*07/16/2012: Microbes CallAttendees: Mike, Jason, Gavin, Matt, Bill, Tom Agenda 1) Demo update 2) Phenotype update 3) Microarrays 4) Tree update 5) Other issues 1) Demo update - On track for building core functionality by mid-August - Two major services need to be built - Phenotype reconciliation services - Tree services - Invite Steven Brenner’s Grad Student Mike Souza to KBase 2) Tree update by Mike Sneddon - Working with Fangfang, Terry and Bruce on exchange format - Common use cases - have some basic ones - please contact Mike - Haven’t heard back from Plants, sent an email to Shiran - will email Jerming and David Westen 3) Phenotype update from Gavin - Pulling data from Shewanella for all public and data ok’d by Duetschbauer - Excel worksheet that Ben Bowen put together that lists all environments associated with data - Waiting on Bruce et al to create loaders - Still some open questions on the data, working with Duestschbauer: - Strains with insertions in intergenic areas currently indistinguishable from wild type in our ER - Motility experiements - Missing data - Stereochemistry for compounds - Have come up with a couple changes to ER - add table to allow grouping by plate 4) Microarrays - Jason Baumohl working on Structured Microarray data - Matt will discuss some issues with Jason that he’d like to see 5) Other topics - UI work - KBase Labs - Python library location? Email dev list - August Build! *