They are all at https://kbase.us/servicelogs User: kbasedev Pass: kbase4me2! I sent this out to the devel list a while ago, and went over it on the call. ---- Daniel Murphy-Olson Sr. Systems Administrator Computing, Environment and Life Sciences Division Argonne National Laboratory 630-252-0055<callto:630-252-0055> ________________________________ From: [email protected] [[email protected]] on behalf of Shane Canon [[email protected]] Sent: Tuesday, February 25, 2014 4:23 PM To: Nomi Harris Cc: [email protected] Subject: Re: [Release-team] Defunct services I will look through the nginx logs to verify. I don't know if we have them in an easy-to-access spot yet. --Shane On Feb 25, 2014, at 2:11 PM, Nomi Harris <[email protected]<mailto:[email protected]>> wrote: It would be handy if we had an URL for the server logs—maybe I will request that as a feature. In the meantime, how can I access the server logs? Nomi On Feb 25, 2014, at 1:51 PM, Robert Olson <[email protected]<mailto:[email protected]>> wrote: I don't know if we have one. On Feb 25, 2014, at 3:27 PM, Nomi Harris <[email protected]<mailto:[email protected]>> wrote: Good point, Bob. Can you remind me of the URL for checking the server logs? On Tue, Feb 25, 2014 at 1:24 PM, Robert Olson <[email protected]<mailto:[email protected]>> wrote: Have we checked the server logs to see if there are any users of these? On Feb 25, 2014, at 3:07 PM, Nomi Harris <[email protected]<mailto:[email protected]>> wrote: Ok, thanks for checking. Sounds like ERDB is still needed. So the revised list of services that can go is: feature_selection (fizzy) file_type_service genotype_phenotype experiment prom_service communities_qc regulation (regprecise) On Feb 25, 2014, at 12:54 PM, Shane Canon <[email protected]<mailto:[email protected]>> wrote: So ERDB may still be needed by translation and trees. --Shane root@t1:/kbase/deployments/20140214-prod/dev_container/modules# grep -i erdb */DEP* experiment/DEPENDENCIES:erdb_service prom_service/DEPENDENCIES:erdb_service translation/DEPENDENCIES:erdb_service trees/DEPENDENCIES:erdb_service On Feb 25, 2014, at 12:09 PM, "Brettin, Thomas S." <[email protected]<mailto:[email protected]>> wrote: I think the list is accurate. The only exception might be ERDB service. A recursive grep might be needed for that one. Sent from my Verizon Wireless 4G LTE DROID Nomi Harris <[email protected]<mailto:[email protected]>> wrote: Sure. We can follow up on it during tomorrow's devel call if needed. On Tue, Feb 25, 2014 at 11:57 AM, Shane Canon <[email protected]<mailto:[email protected]>> wrote: This is very helpful. Should we notify the devel list as well? --Shane On Feb 25, 2014, at 11:38 AM, Nomi Harris <[email protected]<mailto:[email protected]>> wrote:

I believe the following services are not currently supported and can be shut down (if they haven’t been already):

feature_selection (fizzy) file_type_services genotype_phenotype experiment prom_service communities_qc regulation (regprecise) erdb_service

Ccing the release team in case they have any adjustments to that list.

Nomi

On Feb 24, 2014, at 5:54 PM, Shane Canon <[email protected]<mailto:[email protected]>> wrote:

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So we can retire this service? Are there other services we can shutdown?

Shane

Sent from my iPhone

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On Feb 24, 2014, at 11:56 AM, Nomi Harris <[email protected]<mailto:[email protected]>> wrote:

I forgot to forward this to you. Ranjan says to leave the genotype/phenotype service out of this release. Nomi

Begin forwarded message:

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From: "Ranjan, Priya" <[email protected]<mailto:[email protected]>> Subject: Re: Genotype/Phenotype service repo? Date: February 18, 2014 at 2:59:58 PM PST To: Nomi Harris <[email protected]<mailto:[email protected]>>

Yes. Thanks. Ranjan

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On Feb 18, 2014, at 5:40 PM, "Nomi Harris" <[email protected]<mailto:[email protected]>> wrote:

Ok—so the release of IRIS we’re doing this week should not include Genotype/Phenotype commands, and I should remove it from the Services web page? Nomi

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On Feb 18, 2014, at 12:03 PM, Ranjan, Priya <[email protected]<mailto:[email protected]>> wrote:

Hi Nomi, Both these services are obsolete and their functionality are being incorporated into gwas service. I will request them to be deleted in few weeks. Thanks Ranjan

________________________________________ From: Nomi Harris [[email protected]<mailto:[email protected]>] Sent: Tuesday, February 18, 2014 3:00 PM To: [email protected]<mailto:[email protected]>; Ranjan, Priya Cc: [email protected]<mailto:[email protected]> Subject: Genotype/Phenotype service repo?

Hi Ranjan, What is the correct repo for the Genotype/Phenotype service? There’s a repo called genotype_phenotype, which hasn’t been updated since Sept. There’s one called genotype_phenotype_api, which I think is the current repo. The Master tab of the Services repo (https://docs.google.com/spreadsheet/ccc?key=0AriSbOyynCz1dDdJRHJBcGszaldlUE5...) claims that the repo is called geno_pheno_service, which I guess is just wrong. If genotype_phenotype_api is the live repo, then I would suggest deleting genotype_phenotype to avoid confusion. Thanks, Nomi

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