Sorry I could not make the call, as it was an untenable time in Shanghai.

On Mon, 10 Sep 2012, Gavin A Price wrote:

The to-do list we started on in the meeting has been moved over to an excel style doc. Please use that one for
further updates. It's in the collection KBase Project/Microbes like the first doc.

-g

On 9/10/2012 10:55 AM, Gavin Price wrote:
      Agenda:

      - Make list of items, owners, and dates for stuff that needs to be done for the microbes demo
      - Quick discussion of PNNL proteomics data and owners for use cases
      - Dealing with uneven sampling of genomes

      On 9/10/2012 10:20 AM, Ben Bowen wrote:
            Agenda Item: For the microbes-demo, list specific items we need to cross off and when they
            need to be done by.
            --------------
            Email: BPBowen@lbl.gov
            Phone: (510) 214-6683
            MS 977-221, Lawrence Berkeley Lab
            Web: ms.lbl.gov


            On Mon, Sep 10, 2012 at 10:07 AM, Michael Sneddon <mwsneddon@lbl.gov> wrote:
                  One issue that came up last week is how we are going to deal with an uneven
                  sampling of sequences in KBase in which certain sub-families will likely be
                  vastly over/under represented.  This came up in the context of
                  visualizing/analyzing trees (where we would like to have some smart way to
                  collapse internal nodes so that half the tree displayed to a user isn't just
                  variants of e.coli).  Talking briefly to Paramvir though, this seems to be a
                  more general problem which will affect many aspects of data interpretation and
                  visualization in kbase.

This discussion will probably also be related to figuring out how to set up the "kbase" pipeline
for processing new sequences and adding the new annotations, trees, etc to the CDS.  I'm not sure
how high on the priority list this is now, but if there is time it might be worth discussing.
-michael



On Mon, Sep 10, 2012 at 9:25 AM, Gavin Price <gaprice@lbl.gov> wrote:
      Ready talk call in #: 1-866-740-1260
      code 4958182

      If Paramvir isn't calling in, I have the operator code and will start the conf.

      Please send any agenda items we need to discuss to me and I'll roll them up in an
      email slightly prior to the meeting.

      -g



      On 9/10/2012 9:19 AM, Paramvir Dehal wrote:
            We should still have one. Gavin, can you collect agenda items and send
            out the reminder email?

            Pavel, John-Marc and Bill are also at this conference.



            On Mon, Sep 10, 2012 at 7:46 AM, Gavin Price<gaprice@lbl.gov>  wrote:
                  Not sure if we're having one since paramvir is at a
                  conference.

                  -g


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