I finished the initial review of API and command line documentation.
All of the current docs have reasonably good coverage/descriptions, and properly deploy to webroot. However, the deployed documents for 'auth_service' and 'protein_info_service', as well as a couple of the dependent deployments, are not visible via:
http://140.221.84.191/services/docs/ . I'm not sure if this is a major problem or not.
These issues are also documented in the Services spreadsheet.
-Michael