FW: Testing of gene conservation
Tom, Here is a test of our resolve. The gene_conservation service will not have unit tests because they carried over the tests from a previous module (interlog_projection). We could attempt black-box testing and see if we get it done in time. Miriam From: <Yoo>, Shinjae Yoo <[email protected]<mailto:[email protected]>> Date: Thursday, February 6, 2014 1:07 PM To: Miriam Land <[email protected]<mailto:[email protected]>> Cc: Gang Fang <[email protected]<mailto:[email protected]>> Subject: Re: Testing of gene conservation Oh Miriam, The test scripts are not for gene_conservation service… I don’t think I committed my test script… but it failed… and thus I haen’t committed them yet… I got more works for narrative today and tomorrow… So, I guess I don’t have enough time to work on this… Sorry :-( Thanks, -SJ On Feb 6, 2014, at 11:41 AM, Land, Miriam L. <[email protected]<mailto:[email protected]>> wrote: Gang, I'm testing the gene_conservation module and it starts out fine and then runs into this problem: ------------------------ ./test_start_service starting test gene_conservation service. gene_conservation service is listening on port 9999. perl t/client-tests/basic_tests.t 1..16 ok 1 - Did an object get defined OBJECT: Bio::KBase::interlog_projection::Client=HASH(0x254d290) ok 2 - 'Is it in the right class' isa 'Bio::KBase::interlog_projection::Client' ok 3 - Bio::KBase::interlog_projection::Client->can(...) Error invoking method project_network_with_custom_methods HTTP status: 500 Internal Server Error Function invoked: project_network_with_custom_methods Trace begun at lib/Bio/KBase/interlog_projection/Client.pm line 144 Bio::KBase::interlog_projection::Client::project_network_with_custom_methods('Bio::KBase::interlog_projection::Client=HASH(0x254d290)', 'HASH(0x25d27c8)', 'kb|g.3907', 'any', 0.001) called at t/client-tests/basic_tests.t line 43 eval {...} at t/client-tests/basic_tests.t line 42 not ok 4 - project_network_with_custom_methods # Failed test 'project_network_with_custom_methods' # at t/client-tests/basic_tests.t line 46. ---------------------------- Does something need to be started or configured? It looks like it is trying to invoke the interlog_projection module. Miriam
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Land, Miriam L.