January 2015 - Admins - mailman3.cels.anl.gov

[JLSE-Admins] [Fail2Ban] SSH: banned 115.231.222.60 on
by Fail2Ban 16 Jan '15

16 Jan '15

The IP 115.231.222.60 has just been banned by Fail2Ban after 18 attempts against SSH. Latest lines containing IP:115.231.222.60 in /var/log/syslog/sshd.log Jan 17 03:45:19 ftlogin1 sshd[13033]: Received disconnect from 115.231.222.60: 11: Bye Bye Jan 17 03:45:21 ftlogin1 sshd[13041]: error: PAM: Authentication failure for root from 115.231.222.60 Jan 17 03:45:21 ftlogin1 sshd[13044]: Received disconnect from 115.231.222.60: 11: Bye Bye Jan 17 03:45:22 ftlogin1 sshd[13052]: error: PAM: Authentication failure for root from 115.231.222.60 Jan 17 03:45:22 ftlogin1 sshd[13055]: Received disconnect from 115.231.222.60: 11: Bye Bye Jan 17 03:45:23 ftlogin1 sshd[13061]: error: PAM: Authentication failure for root from 115.231.222.60 Jan 17 03:45:23 ftlogin1 sshd[13065]: Received disconnect from 115.231.222.60: 11: Bye Bye Jan 17 03:45:24 ftlogin1 sshd[13071]: error: PAM: Authentication failure for root from 115.231.222.60 Jan 17 03:45:25 ftlogin1 sshd[13075]: Received disconnect from 115.231.222.60: 11: Bye Bye Jan 17 03:45:26 ftlogin1 sshd[13082]: error: PAM: Authentication failure for root from 115.231.222.60 - Fail2ban on

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[JLSE-Admins] [Fail2Ban] SSH: banned 115.231.222.23 on
by Fail2Ban 16 Jan '15

16 Jan '15

The IP 115.231.222.23 has just been banned by Fail2Ban after 18 attempts against SSH. Latest lines containing IP:115.231.222.23 in /var/log/syslog/sshd.log Jan 17 03:45:19 ftlogin1 sshd[13034]: Received disconnect from 115.231.222.23: 11: Bye Bye Jan 17 03:45:20 ftlogin1 sshd[13036]: error: PAM: Authentication failure for root from 115.231.222.23 Jan 17 03:45:21 ftlogin1 sshd[13040]: Received disconnect from 115.231.222.23: 11: Bye Bye Jan 17 03:45:22 ftlogin1 sshd[13046]: error: PAM: Authentication failure for root from 115.231.222.23 Jan 17 03:45:23 ftlogin1 sshd[13051]: Received disconnect from 115.231.222.23: 11: Bye Bye Jan 17 03:45:23 ftlogin1 sshd[13056]: error: PAM: Authentication failure for root from 115.231.222.23 Jan 17 03:45:23 ftlogin1 sshd[13060]: Received disconnect from 115.231.222.23: 11: Bye Bye Jan 17 03:45:24 ftlogin1 sshd[13066]: error: PAM: Authentication failure for root from 115.231.222.23 Jan 17 03:45:24 ftlogin1 sshd[13070]: Received disconnect from 115.231.222.23: 11: Bye Bye Jan 17 03:45:25 ftlogin1 sshd[13076]: error: PAM: Authentication failure for root from 115.231.222.23 - Fail2ban on

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[JLSE-Admins] [Fail2Ban] SSH: banned 115.231.222.60 on
by Fail2Ban 16 Jan '15

16 Jan '15

The IP 115.231.222.60 has just been banned by Fail2Ban after 18 attempts against SSH. Latest lines containing IP:115.231.222.60 in /var/log/syslog/sshd.log Jan 17 03:45:18 ftlogin2 sshd[26546]: Received disconnect from 115.231.222.60: 11: Bye Bye Jan 17 03:45:19 ftlogin2 sshd[26547]: error: PAM: Authentication failure for root from 115.231.222.60 Jan 17 03:45:19 ftlogin2 sshd[26551]: Received disconnect from 115.231.222.60: 11: Bye Bye Jan 17 03:45:21 ftlogin2 sshd[26553]: error: PAM: Authentication failure for root from 115.231.222.60 Jan 17 03:45:21 ftlogin2 sshd[26556]: Received disconnect from 115.231.222.60: 11: Bye Bye Jan 17 03:45:21 ftlogin2 sshd[26558]: error: PAM: Authentication failure for root from 115.231.222.60 Jan 17 03:45:22 ftlogin2 sshd[26561]: Received disconnect from 115.231.222.60: 11: Bye Bye Jan 17 03:45:23 ftlogin2 sshd[26562]: error: PAM: Authentication failure for root from 115.231.222.60 Jan 17 03:45:23 ftlogin2 sshd[26566]: Received disconnect from 115.231.222.60: 11: Bye Bye Jan 17 03:45:24 ftlogin2 sshd[26568]: error: PAM: Authentication failure for root from 115.231.222.60 - Fail2ban on

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Re: [JLSE-Admins] JLSE MIC home directory
by John Tramm 16 Jan '15

16 Jan '15

Ben, That sounds like a good plan. Thanks for the help! -John On Thu, Jan 15, 2015 at 3:05 PM, Allen, Benjamin S. <bsallen(a)alcf.anl.gov> wrote: > Hi John, > > Assuming /home/jtramm/SimpleMOC-kernel/src/cpu/SimpleMOC-kernel is the > actual app you're trying to profile, I can start with the packages > referenced in the "Cannot locate debugging symbols" below. > > Ben > > > On Jan 14, 2015, at 8:15 PM, John Tramm <jtramm(a)mcs.anl.gov> wrote: > > > > Hey Ben, > > > > Thanks for doing this! I would ideally like all of the packages > installed, as I'm not sure which ones I need and which I don't. My app > doesn't have any outside dependencies, and it really just uses pretty > normal C and OpenMP includes, so I'm guessing if it has issues with just > that I will probably need them all (unless you have reason to believe > otherwise). > > > > Thanks again! > > > > -John > > > > On Wed, Jan 14, 2015 at 6:58 PM, Allen, Benjamin S. < > bsallen(a)alcf.anl.gov> wrote: > > Hi John, > > > > Yea I can do this. I should be able to get to it sometime this week, at > worst early next week. Do you want all of the dbg packages installed, or do > you have a specific list you want? > > > > Ben > > > > > On Jan 14, 2015, at 11:21 AM, John Tramm <jtramm(a)mcs.anl.gov> wrote: > > > > > > Ben, > > > > > > I tried running through the CLI mode, and had the same problems. It > would be really great if you could install the required packages, as Vtune > offers a lot in terms of performance analysis that can't be done any other > way on the MIC. I understand the desire to keep the install bloat to a > minimum, but Vtune is pretty essential to working with the MIC. I'm really > in the dark as to what's going on with my application without being able to > use Vtune, as even simple things like grpof don't work on there. > > > > > > Here's what I'm getting: > > > > > > jtramm@lucie:~/SimpleMOC-kernel/src/cpu$ export > INTEL_LICENSE_FILE=28518@ftsn2 > > > jtramm@lucie:~/SimpleMOC-kernel/src/cpu$ source > /soft/compilers/intel/vtune_amplifier_xe/amplxe-vars.sh > > > Copyright (C) 2009-2014 Intel Corporation. All rights reserved. > > > Intel(R) VTune(TM) Amplifier XE 2015 (build 380310) > > > jtramm@lucie:~/SimpleMOC-kernel/src/cpu$ amplxe-cl -collect > advanced-hotspots -target-system=mic-native:0 -- > /home/jtramm/SimpleMOC-kernel/src/cpu/SimpleMOC-kernel > > > amplxe: Using target: mic-native:0 > > > amplxe: Collection started. To stop the collection, either press > CTRL-C or enter from another console window: amplxe-cl -r > /home/jtramm/SimpleMOC-kernel/src/cpu/r001ah -command stop. > > > amplxe: Collection stopped. > > > amplxe: Using result path > `/home/jtramm/SimpleMOC-kernel/src/cpu/r001ah' > > > amplxe: Executing actions 16 % Resolving module symbols > > > amplxe: Locating file `/usr/lib/debug/lib/modules/2.6.38.8+mpss3.4.2/vmlinux' > on the remote system > > > amplxe: Locating file `/boot/vmlinuz-2.6.38.8+mpss3.4.2' on the remote > system > > > amplxe: Executing actions 16 % Resolving information for ` > libc-2.14.90.so' > > > amplxe: Warning: Cannot locate debugging symbols for file > `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/ > libc-2.14.90.so/45397051311f95599054edd6ac8d616d/libc-2.14.90.so'. > > > amplxe: Locating file `vmlinux-2.6.38.8+mpss3.4.2' on the remote system > > > amplxe: Locating file `/boot/vmlinuz' on the remote system > > > amplxe: Executing actions 16 % Resolving information for ` > ld-2.14.90.so' > > > amplxe: Warning: Cannot locate debugging symbols for file > `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/ > ld-2.14.90.so/5152c3600c8161c8d9c8d152b5ad591e/ld-2.14.90.so'. > > > amplxe: Executing actions 17 % Resolving information for ` > ld-2.14.90.so' > > > amplxe: Locating file `intel_micveth.ko' on the remote system > > > amplxe: Warning: Cannot locate file `/usr/lib/debug/lib/modules/ > 2.6.38.8+mpss3.4.2/vmlinux'. > > > amplxe: Executing actions 18 % Resolving information for dangling > locations > > > amplxe: Warning: Cannot locate file `intel_micveth.ko'. > > > amplxe: Executing actions 18 % Resolving information for > `libgnutls.so.26.22.0' > > > amplxe: Warning: Cannot locate debugging symbols for file > `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libgnutls.so.26.22.0/9d99eae1cacffaa3f20e5a2312f69282/libgnutls.so.26.22.0'. > > > amplxe: Executing actions 18 % Resolving information for > `libgcrypt.so.11.7.0' > > > amplxe: Warning: Cannot locate debugging symbols for file > `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libgcrypt.so.11.7.0/587958b33eac1b807e852f640262da62/libgcrypt.so.11.7.0'. > > > amplxe: Executing actions 19 % Resolving information for ` > libnss_ldap-2.12.2.so > > > amplxe: Warning: Cannot locate debugging symbols for file > `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/ > libnss_ldap-2.12.2.so/0d6aa4bfd689f60ef5b0b94edf8d3ed1/libnss_ldap-2.12.2.so > '. > > > amplxe: Executing actions 19 % Resolving information for `sshd' > > > amplxe: Warning: Cannot locate debugging symbols for file > `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/sshd/4354ab1d5cd53de91c85d8abe4000899/sshd'. > > > amplxe: Executing actions 19 % Resolving information for > `libcrypto.so.1.0.0' > > > amplxe: Warning: Cannot locate debugging symbols for file > `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libcrypto.so.1.0.0/2fc14f872d9ca6c49501676046029554/libcrypto.so.1.0.0'. > > > amplxe: Executing actions 20 % Resolving information for > `libtasn1.so.3.1.13' > > > amplxe: Warning: Cannot locate debugging symbols for file > `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libtasn1.so.3.1.13/0ba82903ca399644d103aed874e3ba7c/libtasn1.so.3.1.13'. > > > amplxe: Executing actions 50 % Generating a report > > > > > > General Exploration Metrics > > > --------------------------- > > > Parameter r001ah > > > -------------------- --------- > > > CPU Time 0.300 > > > Clockticks 372000558 > > > Instructions Retired 95333238 > > > CPI Rate 3.902 > > > Cache Usage 0.0 > > > Vectorization Usage 0.0 > > > TLB Usage 0.0 > > > > > > Collection and Platform Info > > > ---------------------------- > > > Parameter r001ah > > > ------------------------ > ----------------------------------------------------------------- > > > Application Command Line > /home/jtramm/SimpleMOC-kernel/src/cpu/SimpleMOC-kernel > > > User Name jtramm > > > Operating System Intel MIC Platform Software Stack (Built by > Poky 7.0) 3.4.2 \n \l > > > Computer Name lucie-mic0.ftm.alcf.anl.gov > > > Result Size 2272316 > > > > > > CPU > > > --- > > > Parameter r001ah > > > ----------------- -------------------------- > > > Name Intel Xeon Phi coprocessor > > > Frequency 1238000000 > > > Logical CPU Count 244 > > > > > > Summary > > > ------- > > > Elapsed Time: 0.392 > > > CPU Time: 0.300 > > > Average CPU Usage: 0.548 > > > CPI Rate: 3.902 > > > > > > Event summary > > > ------------- > > > Hardware Event Type Hardware Event Count:Self Hardware Event > Sample Count:Self Events Per Sample > > > --------------------- ------------------------- > -------------------------------- ----------------- > > > CPU_CLK_UNHALTED 372000558 > 186 2000003 > > > INSTRUCTIONS_EXECUTED 95333238 > 77 1238094 > > > amplxe: Executing actions 100 % done > > > > > > > > > Thanks for your help! > > > > > > -John > > > > > > On Wed, Jan 7, 2015 at 2:44 PM, Allen, Benjamin S. < > bsallen(a)alcf.anl.gov> wrote: > > > I have little to no experience with VTune. However looking at the > screen cap the kernel modules referenced can be found on the MIC at: > > > > > > /lib/modules/2.6.38.8+mpss3.4.2/extra/vnet/intel_micveth.ko > > > /sep3.15/sep3_15-k1om-2.6.38.8+mpss3.4.2smp.ko > > > > > > If I'd have to guess, the debugging symbols are missing because I > don't have any of the k1om debug packages installed on the MICs themselves, > i.e. "dbg" RPMs from > http://registrationcenter.intel.com/irc_nas/5017/mpss-3.4.2-k1om.tar. I > try to keep the packages installed directly on the MICs to a minimum as > they appear to sit in a RAM disk. > > > > > > Perhaps try running with CLI version of Vtune, amplxe-cl to see if it > outputs anymore useful information? > > > > > > Example: > > > > > > export INTEL_LICENSE_FILE=28518@ftsn2 > > > source /soft/compilers/intel/vtune_amplifier_xe/amplxe-vars.sh > > > amplxe-cl -collect advanced-hotspots -target-system=mic-native ls -CF > /usr/bin > > > > > > Ben > > > > > > > > > > On Jan 7, 2015, at 1:07 PM, John Tramm <jtramm(a)mcs.anl.gov> wrote: > > > > > > > > Ben, > > > > > > > > Thanks for re-deploying - it definitely seems to have helped. I'm > now able to run the vtune GUI. > > > > > > > > However, now I'm running into a new issue. When I run vtune from the > host, in order to analyze an app run on the device, it doesn't appear to be > launching successfully (i.e., nothing is output to the terminal, and the > resulting vtune analysis says the code only ran for a fraction of a second, > when it should be at least several seconds on the MIC). > > > > > > > > It also outputs this set of errors when running my project: > > > > > > > > <Screen Shot 2015-01-07 at 12.56.50 PM.png> > > > > > > > > > > > > Can you think of anything that might cause this? > > > > > > > > Thanks again so much for your help! > > > > > > > > -John Tramm > > > > > > > > > > > > On Wed, Jan 7, 2015 at 12:47 PM, Allen, Benjamin S. < > bsallen(a)alcf.anl.gov> wrote: > > > > Hi John, > > > > > > > > The RHEL6 image was missing libXxf86vm, I've re-deployed the three > servers (Ruth, Lucie, Jenny) with libXxf86vm installed. I've also updated > "sep", which is the sampling kernel module for both the MIC and the host. I > doesn't look like Intel included the Power sampling kernel module with > Vtune Amplifier XE 2015 however, ie. > /soft/compilers/intel/vtune_amplifier_xe_2013/powerdk/src. > > > > > > > > Let me know if you run into any more problems. > > > > > > > > Ben > > > > > > > > > On Jan 6, 2015, at 2:50 PM, John Tramm <jtramm(a)mcs.anl.gov> wrote: > > > > > > > > > > Ben, > > > > > > > > > > I'm trying to use vtune to analyze performance of my application > on the mic. I can't seem to get Vtune to run on the host node (either lucie > or jenny). I keep getting the following error: > > > > > > > > > > amplxe-gui: error while loading shared libraries: libXxf86vm.so.1: > cannot open shared object file: No such file or directory > > > > > > > > > > There seems to be a shared library file missing somewhere that I > can't seem to find. Perhaps I need to add something to my linker path? > > > > > > > > > > Thanks for your help! > > > > > > > > > > -John > > > > > > > > > > > > > > > > > > > > On Tue, Jan 6, 2015 at 10:35 AM, John Tramm <jtramm(a)mcs.anl.gov> > wrote: > > > > > Allen, > > > > > > > > > > Yes, everything seems to be working great now. Thanks! > > > > > > > > > > -John > > > > > > > > > > On Mon, Jan 5, 2015 at 2:26 PM, Allen, Benjamin S. < > bsallen(a)alcf.anl.gov> wrote: > > > > > Hi John, > > > > > > > > > > This should be fixed. Let me know if you run into further issues. > > > > > > > > > > Ben > > > > > > > > > > > On Jan 5, 2015, at 11:53 AM, John Tramm <jtramm(a)mcs.anl.gov> > wrote: > > > > > > > > > > > > Greetings, > > > > > > > > > > > > I'm trying to use the JLSE MIC nodes, but I can't seem to get my > home directory to show up on mic0 itself. It is available on the host, but > it doesn't seem to be able to connect on the MIC. I recall a few months ago > I was able to access my home dir on the mic. > > > > > > > > > > > > Do I need to run anything to get access to the home dir? > > > > > > > > > > > > Thanks! > > > > > > > > > > > > -John Tramm > > > > > > _______________________________________________ > > > > > > Admins mailing list > > > > > > Admins(a)lists.jlse.anl.gov > > > > > > https://lists.jlse.anl.gov/mailman/listinfo/admins > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > >

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Re: [JLSE-Admins] JLSE MIC home directory
by Allen, Benjamin S. 15 Jan '15

15 Jan '15

Hi John, Assuming /home/jtramm/SimpleMOC-kernel/src/cpu/SimpleMOC-kernel is the actual app you're trying to profile, I can start with the packages referenced in the "Cannot locate debugging symbols" below. Ben > On Jan 14, 2015, at 8:15 PM, John Tramm <jtramm(a)mcs.anl.gov> wrote: > > Hey Ben, > > Thanks for doing this! I would ideally like all of the packages installed, as I'm not sure which ones I need and which I don't. My app doesn't have any outside dependencies, and it really just uses pretty normal C and OpenMP includes, so I'm guessing if it has issues with just that I will probably need them all (unless you have reason to believe otherwise). > > Thanks again! > > -John > > On Wed, Jan 14, 2015 at 6:58 PM, Allen, Benjamin S. <bsallen(a)alcf.anl.gov> wrote: > Hi John, > > Yea I can do this. I should be able to get to it sometime this week, at worst early next week. Do you want all of the dbg packages installed, or do you have a specific list you want? > > Ben > > > On Jan 14, 2015, at 11:21 AM, John Tramm <jtramm(a)mcs.anl.gov> wrote: > > > > Ben, > > > > I tried running through the CLI mode, and had the same problems. It would be really great if you could install the required packages, as Vtune offers a lot in terms of performance analysis that can't be done any other way on the MIC. I understand the desire to keep the install bloat to a minimum, but Vtune is pretty essential to working with the MIC. I'm really in the dark as to what's going on with my application without being able to use Vtune, as even simple things like grpof don't work on there. > > > > Here's what I'm getting: > > > > jtramm@lucie:~/SimpleMOC-kernel/src/cpu$ export INTEL_LICENSE_FILE=28518@ftsn2 > > jtramm@lucie:~/SimpleMOC-kernel/src/cpu$ source /soft/compilers/intel/vtune_amplifier_xe/amplxe-vars.sh > > Copyright (C) 2009-2014 Intel Corporation. All rights reserved. > > Intel(R) VTune(TM) Amplifier XE 2015 (build 380310) > > jtramm@lucie:~/SimpleMOC-kernel/src/cpu$ amplxe-cl -collect advanced-hotspots -target-system=mic-native:0 -- /home/jtramm/SimpleMOC-kernel/src/cpu/SimpleMOC-kernel > > amplxe: Using target: mic-native:0 > > amplxe: Collection started. To stop the collection, either press CTRL-C or enter from another console window: amplxe-cl -r /home/jtramm/SimpleMOC-kernel/src/cpu/r001ah -command stop. > > amplxe: Collection stopped. > > amplxe: Using result path `/home/jtramm/SimpleMOC-kernel/src/cpu/r001ah' > > amplxe: Executing actions 16 % Resolving module symbols > > amplxe: Locating file `/usr/lib/debug/lib/modules/2.6.38.8+mpss3.4.2/vmlinux' on the remote system > > amplxe: Locating file `/boot/vmlinuz-2.6.38.8+mpss3.4.2' on the remote system > > amplxe: Executing actions 16 % Resolving information for `libc-2.14.90.so' > > amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libc-2.14.90.so/45397051311f95599054edd6ac8d616d/libc-2.14.90.so'. > > amplxe: Locating file `vmlinux-2.6.38.8+mpss3.4.2' on the remote system > > amplxe: Locating file `/boot/vmlinuz' on the remote system > > amplxe: Executing actions 16 % Resolving information for `ld-2.14.90.so' > > amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/ld-2.14.90.so/5152c3600c8161c8d9c8d152b5ad591e/ld-2.14.90.so'. > > amplxe: Executing actions 17 % Resolving information for `ld-2.14.90.so' > > amplxe: Locating file `intel_micveth.ko' on the remote system > > amplxe: Warning: Cannot locate file `/usr/lib/debug/lib/modules/2.6.38.8+mpss3.4.2/vmlinux'. > > amplxe: Executing actions 18 % Resolving information for dangling locations > > amplxe: Warning: Cannot locate file `intel_micveth.ko'. > > amplxe: Executing actions 18 % Resolving information for `libgnutls.so.26.22.0' > > amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libgnutls.so.26.22.0/9d99eae1cacffaa3f20e5a2312f69282/libgnutls.so.26.22.0'. > > amplxe: Executing actions 18 % Resolving information for `libgcrypt.so.11.7.0' > > amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libgcrypt.so.11.7.0/587958b33eac1b807e852f640262da62/libgcrypt.so.11.7.0'. > > amplxe: Executing actions 19 % Resolving information for `libnss_ldap-2.12.2.so > > amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libnss_ldap-2.12.2.so/0d6aa4bfd689f60ef5b0b94edf8d3ed1/libnss_ldap-2.12.2.so'. > > amplxe: Executing actions 19 % Resolving information for `sshd' > > amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/sshd/4354ab1d5cd53de91c85d8abe4000899/sshd'. > > amplxe: Executing actions 19 % Resolving information for `libcrypto.so.1.0.0' > > amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libcrypto.so.1.0.0/2fc14f872d9ca6c49501676046029554/libcrypto.so.1.0.0'. > > amplxe: Executing actions 20 % Resolving information for `libtasn1.so.3.1.13' > > amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libtasn1.so.3.1.13/0ba82903ca399644d103aed874e3ba7c/libtasn1.so.3.1.13'. > > amplxe: Executing actions 50 % Generating a report > > > > General Exploration Metrics > > --------------------------- > > Parameter r001ah > > -------------------- --------- > > CPU Time 0.300 > > Clockticks 372000558 > > Instructions Retired 95333238 > > CPI Rate 3.902 > > Cache Usage 0.0 > > Vectorization Usage 0.0 > > TLB Usage 0.0 > > > > Collection and Platform Info > > ---------------------------- > > Parameter r001ah > > ------------------------ ----------------------------------------------------------------- > > Application Command Line /home/jtramm/SimpleMOC-kernel/src/cpu/SimpleMOC-kernel > > User Name jtramm > > Operating System Intel MIC Platform Software Stack (Built by Poky 7.0) 3.4.2 \n \l > > Computer Name lucie-mic0.ftm.alcf.anl.gov > > Result Size 2272316 > > > > CPU > > --- > > Parameter r001ah > > ----------------- -------------------------- > > Name Intel Xeon Phi coprocessor > > Frequency 1238000000 > > Logical CPU Count 244 > > > > Summary > > ------- > > Elapsed Time: 0.392 > > CPU Time: 0.300 > > Average CPU Usage: 0.548 > > CPI Rate: 3.902 > > > > Event summary > > ------------- > > Hardware Event Type Hardware Event Count:Self Hardware Event Sample Count:Self Events Per Sample > > --------------------- ------------------------- -------------------------------- ----------------- > > CPU_CLK_UNHALTED 372000558 186 2000003 > > INSTRUCTIONS_EXECUTED 95333238 77 1238094 > > amplxe: Executing actions 100 % done > > > > > > Thanks for your help! > > > > -John > > > > On Wed, Jan 7, 2015 at 2:44 PM, Allen, Benjamin S. <bsallen(a)alcf.anl.gov> wrote: > > I have little to no experience with VTune. However looking at the screen cap the kernel modules referenced can be found on the MIC at: > > > > /lib/modules/2.6.38.8+mpss3.4.2/extra/vnet/intel_micveth.ko > > /sep3.15/sep3_15-k1om-2.6.38.8+mpss3.4.2smp.ko > > > > If I'd have to guess, the debugging symbols are missing because I don't have any of the k1om debug packages installed on the MICs themselves, i.e. "dbg" RPMs from http://registrationcenter.intel.com/irc_nas/5017/mpss-3.4.2-k1om.tar. I try to keep the packages installed directly on the MICs to a minimum as they appear to sit in a RAM disk. > > > > Perhaps try running with CLI version of Vtune, amplxe-cl to see if it outputs anymore useful information? > > > > Example: > > > > export INTEL_LICENSE_FILE=28518@ftsn2 > > source /soft/compilers/intel/vtune_amplifier_xe/amplxe-vars.sh > > amplxe-cl -collect advanced-hotspots -target-system=mic-native ls -CF /usr/bin > > > > Ben > > > > > > > On Jan 7, 2015, at 1:07 PM, John Tramm <jtramm(a)mcs.anl.gov> wrote: > > > > > > Ben, > > > > > > Thanks for re-deploying - it definitely seems to have helped. I'm now able to run the vtune GUI. > > > > > > However, now I'm running into a new issue. When I run vtune from the host, in order to analyze an app run on the device, it doesn't appear to be launching successfully (i.e., nothing is output to the terminal, and the resulting vtune analysis says the code only ran for a fraction of a second, when it should be at least several seconds on the MIC). > > > > > > It also outputs this set of errors when running my project: > > > > > > <Screen Shot 2015-01-07 at 12.56.50 PM.png> > > > > > > > > > Can you think of anything that might cause this? > > > > > > Thanks again so much for your help! > > > > > > -John Tramm > > > > > > > > > On Wed, Jan 7, 2015 at 12:47 PM, Allen, Benjamin S. <bsallen(a)alcf.anl.gov> wrote: > > > Hi John, > > > > > > The RHEL6 image was missing libXxf86vm, I've re-deployed the three servers (Ruth, Lucie, Jenny) with libXxf86vm installed. I've also updated "sep", which is the sampling kernel module for both the MIC and the host. I doesn't look like Intel included the Power sampling kernel module with Vtune Amplifier XE 2015 however, ie. /soft/compilers/intel/vtune_amplifier_xe_2013/powerdk/src. > > > > > > Let me know if you run into any more problems. > > > > > > Ben > > > > > > > On Jan 6, 2015, at 2:50 PM, John Tramm <jtramm(a)mcs.anl.gov> wrote: > > > > > > > > Ben, > > > > > > > > I'm trying to use vtune to analyze performance of my application on the mic. I can't seem to get Vtune to run on the host node (either lucie or jenny). I keep getting the following error: > > > > > > > > amplxe-gui: error while loading shared libraries: libXxf86vm.so.1: cannot open shared object file: No such file or directory > > > > > > > > There seems to be a shared library file missing somewhere that I can't seem to find. Perhaps I need to add something to my linker path? > > > > > > > > Thanks for your help! > > > > > > > > -John > > > > > > > > > > > > > > > > On Tue, Jan 6, 2015 at 10:35 AM, John Tramm <jtramm(a)mcs.anl.gov> wrote: > > > > Allen, > > > > > > > > Yes, everything seems to be working great now. Thanks! > > > > > > > > -John > > > > > > > > On Mon, Jan 5, 2015 at 2:26 PM, Allen, Benjamin S. <bsallen(a)alcf.anl.gov> wrote: > > > > Hi John, > > > > > > > > This should be fixed. Let me know if you run into further issues. > > > > > > > > Ben > > > > > > > > > On Jan 5, 2015, at 11:53 AM, John Tramm <jtramm(a)mcs.anl.gov> wrote: > > > > > > > > > > Greetings, > > > > > > > > > > I'm trying to use the JLSE MIC nodes, but I can't seem to get my home directory to show up on mic0 itself. It is available on the host, but it doesn't seem to be able to connect on the MIC. I recall a few months ago I was able to access my home dir on the mic. > > > > > > > > > > Do I need to run anything to get access to the home dir? > > > > > > > > > > Thanks! > > > > > > > > > > -John Tramm > > > > > _______________________________________________ > > > > > Admins mailing list > > > > > Admins(a)lists.jlse.anl.gov > > > > > https://lists.jlse.anl.gov/mailman/listinfo/admins > > > > > > > > > > > > > > > > > > > > > > > >

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Re: [JLSE-Admins] JLSE MIC home directory
by John Tramm 14 Jan '15

14 Jan '15

Hey Ben, Thanks for doing this! I would ideally like all of the packages installed, as I'm not sure which ones I need and which I don't. My app doesn't have any outside dependencies, and it really just uses pretty normal C and OpenMP includes, so I'm guessing if it has issues with just that I will probably need them all (unless you have reason to believe otherwise). Thanks again! -John On Wed, Jan 14, 2015 at 6:58 PM, Allen, Benjamin S. <bsallen(a)alcf.anl.gov> wrote: > Hi John, > > Yea I can do this. I should be able to get to it sometime this week, at > worst early next week. Do you want all of the dbg packages installed, or do > you have a specific list you want? > > Ben > > > On Jan 14, 2015, at 11:21 AM, John Tramm <jtramm(a)mcs.anl.gov> wrote: > > > > Ben, > > > > I tried running through the CLI mode, and had the same problems. It > would be really great if you could install the required packages, as Vtune > offers a lot in terms of performance analysis that can't be done any other > way on the MIC. I understand the desire to keep the install bloat to a > minimum, but Vtune is pretty essential to working with the MIC. I'm really > in the dark as to what's going on with my application without being able to > use Vtune, as even simple things like grpof don't work on there. > > > > Here's what I'm getting: > > > > jtramm@lucie:~/SimpleMOC-kernel/src/cpu$ export > INTEL_LICENSE_FILE=28518@ftsn2 > > jtramm@lucie:~/SimpleMOC-kernel/src/cpu$ source > /soft/compilers/intel/vtune_amplifier_xe/amplxe-vars.sh > > Copyright (C) 2009-2014 Intel Corporation. All rights reserved. > > Intel(R) VTune(TM) Amplifier XE 2015 (build 380310) > > jtramm@lucie:~/SimpleMOC-kernel/src/cpu$ amplxe-cl -collect > advanced-hotspots -target-system=mic-native:0 -- > /home/jtramm/SimpleMOC-kernel/src/cpu/SimpleMOC-kernel > > amplxe: Using target: mic-native:0 > > amplxe: Collection started. To stop the collection, either press CTRL-C > or enter from another console window: amplxe-cl -r > /home/jtramm/SimpleMOC-kernel/src/cpu/r001ah -command stop. > > amplxe: Collection stopped. > > amplxe: Using result path `/home/jtramm/SimpleMOC-kernel/src/cpu/r001ah' > > amplxe: Executing actions 16 % Resolving module symbols > > amplxe: Locating file `/usr/lib/debug/lib/modules/2.6.38.8+mpss3.4.2/vmlinux' > on the remote system > > amplxe: Locating file `/boot/vmlinuz-2.6.38.8+mpss3.4.2' on the remote > system > > amplxe: Executing actions 16 % Resolving information for ` > libc-2.14.90.so' > > amplxe: Warning: Cannot locate debugging symbols for file > `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/ > libc-2.14.90.so/45397051311f95599054edd6ac8d616d/libc-2.14.90.so'. > > amplxe: Locating file `vmlinux-2.6.38.8+mpss3.4.2' on the remote system > > amplxe: Locating file `/boot/vmlinuz' on the remote system > > amplxe: Executing actions 16 % Resolving information for `ld-2.14.90.so' > > amplxe: Warning: Cannot locate debugging symbols for file > `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/ > ld-2.14.90.so/5152c3600c8161c8d9c8d152b5ad591e/ld-2.14.90.so'. > > amplxe: Executing actions 17 % Resolving information for `ld-2.14.90.so' > > amplxe: Locating file `intel_micveth.ko' on the remote system > > amplxe: Warning: Cannot locate file `/usr/lib/debug/lib/modules/2.6.38.8 > +mpss3.4.2/vmlinux'. > > amplxe: Executing actions 18 % Resolving information for dangling > locations > > amplxe: Warning: Cannot locate file `intel_micveth.ko'. > > amplxe: Executing actions 18 % Resolving information for > `libgnutls.so.26.22.0' > > amplxe: Warning: Cannot locate debugging symbols for file > `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libgnutls.so.26.22.0/9d99eae1cacffaa3f20e5a2312f69282/libgnutls.so.26.22.0'. > > amplxe: Executing actions 18 % Resolving information for > `libgcrypt.so.11.7.0' > > amplxe: Warning: Cannot locate debugging symbols for file > `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libgcrypt.so.11.7.0/587958b33eac1b807e852f640262da62/libgcrypt.so.11.7.0'. > > amplxe: Executing actions 19 % Resolving information for ` > libnss_ldap-2.12.2.so > > amplxe: Warning: Cannot locate debugging symbols for file > `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/ > libnss_ldap-2.12.2.so/0d6aa4bfd689f60ef5b0b94edf8d3ed1/libnss_ldap-2.12.2.so > '. > > amplxe: Executing actions 19 % Resolving information for `sshd' > > amplxe: Warning: Cannot locate debugging symbols for file > `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/sshd/4354ab1d5cd53de91c85d8abe4000899/sshd'. > > amplxe: Executing actions 19 % Resolving information for > `libcrypto.so.1.0.0' > > amplxe: Warning: Cannot locate debugging symbols for file > `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libcrypto.so.1.0.0/2fc14f872d9ca6c49501676046029554/libcrypto.so.1.0.0'. > > amplxe: Executing actions 20 % Resolving information for > `libtasn1.so.3.1.13' > > amplxe: Warning: Cannot locate debugging symbols for file > `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libtasn1.so.3.1.13/0ba82903ca399644d103aed874e3ba7c/libtasn1.so.3.1.13'. > > amplxe: Executing actions 50 % Generating a report > > > > General Exploration Metrics > > --------------------------- > > Parameter r001ah > > -------------------- --------- > > CPU Time 0.300 > > Clockticks 372000558 > > Instructions Retired 95333238 > > CPI Rate 3.902 > > Cache Usage 0.0 > > Vectorization Usage 0.0 > > TLB Usage 0.0 > > > > Collection and Platform Info > > ---------------------------- > > Parameter r001ah > > ------------------------ > ----------------------------------------------------------------- > > Application Command Line > /home/jtramm/SimpleMOC-kernel/src/cpu/SimpleMOC-kernel > > User Name jtramm > > Operating System Intel MIC Platform Software Stack (Built by > Poky 7.0) 3.4.2 \n \l > > Computer Name lucie-mic0.ftm.alcf.anl.gov > > Result Size 2272316 > > > > CPU > > --- > > Parameter r001ah > > ----------------- -------------------------- > > Name Intel Xeon Phi coprocessor > > Frequency 1238000000 > > Logical CPU Count 244 > > > > Summary > > ------- > > Elapsed Time: 0.392 > > CPU Time: 0.300 > > Average CPU Usage: 0.548 > > CPI Rate: 3.902 > > > > Event summary > > ------------- > > Hardware Event Type Hardware Event Count:Self Hardware Event Sample > Count:Self Events Per Sample > > --------------------- ------------------------- > -------------------------------- ----------------- > > CPU_CLK_UNHALTED 372000558 > 186 2000003 > > INSTRUCTIONS_EXECUTED 95333238 > 77 1238094 > > amplxe: Executing actions 100 % done > > > > > > Thanks for your help! > > > > -John > > > > On Wed, Jan 7, 2015 at 2:44 PM, Allen, Benjamin S. <bsallen(a)alcf.anl.gov> > wrote: > > I have little to no experience with VTune. However looking at the screen > cap the kernel modules referenced can be found on the MIC at: > > > > /lib/modules/2.6.38.8+mpss3.4.2/extra/vnet/intel_micveth.ko > > /sep3.15/sep3_15-k1om-2.6.38.8+mpss3.4.2smp.ko > > > > If I'd have to guess, the debugging symbols are missing because I don't > have any of the k1om debug packages installed on the MICs themselves, i.e. > "dbg" RPMs from > http://registrationcenter.intel.com/irc_nas/5017/mpss-3.4.2-k1om.tar. I > try to keep the packages installed directly on the MICs to a minimum as > they appear to sit in a RAM disk. > > > > Perhaps try running with CLI version of Vtune, amplxe-cl to see if it > outputs anymore useful information? > > > > Example: > > > > export INTEL_LICENSE_FILE=28518@ftsn2 > > source /soft/compilers/intel/vtune_amplifier_xe/amplxe-vars.sh > > amplxe-cl -collect advanced-hotspots -target-system=mic-native ls -CF > /usr/bin > > > > Ben > > > > > > > On Jan 7, 2015, at 1:07 PM, John Tramm <jtramm(a)mcs.anl.gov> wrote: > > > > > > Ben, > > > > > > Thanks for re-deploying - it definitely seems to have helped. I'm now > able to run the vtune GUI. > > > > > > However, now I'm running into a new issue. When I run vtune from the > host, in order to analyze an app run on the device, it doesn't appear to be > launching successfully (i.e., nothing is output to the terminal, and the > resulting vtune analysis says the code only ran for a fraction of a second, > when it should be at least several seconds on the MIC). > > > > > > It also outputs this set of errors when running my project: > > > > > > <Screen Shot 2015-01-07 at 12.56.50 PM.png> > > > > > > > > > Can you think of anything that might cause this? > > > > > > Thanks again so much for your help! > > > > > > -John Tramm > > > > > > > > > On Wed, Jan 7, 2015 at 12:47 PM, Allen, Benjamin S. < > bsallen(a)alcf.anl.gov> wrote: > > > Hi John, > > > > > > The RHEL6 image was missing libXxf86vm, I've re-deployed the three > servers (Ruth, Lucie, Jenny) with libXxf86vm installed. I've also updated > "sep", which is the sampling kernel module for both the MIC and the host. I > doesn't look like Intel included the Power sampling kernel module with > Vtune Amplifier XE 2015 however, ie. > /soft/compilers/intel/vtune_amplifier_xe_2013/powerdk/src. > > > > > > Let me know if you run into any more problems. > > > > > > Ben > > > > > > > On Jan 6, 2015, at 2:50 PM, John Tramm <jtramm(a)mcs.anl.gov> wrote: > > > > > > > > Ben, > > > > > > > > I'm trying to use vtune to analyze performance of my application on > the mic. I can't seem to get Vtune to run on the host node (either lucie or > jenny). I keep getting the following error: > > > > > > > > amplxe-gui: error while loading shared libraries: libXxf86vm.so.1: > cannot open shared object file: No such file or directory > > > > > > > > There seems to be a shared library file missing somewhere that I > can't seem to find. Perhaps I need to add something to my linker path? > > > > > > > > Thanks for your help! > > > > > > > > -John > > > > > > > > > > > > > > > > On Tue, Jan 6, 2015 at 10:35 AM, John Tramm <jtramm(a)mcs.anl.gov> > wrote: > > > > Allen, > > > > > > > > Yes, everything seems to be working great now. Thanks! > > > > > > > > -John > > > > > > > > On Mon, Jan 5, 2015 at 2:26 PM, Allen, Benjamin S. < > bsallen(a)alcf.anl.gov> wrote: > > > > Hi John, > > > > > > > > This should be fixed. Let me know if you run into further issues. > > > > > > > > Ben > > > > > > > > > On Jan 5, 2015, at 11:53 AM, John Tramm <jtramm(a)mcs.anl.gov> > wrote: > > > > > > > > > > Greetings, > > > > > > > > > > I'm trying to use the JLSE MIC nodes, but I can't seem to get my > home directory to show up on mic0 itself. It is available on the host, but > it doesn't seem to be able to connect on the MIC. I recall a few months ago > I was able to access my home dir on the mic. > > > > > > > > > > Do I need to run anything to get access to the home dir? > > > > > > > > > > Thanks! > > > > > > > > > > -John Tramm > > > > > _______________________________________________ > > > > > Admins mailing list > > > > > Admins(a)lists.jlse.anl.gov > > > > > https://lists.jlse.anl.gov/mailman/listinfo/admins > > > > > > > > > > > > > > > > > > > > > > > >

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Re: [JLSE-Admins] JLSE MIC home directory
by Allen, Benjamin S. 14 Jan '15

14 Jan '15

Hi John, Yea I can do this. I should be able to get to it sometime this week, at worst early next week. Do you want all of the dbg packages installed, or do you have a specific list you want? Ben > On Jan 14, 2015, at 11:21 AM, John Tramm <jtramm(a)mcs.anl.gov> wrote: > > Ben, > > I tried running through the CLI mode, and had the same problems. It would be really great if you could install the required packages, as Vtune offers a lot in terms of performance analysis that can't be done any other way on the MIC. I understand the desire to keep the install bloat to a minimum, but Vtune is pretty essential to working with the MIC. I'm really in the dark as to what's going on with my application without being able to use Vtune, as even simple things like grpof don't work on there. > > Here's what I'm getting: > > jtramm@lucie:~/SimpleMOC-kernel/src/cpu$ export INTEL_LICENSE_FILE=28518@ftsn2 > jtramm@lucie:~/SimpleMOC-kernel/src/cpu$ source /soft/compilers/intel/vtune_amplifier_xe/amplxe-vars.sh > Copyright (C) 2009-2014 Intel Corporation. All rights reserved. > Intel(R) VTune(TM) Amplifier XE 2015 (build 380310) > jtramm@lucie:~/SimpleMOC-kernel/src/cpu$ amplxe-cl -collect advanced-hotspots -target-system=mic-native:0 -- /home/jtramm/SimpleMOC-kernel/src/cpu/SimpleMOC-kernel > amplxe: Using target: mic-native:0 > amplxe: Collection started. To stop the collection, either press CTRL-C or enter from another console window: amplxe-cl -r /home/jtramm/SimpleMOC-kernel/src/cpu/r001ah -command stop. > amplxe: Collection stopped. > amplxe: Using result path `/home/jtramm/SimpleMOC-kernel/src/cpu/r001ah' > amplxe: Executing actions 16 % Resolving module symbols > amplxe: Locating file `/usr/lib/debug/lib/modules/2.6.38.8+mpss3.4.2/vmlinux' on the remote system > amplxe: Locating file `/boot/vmlinuz-2.6.38.8+mpss3.4.2' on the remote system > amplxe: Executing actions 16 % Resolving information for `libc-2.14.90.so' > amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libc-2.14.90.so/45397051311f95599054edd6ac8d616d/libc-2.14.90.so'. > amplxe: Locating file `vmlinux-2.6.38.8+mpss3.4.2' on the remote system > amplxe: Locating file `/boot/vmlinuz' on the remote system > amplxe: Executing actions 16 % Resolving information for `ld-2.14.90.so' > amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/ld-2.14.90.so/5152c3600c8161c8d9c8d152b5ad591e/ld-2.14.90.so'. > amplxe: Executing actions 17 % Resolving information for `ld-2.14.90.so' > amplxe: Locating file `intel_micveth.ko' on the remote system > amplxe: Warning: Cannot locate file `/usr/lib/debug/lib/modules/2.6.38.8+mpss3.4.2/vmlinux'. > amplxe: Executing actions 18 % Resolving information for dangling locations > amplxe: Warning: Cannot locate file `intel_micveth.ko'. > amplxe: Executing actions 18 % Resolving information for `libgnutls.so.26.22.0' > amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libgnutls.so.26.22.0/9d99eae1cacffaa3f20e5a2312f69282/libgnutls.so.26.22.0'. > amplxe: Executing actions 18 % Resolving information for `libgcrypt.so.11.7.0' > amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libgcrypt.so.11.7.0/587958b33eac1b807e852f640262da62/libgcrypt.so.11.7.0'. > amplxe: Executing actions 19 % Resolving information for `libnss_ldap-2.12.2.so > amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libnss_ldap-2.12.2.so/0d6aa4bfd689f60ef5b0b94edf8d3ed1/libnss_ldap-2.12.2.so'. > amplxe: Executing actions 19 % Resolving information for `sshd' > amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/sshd/4354ab1d5cd53de91c85d8abe4000899/sshd'. > amplxe: Executing actions 19 % Resolving information for `libcrypto.so.1.0.0' > amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libcrypto.so.1.0.0/2fc14f872d9ca6c49501676046029554/libcrypto.so.1.0.0'. > amplxe: Executing actions 20 % Resolving information for `libtasn1.so.3.1.13' > amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libtasn1.so.3.1.13/0ba82903ca399644d103aed874e3ba7c/libtasn1.so.3.1.13'. > amplxe: Executing actions 50 % Generating a report > > General Exploration Metrics > --------------------------- > Parameter r001ah > -------------------- --------- > CPU Time 0.300 > Clockticks 372000558 > Instructions Retired 95333238 > CPI Rate 3.902 > Cache Usage 0.0 > Vectorization Usage 0.0 > TLB Usage 0.0 > > Collection and Platform Info > ---------------------------- > Parameter r001ah > ------------------------ ----------------------------------------------------------------- > Application Command Line /home/jtramm/SimpleMOC-kernel/src/cpu/SimpleMOC-kernel > User Name jtramm > Operating System Intel MIC Platform Software Stack (Built by Poky 7.0) 3.4.2 \n \l > Computer Name lucie-mic0.ftm.alcf.anl.gov > Result Size 2272316 > > CPU > --- > Parameter r001ah > ----------------- -------------------------- > Name Intel Xeon Phi coprocessor > Frequency 1238000000 > Logical CPU Count 244 > > Summary > ------- > Elapsed Time: 0.392 > CPU Time: 0.300 > Average CPU Usage: 0.548 > CPI Rate: 3.902 > > Event summary > ------------- > Hardware Event Type Hardware Event Count:Self Hardware Event Sample Count:Self Events Per Sample > --------------------- ------------------------- -------------------------------- ----------------- > CPU_CLK_UNHALTED 372000558 186 2000003 > INSTRUCTIONS_EXECUTED 95333238 77 1238094 > amplxe: Executing actions 100 % done > > > Thanks for your help! > > -John > > On Wed, Jan 7, 2015 at 2:44 PM, Allen, Benjamin S. <bsallen(a)alcf.anl.gov> wrote: > I have little to no experience with VTune. However looking at the screen cap the kernel modules referenced can be found on the MIC at: > > /lib/modules/2.6.38.8+mpss3.4.2/extra/vnet/intel_micveth.ko > /sep3.15/sep3_15-k1om-2.6.38.8+mpss3.4.2smp.ko > > If I'd have to guess, the debugging symbols are missing because I don't have any of the k1om debug packages installed on the MICs themselves, i.e. "dbg" RPMs from http://registrationcenter.intel.com/irc_nas/5017/mpss-3.4.2-k1om.tar. I try to keep the packages installed directly on the MICs to a minimum as they appear to sit in a RAM disk. > > Perhaps try running with CLI version of Vtune, amplxe-cl to see if it outputs anymore useful information? > > Example: > > export INTEL_LICENSE_FILE=28518@ftsn2 > source /soft/compilers/intel/vtune_amplifier_xe/amplxe-vars.sh > amplxe-cl -collect advanced-hotspots -target-system=mic-native ls -CF /usr/bin > > Ben > > > > On Jan 7, 2015, at 1:07 PM, John Tramm <jtramm(a)mcs.anl.gov> wrote: > > > > Ben, > > > > Thanks for re-deploying - it definitely seems to have helped. I'm now able to run the vtune GUI. > > > > However, now I'm running into a new issue. When I run vtune from the host, in order to analyze an app run on the device, it doesn't appear to be launching successfully (i.e., nothing is output to the terminal, and the resulting vtune analysis says the code only ran for a fraction of a second, when it should be at least several seconds on the MIC). > > > > It also outputs this set of errors when running my project: > > > > <Screen Shot 2015-01-07 at 12.56.50 PM.png> > > > > > > Can you think of anything that might cause this? > > > > Thanks again so much for your help! > > > > -John Tramm > > > > > > On Wed, Jan 7, 2015 at 12:47 PM, Allen, Benjamin S. <bsallen(a)alcf.anl.gov> wrote: > > Hi John, > > > > The RHEL6 image was missing libXxf86vm, I've re-deployed the three servers (Ruth, Lucie, Jenny) with libXxf86vm installed. I've also updated "sep", which is the sampling kernel module for both the MIC and the host. I doesn't look like Intel included the Power sampling kernel module with Vtune Amplifier XE 2015 however, ie. /soft/compilers/intel/vtune_amplifier_xe_2013/powerdk/src. > > > > Let me know if you run into any more problems. > > > > Ben > > > > > On Jan 6, 2015, at 2:50 PM, John Tramm <jtramm(a)mcs.anl.gov> wrote: > > > > > > Ben, > > > > > > I'm trying to use vtune to analyze performance of my application on the mic. I can't seem to get Vtune to run on the host node (either lucie or jenny). I keep getting the following error: > > > > > > amplxe-gui: error while loading shared libraries: libXxf86vm.so.1: cannot open shared object file: No such file or directory > > > > > > There seems to be a shared library file missing somewhere that I can't seem to find. Perhaps I need to add something to my linker path? > > > > > > Thanks for your help! > > > > > > -John > > > > > > > > > > > > On Tue, Jan 6, 2015 at 10:35 AM, John Tramm <jtramm(a)mcs.anl.gov> wrote: > > > Allen, > > > > > > Yes, everything seems to be working great now. Thanks! > > > > > > -John > > > > > > On Mon, Jan 5, 2015 at 2:26 PM, Allen, Benjamin S. <bsallen(a)alcf.anl.gov> wrote: > > > Hi John, > > > > > > This should be fixed. Let me know if you run into further issues. > > > > > > Ben > > > > > > > On Jan 5, 2015, at 11:53 AM, John Tramm <jtramm(a)mcs.anl.gov> wrote: > > > > > > > > Greetings, > > > > > > > > I'm trying to use the JLSE MIC nodes, but I can't seem to get my home directory to show up on mic0 itself. It is available on the host, but it doesn't seem to be able to connect on the MIC. I recall a few months ago I was able to access my home dir on the mic. > > > > > > > > Do I need to run anything to get access to the home dir? > > > > > > > > Thanks! > > > > > > > > -John Tramm > > > > _______________________________________________ > > > > Admins mailing list > > > > Admins(a)lists.jlse.anl.gov > > > > https://lists.jlse.anl.gov/mailman/listinfo/admins > > > > > > > > > > > > > > >

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Re: [JLSE-Admins] network to tinkerlab
by Kazutomo Yoshii 14 Jan '15

14 Jan '15

Ben, That's helpful! It sounds like the network cabinet is ready to install. I hope this is done in next week. I need to make sure that all tinkerlab users have the JLSE account. I guess the process can be done before the license expires. In case it's not ready by the time, here are the machines I'd like to add. {knight,protos,duteros,tritos}.mcs.anl.gov - kaz On 01/13/2015 12:23 PM, Allen, Benjamin S. wrote: > Kaz, > > If the networking doesn't get fixed up by the time your license expires, I can open the firewall on my license server to allow your specific servers access via MCS' labnet. > > Ben > >> On Jan 13, 2015, at 12:16 PM, Kazutomo Yoshii <kazutomo(a)mcs.anl.gov> wrote: >> >> Hi Ben, >> >> Could you remind me who is working on the network to tinkerlab? >> >> Tinkerlab intel compiler's license will expire soon. >> One of the solution is to use the JLSE license server but >> I guess that requires the network to be configured. >> >> - kaz >> >> _______________________________________________ >> Admins mailing list >> Admins(a)lists.jlse.anl.gov >> https://lists.jlse.anl.gov/mailman/listinfo/admins

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Re: [JLSE-Admins] JLSE MIC home directory
by John Tramm 14 Jan '15

14 Jan '15

Ben, I tried running through the CLI mode, and had the same problems. It would be really great if you could install the required packages, as Vtune offers a lot in terms of performance analysis that can't be done any other way on the MIC. I understand the desire to keep the install bloat to a minimum, but Vtune is pretty essential to working with the MIC. I'm really in the dark as to what's going on with my application without being able to use Vtune, as even simple things like grpof don't work on there. Here's what I'm getting: jtramm@lucie:~/SimpleMOC-kernel/src/cpu$ export INTEL_LICENSE_FILE=28518@ftsn2 jtramm@lucie:~/SimpleMOC-kernel/src/cpu$ source /soft/compilers/intel/vtune_amplifier_xe/amplxe-vars.sh Copyright (C) 2009-2014 Intel Corporation. All rights reserved. Intel(R) VTune(TM) Amplifier XE 2015 (build 380310) jtramm@lucie:~/SimpleMOC-kernel/src/cpu$ amplxe-cl -collect advanced-hotspots -target-system=mic-native:0 -- /home/jtramm/SimpleMOC-kernel/src/cpu/SimpleMOC-kernel amplxe: Using target: mic-native:0 amplxe: Collection started. To stop the collection, either press CTRL-C or enter from another console window: amplxe-cl -r /home/jtramm/SimpleMOC-kernel/src/cpu/r001ah -command stop. amplxe: Collection stopped. amplxe: Using result path `/home/jtramm/SimpleMOC-kernel/src/cpu/r001ah' amplxe: Executing actions 16 % Resolving module symbols amplxe: Locating file `/usr/lib/debug/lib/modules/2.6.38.8+mpss3.4.2/vmlinux' on the remote system amplxe: Locating file `/boot/vmlinuz-2.6.38.8+mpss3.4.2' on the remote system amplxe: Executing actions 16 % Resolving information for `libc-2.14.90.so' amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/ libc-2.14.90.so/45397051311f95599054edd6ac8d616d/libc-2.14.90.so'. amplxe: Locating file `vmlinux-2.6.38.8+mpss3.4.2' on the remote system amplxe: Locating file `/boot/vmlinuz' on the remote system amplxe: Executing actions 16 % Resolving information for `ld-2.14.90.so' amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/ ld-2.14.90.so/5152c3600c8161c8d9c8d152b5ad591e/ld-2.14.90.so'. amplxe: Executing actions 17 % Resolving information for `ld-2.14.90.so' amplxe: Locating file `intel_micveth.ko' on the remote system amplxe: Warning: Cannot locate file `/usr/lib/debug/lib/modules/2.6.38.8 +mpss3.4.2/vmlinux'. amplxe: Executing actions 18 % Resolving information for dangling locations amplxe: Warning: Cannot locate file `intel_micveth.ko'. amplxe: Executing actions 18 % Resolving information for `libgnutls.so.26.22.0' amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libgnutls.so.26.22.0/9d99eae1cacffaa3f20e5a2312f69282/libgnutls.so.26.22.0'. amplxe: Executing actions 18 % Resolving information for `libgcrypt.so.11.7.0' amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libgcrypt.so.11.7.0/587958b33eac1b807e852f640262da62/libgcrypt.so.11.7.0'. amplxe: Executing actions 19 % Resolving information for ` libnss_ldap-2.12.2.so amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/ libnss_ldap-2.12.2.so/0d6aa4bfd689f60ef5b0b94edf8d3ed1/libnss_ldap-2.12.2.so '. amplxe: Executing actions 19 % Resolving information for `sshd' amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/sshd/4354ab1d5cd53de91c85d8abe4000899/sshd'. amplxe: Executing actions 19 % Resolving information for `libcrypto.so.1.0.0' amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libcrypto.so.1.0.0/2fc14f872d9ca6c49501676046029554/libcrypto.so.1.0.0'. amplxe: Executing actions 20 % Resolving information for `libtasn1.so.3.1.13' amplxe: Warning: Cannot locate debugging symbols for file `/tmp/amplxe-tmp-jtramm/modules.mic-native_0/libtasn1.so.3.1.13/0ba82903ca399644d103aed874e3ba7c/libtasn1.so.3.1.13'. amplxe: Executing actions 50 % Generating a report General Exploration Metrics --------------------------- Parameter r001ah -------------------- --------- CPU Time 0.300 Clockticks 372000558 Instructions Retired 95333238 CPI Rate 3.902 Cache Usage 0.0 Vectorization Usage 0.0 TLB Usage 0.0 Collection and Platform Info ---------------------------- Parameter r001ah ------------------------ ----------------------------------------------------------------- Application Command Line /home/jtramm/SimpleMOC-kernel/src/cpu/SimpleMOC-kernel User Name jtramm Operating System Intel MIC Platform Software Stack (Built by Poky 7.0) 3.4.2 \n \l Computer Name lucie-mic0.ftm.alcf.anl.gov Result Size 2272316 CPU --- Parameter r001ah ----------------- -------------------------- Name Intel Xeon Phi coprocessor Frequency 1238000000 Logical CPU Count 244 Summary ------- Elapsed Time: 0.392 CPU Time: 0.300 Average CPU Usage: 0.548 CPI Rate: 3.902 Event summary ------------- Hardware Event Type Hardware Event Count:Self Hardware Event Sample Count:Self Events Per Sample --------------------- ------------------------- -------------------------------- ----------------- CPU_CLK_UNHALTED 372000558 186 2000003 INSTRUCTIONS_EXECUTED 95333238 77 1238094 amplxe: Executing actions 100 % done Thanks for your help! -John On Wed, Jan 7, 2015 at 2:44 PM, Allen, Benjamin S. <bsallen(a)alcf.anl.gov> wrote: > I have little to no experience with VTune. However looking at the screen > cap the kernel modules referenced can be found on the MIC at: > > /lib/modules/2.6.38.8+mpss3.4.2/extra/vnet/intel_micveth.ko > /sep3.15/sep3_15-k1om-2.6.38.8+mpss3.4.2smp.ko > > If I'd have to guess, the debugging symbols are missing because I don't > have any of the k1om debug packages installed on the MICs themselves, i.e. > "dbg" RPMs from > http://registrationcenter.intel.com/irc_nas/5017/mpss-3.4.2-k1om.tar. I > try to keep the packages installed directly on the MICs to a minimum as > they appear to sit in a RAM disk. > > Perhaps try running with CLI version of Vtune, amplxe-cl to see if it > outputs anymore useful information? > > Example: > > export INTEL_LICENSE_FILE=28518@ftsn2 > source /soft/compilers/intel/vtune_amplifier_xe/amplxe-vars.sh > amplxe-cl -collect advanced-hotspots -target-system=mic-native ls -CF > /usr/bin > > Ben > > > > On Jan 7, 2015, at 1:07 PM, John Tramm <jtramm(a)mcs.anl.gov> wrote: > > > > Ben, > > > > Thanks for re-deploying - it definitely seems to have helped. I'm now > able to run the vtune GUI. > > > > However, now I'm running into a new issue. When I run vtune from the > host, in order to analyze an app run on the device, it doesn't appear to be > launching successfully (i.e., nothing is output to the terminal, and the > resulting vtune analysis says the code only ran for a fraction of a second, > when it should be at least several seconds on the MIC). > > > > It also outputs this set of errors when running my project: > > > > <Screen Shot 2015-01-07 at 12.56.50 PM.png> > > > > > > Can you think of anything that might cause this? > > > > Thanks again so much for your help! > > > > -John Tramm > > > > > > On Wed, Jan 7, 2015 at 12:47 PM, Allen, Benjamin S. < > bsallen(a)alcf.anl.gov> wrote: > > Hi John, > > > > The RHEL6 image was missing libXxf86vm, I've re-deployed the three > servers (Ruth, Lucie, Jenny) with libXxf86vm installed. I've also updated > "sep", which is the sampling kernel module for both the MIC and the host. I > doesn't look like Intel included the Power sampling kernel module with > Vtune Amplifier XE 2015 however, ie. > /soft/compilers/intel/vtune_amplifier_xe_2013/powerdk/src. > > > > Let me know if you run into any more problems. > > > > Ben > > > > > On Jan 6, 2015, at 2:50 PM, John Tramm <jtramm(a)mcs.anl.gov> wrote: > > > > > > Ben, > > > > > > I'm trying to use vtune to analyze performance of my application on > the mic. I can't seem to get Vtune to run on the host node (either lucie or > jenny). I keep getting the following error: > > > > > > amplxe-gui: error while loading shared libraries: libXxf86vm.so.1: > cannot open shared object file: No such file or directory > > > > > > There seems to be a shared library file missing somewhere that I can't > seem to find. Perhaps I need to add something to my linker path? > > > > > > Thanks for your help! > > > > > > -John > > > > > > > > > > > > On Tue, Jan 6, 2015 at 10:35 AM, John Tramm <jtramm(a)mcs.anl.gov> > wrote: > > > Allen, > > > > > > Yes, everything seems to be working great now. Thanks! > > > > > > -John > > > > > > On Mon, Jan 5, 2015 at 2:26 PM, Allen, Benjamin S. < > bsallen(a)alcf.anl.gov> wrote: > > > Hi John, > > > > > > This should be fixed. Let me know if you run into further issues. > > > > > > Ben > > > > > > > On Jan 5, 2015, at 11:53 AM, John Tramm <jtramm(a)mcs.anl.gov> wrote: > > > > > > > > Greetings, > > > > > > > > I'm trying to use the JLSE MIC nodes, but I can't seem to get my > home directory to show up on mic0 itself. It is available on the host, but > it doesn't seem to be able to connect on the MIC. I recall a few months ago > I was able to access my home dir on the mic. > > > > > > > > Do I need to run anything to get access to the home dir? > > > > > > > > Thanks! > > > > > > > > -John Tramm > > > > _______________________________________________ > > > > Admins mailing list > > > > Admins(a)lists.jlse.anl.gov > > > > https://lists.jlse.anl.gov/mailman/listinfo/admins > > > > > > > > > > > > > > >

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Re: [JLSE-Admins] network to tinkerlab
by Allen, Benjamin S. 13 Jan '15

13 Jan '15

Kaz, If the networking doesn't get fixed up by the time your license expires, I can open the firewall on my license server to allow your specific servers access via MCS' labnet. Ben > On Jan 13, 2015, at 12:16 PM, Kazutomo Yoshii <kazutomo(a)mcs.anl.gov> wrote: > > Hi Ben, > > Could you remind me who is working on the network to tinkerlab? > > Tinkerlab intel compiler's license will expire soon. > One of the solution is to use the JLSE license server but > I guess that requires the network to be configured. > > - kaz > > _______________________________________________ > Admins mailing list > Admins(a)lists.jlse.anl.gov > https://lists.jlse.anl.gov/mailman/listinfo/admins

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