Here you go. Please be aware that these are still under discussion, so don't take them as final by any means! Also, not sure how the KBase hardening effort affects timetable. FY14 * Metagenomics binning service (reads to pan-genome bins) * Pan-genome metabolic modeling (joint with microbes) * Prototype ecosystem modeling service based on pan-genome models * Comparative analysis services aimed at large-scale comparisons and time series datasets * Prototype community engineering services (based on pan-genome models) * Community engineering services (Do first step, community engineering hypothesis service) Candidates for FY 15,16 * Provide tools for microbial community guild discovery and functional dissection. * Integration of tools and data for fungal metagenomic analysisExpand microbial community * Metabolic modeling to link environmental metabolite profiling (e.g. via stable isotope probing). * Provide tools to link microbial community evolutionary to ecological dynamics (e.g. horizontal transfer, strain/haplotype sweeps). * Increase phylogenomic support for functional subsystem discovery from environmentally-derived genomes. * Metadata integration * Ability to use high quality metagenomic contigs from e.g. Moleculo or metagenomic assembly Thanks, - Dylan On Thu, Sep 12, 2013 at 11:44 AM, Patrik D'haeseleer <[email protected]>wrote:
Would you guys mind sending me a copy of your proposed FY14 milestones?
Thanks!
Patrik
On Thu, Sep 12, 2013 at 11:28 AM, Dylan Chivian <[email protected]> wrote:
Hi Folker,
we're on for the call today at 12pm Pacific, right?
866-740-1260, pc 4958182
I'd like to discuss the FY14 and FY15 milestones I proposed and hear any that you have. Have you had a chance to think about it some more since yesterday?
Patrik, do you have one preferred email address? I never know which one to use for you ;)
Thanks, - Dylan