Hi Dylan, as discussed in the call, the M5nr currently does not have Pfam directly, but you'd need to use Uniprot (they have Pfam IDs). The FIGfams are only indirectly represented via the SEED subsystem annotations. best, Folker On Jan 10, 2013, at 12:03 PM, Dylan Chivian <[email protected]> wrote:

Great! Can you give us example calls for a Pfam query and a FIGfam query?

Thanks, - Dylan

On Thu, Jan 10, 2013 at 9:43 AM, Folker Meyer <[email protected]> wrote: Hi Dylan,

here is the url in KBase land:

http://kbase.us/services/communities/sequences/mgm4440036.3?data_type=ontolo...

On Jan 9, 2013, at 6:59 PM, Dylan Chivian <[email protected]> wrote:

...

hi guys,

for tomorrow,

1) i'd like to talk about how hard it would be for andreas or jared to add support for FIGfams, Pfam, and TIGRFAM to this method that Jared wrote during the hack-a-thon a year ago:

http://api.metagenomics.anl.gov/sequences/4447970.3/?type=ontology&seq=prote...

also, how hard would it be for andreas / jared to add this method to the KBase CommunitiesAPI?

2) please give us an update on the processing and access info for the hofmockel data so we can start playing with the biom data for the network analysis with pavel, sergei, and marcin.

Send an email to Kirsten asking to give you guys access.

Best, Folker

...

Thu 1/10, 9:30-10:00am PST / 11:30am-12:00pm CST 866-740-1260 Code: 4958182#

thanks, - dylan

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