Hi - I put together a similar script the other day that pulls a central store genome out to a typed-object file (as used by the annotate_genome script in the tutorial). It should be a straightforward exercise to modify it to create the exchange format instead. Script attached. Note that it does a reallocation of IDs; you wouldn't need to do this. --bob On Jun 18, 2012, at 1:50 PM, Keith Keller wrote:

Hi all,

Of course I thought of this just a few minutes after our call ended!

Is there an easy way to extract data out of the CS in the tab-delimited exchange format? I want to try to load KBase genomes into MO so that we can have more agreement between our genomes and genes.

--keith

-- Keith Keller [email protected] Physical Biosciences Division, Lawrence Berkeley National Lab _______________________________________________ Microbe mailing list [email protected] https://lists.kbase.us/mailman/listinfo/microbe