I’ve pushed the updated genome_annotation and kb_seed code needed for the new RAST2 integration and the updated CDM schema routines.
The genome annotation service will need to go onto a machine with at least 24GB of RAM, and also requires the download and installation of a kmer data file; I don’t know if we have a standard procedure for the installation of such tools.
The data directory is 32GB in size. Its location needs to be in the deployment configuration file; e.g:
[genome_annotation]
kmer_v2_data_directory = /data/Data.6
[GenomeAnnotation]
kmer_v2_data_directory = /data/Data.6
Both clauses there need to be included for now. The data to be installed is:
and unpacks into that Data.6 directory.
Let me know if you have any questions.
—bob