OK, the service is now visible at http://bio-data-1.mcs.anl.gov/services/fba BTW I tried checking out the code via git clone [email protected]:fbaServices.git but the module was empty; was that what you meant by the KBase git repo? On May 2, 2012, at 3:50 PM, Christopher Henry wrote:

I'm running on biologin-4.mcs.anl.gov:5000

-----Original Message----- From: Robert Olson [mailto:[email protected]] Sent: Wednesday, May 02, 2012 3:44 PM To: Christopher Henry Cc: 'Ben Bowen'; 'KBase Microbes List' Subject: Re: [Microbe] FBA and phenotype simulation tutorials

I have a proxy server that I redirect to the local bio machine running the service; this makes it available to the world. so if you let me know where you're running the service I can set up the redirection.

On May 2, 2012, at 3:36 PM, Christopher Henry wrote:

...

Well, initially, the service has to run on a computer in BIO environment until we've succeeded in deploying this thing in the cloud at the May integration meeting. Bob, how did you run the plackup services in the BIO environment?

-----Original Message----- From: Robert Olson [mailto:[email protected]] Sent: Wednesday, May 02, 2012 2:41 PM To: Christopher Henry Cc: 'Ben Bowen'; 'KBase Microbes List' Subject: Re: [Microbe] FBA and phenotype simulation tutorials

Should folks be using that biologin version or are you expecting them to run the service themselves? If the former we'll need to put the service behind the proxy since external access to that port will be blocked.

On May 2, 2012, at 12:03 AM, Christopher Henry wrote:

...

Hi Ben,

You should be able to run the service on any computer anywhere. I'll look into this tomorrow.

Chris

-----Original Message----- From: Ben Bowen [mailto:[email protected]] Sent: Tuesday, May 01, 2012 6:30 PM To: Robert Olson Cc: Christopher Henry; KBase Microbes List Subject: Re: [Microbe] FBA and phenotype simulation tutorials

Is this a port blocking problem? or am I doing something wrong? Tutorial code attached, and error transcript below.

localhost:Running_ModelSEED bpb$ perl testRunModelSeed.pl Error invoking runfba: 500 Can't connect to biologin-4.mcs.anl.gov:5000 (connect: Connection refused) at fbaServicesClient.pm line 57.

I assume that I need to run this from my kbase login (not my computer at LBL), but I just wanted to check and make sure.

Thanks,

Ben

-------------- Email: [email protected] Office: 510-486-5138 Cell: 480-225-2341 MS 84RO171, Lawrence Berkeley Lab

On Wed, Apr 25, 2012 at 9:29 PM, Robert Olson <[email protected]> wrote:

...

Would you like these added to the kbase.us tutorials pages?

On Apr 25, 2012, at 11:16 PM, Christopher Henry wrote:

Hello all,

Attached are two simple tutorials for the FBA and phenotype simulation services. The module is checked in to the fbaServices module in the KBase git repository. Note, I believe some more tweaking of the input and output datastructures will be needed, but this is pretty close.

Chris <runFBA tutorial.txt><simulatePhenotypes Tutorial.txt>_______________________________________________ Microbe mailing list [email protected] https://lists.kbase.us/mailman/listinfo/microbe

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