqoL3Ix3o… In the process of doing this, I found some issues I will list here: 1.) The scheme for the CDM on the KBase website seems out of date: http://pubseed.theseed.org/ErdbDocWidget.cgi?xmlFileName=/home/parrello/Cdm… The microbial phenotype data isn't there. 2.) That URL above is absolutely awful, and in my opinion, that diagram is one of the most critical portions of our documentation. I suggest a simpler URL. 3.) At one point, we had summary stats on the website regarding information in our database (e.g. number of genomes etc). It's gone. It was good. Why was it removed? Best, Chris

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Microbes report
by Christopher Henry 01 Sep '12

01 Sep '12

Hello all, So I've got a draft of the microbes report attached. Note, Paramvir has not approved this yet, and he should do so before it goes out to DOE. Comments and modifications welcome. Also, I didn't get feedback on all the future milestones yet, so I'm waiting for those to be filled in. I admit, I do have one more file to integrate... so some of them may be in there. Comments welcome. I'm not spending a huge amount of time editing section 4, because I'm sure there will be feedback on this. If you edit, I recommend editing the version on googledocs. It's in the microbes collection under KBase project, or you can just follow this link: https://docs.google.com/document/d/1bIWb1tJQ4no3jgWm2-99adTjFm5CILRqoL3Ix3o… In the process of doing this, I found some issues I will list here: 1.) The scheme for the CDM on the KBase website seems out of date: http://pubseed.theseed.org/ErdbDocWidget.cgi?xmlFileName=/home/parrello/Cdm… The microbial phenotype data isn't there. 2.) That URL above is absolutely awful, and in my opinion, that diagram is one of the most critical portions of our documentation. I suggest a simpler URL. 3.) At one point, we had summary stats on the website regarding information in our database (e.g. number of genomes etc). It's gone. It was good. Why was it removed? Best, Chris

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