Looks like two issues. First is a module that doesn't do a recompile before install to get the proper default service URL in place. Second is one that has the wrong URL for the ID server; possibly another instance of the first problem in the client deployment of the ID server. I also wonder exactly what that service is using the ID server for. --bob On Feb 26, 2014, at 7:46 PM, Nomi Harris <[email protected]> wrote:

So I’m trying some commands in IRIS (for commands whose —help output supplies an example) and running into various errors, for example:

...

/ fop-rank-pgene --wgene "kb|g.3899.locus.6994" --pgenes "kb|g.3907.locus.19887,kb|g.3907.locus.24709" --ndatasets "kb|netdataset.plant.fn.25" ",'kb|netdataset.plant.fn.27'" Return code from fop-rank-pgene: 111Error invoking method rank_pgene HTTP status: 500 Can't connect to localhost:7082 (Connection refused) Function invoked: rank_pgene Trace begun at /kbase/deployments/20140109-prod/lib/Bio/KBase/FunctionalOrthologPredictor/Client.pm line 147 Bio::KBase::FunctionalOrthologPredictor::Client::rank_pgene('Bio::KBase::FunctionalOrthologPredictor::Client=HASH(0x1f83908)', 'kb|g.3899.locus.6994', 'ARRAY(0x1f6b3d0)', 'ARRAY(0x1f6b400)') called at /kbase/deployments/20140109-prod/plbin/fop-rank-pgene.pl line 102

...

/ qc-get-drisee-compute -id "kb|mg.1" Return code from qc-get-drisee-compute: 255Error invoking method kbase_ids_to_external_ids HTTP status: 301 Moved Permanently Function invoked: kbase_ids_to_external_ids

Trace begun at /kbase/deployments/20140109-prod/lib/Bio/KBase/IDServer/Client.pm line 133 Bio::KBase::IDServer::Client::kbase_ids_to_external_ids('Bio::KBase::IDServer::Client=HASH(0x21eef40)', 'ARRAY(0x21e6920)') called at /kbase/deployments/20140109-prod/plbin/qc-get-drisee-compute.pl line 105

Should I create individual JIRA tickets for these, or are all they all just symptoms of some overall problem that you’re working on?

Thanks, Nomi _______________________________________________ Release-team mailing list [email protected] https://lists.kbase.us/mailman/listinfo/release-team