I'm still thankfully not sick, so I can talk at 9:30 pst. Anyone else around this morning? As Dylan mentioned, the key thing we wanted to discuss is simply how to use the communities api to retrieve sequences by experiment and gene family, so perhaps it would be easier if I just discuss this with Andreas today. -michael On Thu, Jan 3, 2013 at 7:59 AM, Dylan Chivian <[email protected]> wrote:

i have a bad sore throat so can't participate today. if nothing else, andi and mike, can you talk with one another about gene sequence retrieval by gene family? the leader code is *8074 if you want to use the readytalk line.

thanks, - dylan

On Wed, Jan 2, 2013 at 2:44 PM, Dylan Chivian <[email protected]> wrote:

...

hi guys,

other than keith (who is not available), who is going to be able to participate in the communities call tomorrow? i'd like to talk about reimplementing the service that determines gene tree subfamily abundance from metagenome reads. there was a method that jared (i believe) wrote at the hack-a-thon last year that we could retrieve read sequences using args metagenome id and gene family id (which gene family types are supported?). does that still exist somewhere, and better yet, how hard would it be to port to andi's communities api?

also, can you send us any 16S and/or WGS metagenomes that have been loaded from the hofmockel runs? be nice to build our methods around those data.

Thu Jan 3rd, 9:30-10:00am PST / 11:30-12:00pm CST Readytalk: 866-740-1260 Code: 4958182#

thanks, - dylan