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Build failed in Jenkins: mpich-tarball #61
by help＠cels.anl.gov 29 Jan '18

29 Jan '18

See <https://jenkins-ci.cels.anl.gov/job/mpich-tarball/61/display/redirect> ------------------------------------------ Started by user Kenneth J. Raffenetti [EnvInject] - Loading node environment variables. Building remotely on grind.mcs.anl.gov (mcs) in workspace <https://jenkins-ci.cels.anl.gov/job/mpich-tarball/ws/> > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url git://git.mpich.org/mpich # timeout=10 Fetching upstream changes from git://git.mpich.org/mpich > git --version # timeout=10 > git fetch --tags --progress git://git.mpich.org/mpich +refs/heads/*:refs/remotes/origin/* > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/master^{commit} # timeout=10 Checking out Revision 7093f4dfbd5578882c26f4877eaca9c34419f6d6 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 7093f4dfbd5578882c26f4877eaca9c34419f6d6 > git rev-list 7093f4dfbd5578882c26f4877eaca9c34419f6d6 # timeout=10 [mpich-tarball] $ /bin/bash -xe /tmp/hudson8101105547496313486.sh + umask 0002 + git config core.abbrev 12 ++ uname -m + export PATH=/homes/MPI/software/tools/install/x86_64/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games + PATH=/homes/MPI/software/tools/install/x86_64/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games + BASE=/mcs/mpich/downloads/nightly + persist_tmp=/mcs/mpich/tmp + '[' -d /mcs/mpich/tmp ']' + create_snapshot http://git.mpich.org/mpich.git/blob_plain/master:/maint/release.pl git://git.mpich.org/mpich.git master master + script=http://git.mpich.org/mpich.git/blob_plain/master:/maint/release.pl + repo=git://git.mpich.org/mpich.git + branch=master + version=master + cd /mcs/mpich/tmp + /mcs/mpich/downloads/nightly/maint/release.pl --git-repo=git://git.mpich.org/mpich.git --branch=master --version=master --append-commit-id + chgrp mpi mpich-master-v3.3a3-128-g7093f4d.tar.gz + mv mpich-master-v3.3a3-128-g7093f4d.tar.gz /mcs/mpich/downloads/nightly/master/mpich + chgrp mpi hydra-master-v3.3a3-128-g7093f4d.tar.gz + mv hydra-master-v3.3a3-128-g7093f4d.tar.gz /mcs/mpich/downloads/nightly/master/hydra + cp -a release.log /mcs/mpich/tmp cp: ‘release.log’ and ‘/mcs/mpich/tmp/release.log’ are the same file Build step 'Execute shell' marked build as failure

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Argonne Spam Quarantine Notification
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13 Nov '17

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Argonne Spam Quarantine Notification
by Argonne Anti Spam Quarantine 29 Oct '16

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[mpich] MPICH primary repository branch, master, updated. v3.2-477-g4fcffbe
by noreply＠mpich.org 14 Oct '16

14 Oct '16

This is an automated email from the git hooks/post-receive script. It was generated because a ref change was pushed to the repository containing the project "MPICH primary repository". The branch, master has been updated via 4fcffbe695cb360db588b4c2e67a379ead5c9c9d (commit) from 245f4c1fdce2f93d98c1ed137733419648ad6e86 (commit) Those revisions listed above that are new to this repository have not appeared on any other notification email; so we list those revisions in full, below. - Log ----------------------------------------------------------------- http://git.mpich.org/mpich.git/commitdiff/4fcffbe695cb360db588b4c2e67a379ea… commit 4fcffbe695cb360db588b4c2e67a379ead5c9c9d Author: Ken Raffenetti <raffenet(a)mcs.anl.gov> Date: Wed Oct 12 16:17:24 2016 -0500 ROMIO: Fix header include order adio.h must be included first before any system headers so that config settings are taken into account. Fixes an issue with inconsistent types for off_t when using the fallback versions of pwrite/pread. Signed-off-by: Rob Latham <robl(a)mcs.anl.gov> diff --git a/src/mpi/romio/adio/common/ad_read.c b/src/mpi/romio/adio/common/ad_read.c index 19f2908..75b6c48 100644 --- a/src/mpi/romio/adio/common/ad_read.c +++ b/src/mpi/romio/adio/common/ad_read.c @@ -6,9 +6,9 @@ */ +#include "adio.h" #include <unistd.h> -#include "adio.h" #ifdef AGGREGATION_PROFILE #include "mpe.h" #endif diff --git a/src/mpi/romio/adio/common/ad_write.c b/src/mpi/romio/adio/common/ad_write.c index 34a31d9..d1c24ac 100644 --- a/src/mpi/romio/adio/common/ad_write.c +++ b/src/mpi/romio/adio/common/ad_write.c @@ -6,9 +6,9 @@ */ +#include "adio.h" #include <unistd.h> -#include "adio.h" #ifdef AGGREGATION_PROFILE #include "mpe.h" #endif ----------------------------------------------------------------------- Summary of changes: src/mpi/romio/adio/common/ad_read.c | 2 +- src/mpi/romio/adio/common/ad_write.c | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) hooks/post-receive -- MPICH primary repository

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[mpich] MPICH primary repository branch, master, updated. v3.2-476-g245f4c1
by noreply＠mpich.org 11 Oct '16

11 Oct '16

This is an automated email from the git hooks/post-receive script. It was generated because a ref change was pushed to the repository containing the project "MPICH primary repository". The branch, master has been updated via 245f4c1fdce2f93d98c1ed137733419648ad6e86 (commit) from 41d9cd4e3484bdd66b33e7f667483aeee92b3801 (commit) Those revisions listed above that are new to this repository have not appeared on any other notification email; so we list those revisions in full, below. - Log ----------------------------------------------------------------- http://git.mpich.org/mpich.git/commitdiff/245f4c1fdce2f93d98c1ed13773341964… commit 245f4c1fdce2f93d98c1ed137733419648ad6e86 Author: Rob Latham <robl(a)mcs.anl.gov> Date: Mon Oct 10 14:30:32 2016 -0500 move ASYNCHRONOUS attributes for all tests commit ac4e1f9ab27c was not thorough enough and only fixed one test. Other tests had same declaration: fix all. No Reviewer diff --git a/test/mpi/f08/subarray/test11.f90 b/test/mpi/f08/subarray/test11.f90 index a33fdc4..f484aa2 100644 --- a/test/mpi/f08/subarray/test11.f90 +++ b/test/mpi/f08/subarray/test11.f90 @@ -15,7 +15,7 @@ program main character (len=80) :: title='test 11: Isend/Irecv - 1d array - iar(10)' integer :: sint, i - integer, dimension(10) :: iar + integer, ASYNCHRONOUS, dimension(10) :: iar type(MPI_Request) request type(MPI_Status) status @@ -33,7 +33,6 @@ program main end do block - ASYNCHRONOUS :: iar call mpi_isend(iar, 10, MPI_INTEGER, 1, 567, MPI_COMM_WORLD, request, ierr); if (ierr .ne. MPI_SUCCESS) then @@ -52,7 +51,6 @@ program main else if (rank .eq. 1) then block - ASYNCHRONOUS :: iar call mpi_irecv(iar, 10, MPI_INTEGER, 0, 567, MPI_COMM_WORLD, request, ierr); if (ierr .ne. MPI_SUCCESS) then diff --git a/test/mpi/f08/subarray/test12.f90 b/test/mpi/f08/subarray/test12.f90 index 9ad3341..ee576bf 100644 --- a/test/mpi/f08/subarray/test12.f90 +++ b/test/mpi/f08/subarray/test12.f90 @@ -15,7 +15,8 @@ program main character (len=80) :: title='test 12: Isend/Irecv array slice - iar(2:7)' integer :: sint, i - integer, dimension(10) :: iar, iar_check + integer, dimension(10) :: iar_check + integer, ASYNCHRONOUS, dimension(10) :: iar type(MPI_Request) request type(MPI_Status) status @@ -33,7 +34,6 @@ program main end do block - ASYNCHRONOUS :: iar call mpi_isend(iar(2:7), 6, MPI_INTEGER, 1, 678, MPI_COMM_WORLD, request, ierr); if (ierr .ne. MPI_SUCCESS) then @@ -59,7 +59,6 @@ program main end do block - ASYNCHRONOUS :: iar call mpi_irecv(iar(2:7), 6, MPI_INTEGER, 0, 678, MPI_COMM_WORLD, request, ierr); if (ierr .ne. MPI_SUCCESS) then diff --git a/test/mpi/f08/subarray/test14.f90 b/test/mpi/f08/subarray/test14.f90 index d11bb10..2c6311b 100644 --- a/test/mpi/f08/subarray/test14.f90 +++ b/test/mpi/f08/subarray/test14.f90 @@ -15,7 +15,8 @@ program main character (len=80) :: title='test 14: Isend/Irecv 2d array column slice - iar_2d(:,2:6:2)' integer :: i, j - integer, dimension(9,9) :: iar_2d, iar_2dch + integer, dimension(9,9) :: iar_2dch + integer, ASYNCHRONOUS, dimension(9,9) :: iar_2d type(MPI_Status) status type(MPI_Request) request @@ -57,7 +58,6 @@ program main if (rank .eq. 0) then block - ASYNCHRONOUS :: iar_2d call mpi_isend(iar_2d(:,2:6:2), 27, MPI_INTEGER, 1, 123, MPI_COMM_WORLD, request, ierr); if (ierr .ne. MPI_SUCCESS) then @@ -76,7 +76,6 @@ program main else if (rank .eq. 1) then block - ASYNCHRONOUS :: iar_2d call mpi_irecv(iar_2d(:,2:6:2), 27, MPI_INTEGER, 0, 123, MPI_COMM_WORLD, request, ierr); if (ierr .ne. MPI_SUCCESS) then diff --git a/test/mpi/f08/subarray/test15.f90 b/test/mpi/f08/subarray/test15.f90 index 2e183bb..7c3d3ee 100644 --- a/test/mpi/f08/subarray/test15.f90 +++ b/test/mpi/f08/subarray/test15.f90 @@ -15,7 +15,8 @@ program main character (len=80) :: title='test 15: Isend/Irecv 2d array column slice - iar_2d(1:7:3,2:6:2)' integer :: i, j - integer, dimension(9,9) :: iar_2d, iar_2dch + integer, dimension(9,9) :: iar_2dch + integer, ASYNCHRONOUS, dimension(9,9) :: iar_2d type(MPI_Status) status type(MPI_Request) request @@ -56,7 +57,6 @@ program main if (rank .eq. 0) then block - ASYNCHRONOUS :: iar_2d call mpi_isend(iar_2d(1:7:3,2:6:2), 9, MPI_INTEGER, 1, 123, MPI_COMM_WORLD, request, ierr); if (ierr .ne. MPI_SUCCESS) then if (verbose) print *,"PE ",rank,": ",name,": mpi_isend exited in error (",ierr,")" @@ -72,7 +72,6 @@ program main end block else if (rank .eq. 1) then block - ASYNCHRONOUS :: iar_2d call mpi_irecv(iar_2d(1:7:3,2:6:2), 9, MPI_INTEGER, 0, 123, MPI_COMM_WORLD, request, ierr); if (ierr .ne. MPI_SUCCESS) then ----------------------------------------------------------------------- Summary of changes: test/mpi/f08/subarray/test11.f90 | 4 +--- test/mpi/f08/subarray/test12.f90 | 5 ++--- test/mpi/f08/subarray/test14.f90 | 5 ++--- test/mpi/f08/subarray/test15.f90 | 5 ++--- 4 files changed, 7 insertions(+), 12 deletions(-) hooks/post-receive -- MPICH primary repository

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[mpich] MPICH primary repository branch, master, updated. v3.2-475-g41d9cd4
by noreply＠mpich.org 10 Oct '16

10 Oct '16

This is an automated email from the git hooks/post-receive script. It was generated because a ref change was pushed to the repository containing the project "MPICH primary repository". The branch, master has been updated via 41d9cd4e3484bdd66b33e7f667483aeee92b3801 (commit) via 32cbcba941243b80afcfc69df6efcbbe801e5646 (commit) from ed612b0a744661e974b0e56c3d121a99627543da (commit) Those revisions listed above that are new to this repository have not appeared on any other notification email; so we list those revisions in full, below. - Log ----------------------------------------------------------------- http://git.mpich.org/mpich.git/commitdiff/41d9cd4e3484bdd66b33e7f667483aeee… commit 41d9cd4e3484bdd66b33e7f667483aeee92b3801 Author: Yanfei Guo <yguo(a)anl.gov> Date: Thu Sep 29 17:07:10 2016 -0500 autoconf: fix strict build on Solaris. 1. GCC on solaris use C89 as default which does not support POSIX 2001. The support for POSIX 2001 must be checked after checking the support of C99. 2. AC_CHECK_FUNCS has false positive when checking gethrtime on Solaris with strict configuration. Use AC_CHECK_DECL to double check the availability of gethrtime. No reviewer. diff --git a/confdb/aclocal_cc.m4 b/confdb/aclocal_cc.m4 index fd7152b..23d7365 100644 --- a/confdb/aclocal_cc.m4 +++ b/confdb/aclocal_cc.m4 @@ -626,13 +626,6 @@ if test "$enable_strict_done" != "yes" ; then pac_cc_strict_flags="-O2" fi pac_cc_strict_flags="$pac_cc_strict_flags $pac_common_strict_flags" - case "$enable_posix" in - no) : ;; - 1995) PAC_APPEND_FLAG([-D_POSIX_C_SOURCE=199506L],[pac_cc_strict_flags]) ;; - 2001) PAC_APPEND_FLAG([-D_POSIX_C_SOURCE=200112L],[pac_cc_strict_flags]) ;; - 2008) PAC_APPEND_FLAG([-D_POSIX_C_SOURCE=200809L],[pac_cc_strict_flags]) ;; - *) AC_MSG_ERROR([internal error, unexpected POSIX version: '$enable_posix']) ;; - esac # We only allow one of strict-C99 or strict-C89 to be # enabled. If C99 is enabled, we automatically disable C89. if test "${enable_c99}" = "yes" ; then @@ -645,6 +638,16 @@ if test "$enable_strict_done" != "yes" ; then PAC_APPEND_FLAG([-std=c89],[pac_cc_strict_flags]) PAC_APPEND_FLAG([-Wdeclaration-after-statement],[pac_cc_strict_flags]) fi + # POSIX 2001 should be used with C99. But the default standard for some + # compilers are not C99. We must test the support of POSIX 2001 after + # testing C99. + case "$enable_posix" in + no) : ;; + 1995) PAC_APPEND_FLAG([-D_POSIX_C_SOURCE=199506L],[pac_cc_strict_flags]) ;; + 2001) PAC_APPEND_FLAG([-D_POSIX_C_SOURCE=200112L],[pac_cc_strict_flags]) ;; + 2008) PAC_APPEND_FLAG([-D_POSIX_C_SOURCE=200809L],[pac_cc_strict_flags]) ;; + *) AC_MSG_ERROR([internal error, unexpected POSIX version: '$enable_posix']) ;; + esac fi # See if the above options work with the compiler diff --git a/src/mpl/configure.ac b/src/mpl/configure.ac index cf34469..9438e03 100644 --- a/src/mpl/configure.ac +++ b/src/mpl/configure.ac @@ -273,8 +273,14 @@ pac_cv_hrtime_works=yes,pac_cv_hrtime_works=no)]) # hrtime_t to int64_t works, and even more ambitious # would check whether long or long long was 64 bits (or even # better, the sizeof hrtime_t). + + # AC_CHECK_FUNCS has false positive when checking whether gethrtime is + # available on Solaris with strict configuration. We must use + # AC_CHECK_DECL to confirm it. + AC_CHECK_DECL(gethrtime) fi if test "$ac_cv_func_gethrtime" = "yes" -a \ + "$ac_cv_has_decl_gethrtime" = "yes" -a \ "$pac_cv_hrtime_works" = "yes" ; then timer_type=gethrtime elif test "$ac_cv_func_clock_gettime" = "yes" -a \ http://git.mpich.org/mpich.git/commitdiff/32cbcba941243b80afcfc69df6efcbbe8… commit 32cbcba941243b80afcfc69df6efcbbe801e5646 Author: Rob Latham <robl(a)mcs.anl.gov> Date: Tue Sep 27 14:15:32 2016 -0500 A more standard check for large file support Remove the explicit setting of _LARGEFILE64_SOURCE and friends. Let autoconf's AC_SYS_LARGEFILE do it for us. (solaris strict headers do not like the LARGEFILE defines) Signed-off-by: Yanfei Guo <yguo(a)anl.gov> diff --git a/src/mpi/romio/configure.ac b/src/mpi/romio/configure.ac index eaec4f2..e9539b2 100644 --- a/src/mpi/romio/configure.ac +++ b/src/mpi/romio/configure.ac @@ -1306,35 +1306,11 @@ AC_CHECK_TYPE([blksize_t],[],[AC_DEFINE_UNQUOTED([blksize_t],[__blksize_t],[Prov #endif]] ) # -# Check for large file support. Make sure that we can use the off64_t -# type (in some cases, it is an array, and the ROMIO code isn't prepared for -# that). +# in 2004, solairs defined off_t as a union. Today (2016) that is not the case +# and we can simplify this check # -AC_CHECK_HEADERS(unistd.h) -if test "$ac_cv_header_unistd_h" = "yes" ; then - AC_CACHE_CHECK([for large file defines],ac_cv_has_large_file_defines,[ - AC_TRY_COMPILE([ -#include <unistd.h> - ], [ -#ifndef _LFS64_LARGEFILE -#error no largefile defines -#endif - ],ac_cv_has_large_file_defines=yes,ac_cv_has_large_file_defines=no)]) - if test "$ac_cv_has_large_file_defines" = "yes" ; then - # See if we can use them - AC_CACHE_CHECK([whether off64_t is an scalar type],ac_cv_off64_t_scalar,[ - AC_TRY_COMPILE([ -#define _LARGEFILE64_SOURCE -#define _FILE_OFFSET_BITS 64 -#include <sys/types.h> -#include <unistd.h> -],[off64_t a = 3;],ac_cv_off64_t_scalar=yes,ac_cv_off64_t_scalar=no)]) - if test "$ac_cv_off64_t_scalar" = "yes" ; then - CFLAGS="${CFLAGS} -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64" - fi - fi -fi +AC_SYS_LARGEFILE() # pread and pwrite are useful to ROMIO: if implemented well, they help us avoid # an extra system call. But --enable-strict or CFLAGS="--std=c99" does not @@ -1631,20 +1607,6 @@ else F77MPIOINC="include 'mpiof.h'" fi -AC_CHECK_HEADERS(unistd.h, - AC_MSG_CHECKING([for large file defines]) - AC_TRY_COMPILE([ - #include <unistd.h> - ], [ - #ifndef _LFS64_LARGEFILE - #error no largefile defines - #endif - ], - CFLAGS="${CFLAGS} -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64" - AC_MSG_RESULT(yes), - AC_MSG_RESULT(none) ) - ) - echo "setting SYSDEP_INC to $SYSDEP_INC" AC_SUBST(SYSDEP_INC) diff --git a/test/mpi/io/simple_collective.c b/test/mpi/io/simple_collective.c index 54e32fa..5bf5512 100644 --- a/test/mpi/io/simple_collective.c +++ b/test/mpi/io/simple_collective.c @@ -19,8 +19,6 @@ * I am surprised src/mpi/romio/test/create_excl.c did not uncover the bug */ -#define _LARGEFILE64_SOURCE - #include <assert.h> #include <stdio.h> #include <stdlib.h> ----------------------------------------------------------------------- Summary of changes: confdb/aclocal_cc.m4 | 17 ++++++++------ src/mpi/romio/configure.ac | 44 ++------------------------------------ src/mpl/configure.ac | 6 +++++ test/mpi/io/simple_collective.c | 2 - 4 files changed, 19 insertions(+), 50 deletions(-) hooks/post-receive -- MPICH primary repository

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