Attendees: Tom, Steven, Keith, John-Marc, Ross, Matt, Chris, Bill, Keith, Ben, Pavel Agenda: - Phenotype data - Quarterly Reports & milestones - May Science review Phenotype Data - Improve Phenotype Data design spec to link to ModelSEED API in an easier. - will need to move all IDs to KBase space - Work with Bob & Ross to get the IDs correct - Chris will consume data under the assumption the IDs are all KBase - These are for Genomes and Features (i.e. Genes), don’t have media IDs yet - ID Server should be straightforward to convert MicrobesOnline to KBase - KBase Service to translate continuous data to boolean growth, Gavin Price - Vanilla FBA and Phenotype simulation Service up by end of month - Gapfilling & Gap Generation Services will take longer - need to sort out how to maintain long running jobs - should bring this up at next developers call - Can be run on cluster using something like “qSub” - would like to have this completed in May - doc on FBA service in KBase to be written by Chris - internal use for now - brainstorming doc - Sending out Ben’s plan Experiments & Strains - Focus on this after completing Phenotype data necessary for Feb Demo - Meet with more users to define scope - Create use cases beyond, fitness, transcriptomics. Synthetic biology, etc Quarterly Reports - Create initial report for Bob by mid April - Will send out the Microbes Report to the group by this Thursday - Need to talk to Bob & Adam about the divergence of our current tasks and previous - Steven: maybe an external source to fund integrating function prediction Science Review - Present Science Goals to set context - it’s assumed goals are all solid and they will inform how software is designed - Technical Leads for each sub-projects - Implementation plans - 10-20% background, 90-80% nuts and bolts on software - Tom will send out templates used during infrastructure review - Sheryas’ presentation is a good template Next Meeting: - Bill to present on Metabolic Map visualization using GLAMM - Chris will discuss FBA services based off doc he is preparing