- Kbase-microcomm - mailman3.cels.anl.gov

Re: [Kbase-MicroComm] hack-a-thon dates
by Elizabeth M. Glass 12 Jan '12

12 Jan '12

Andreas/Folker, please correct me if I am wrong. Folker Meyer Andreas Wilke Jared Wilkening Kevin Keegan William Trimble Narayan Desai ----- Original Message ----- From: Dylan Chivian <dcchivian(a)lbl.gov> To: Elizabeth M. Glass <marland(a)mcs.anl.gov> Cc: kbase-microcomm(a)lists.kbase.us Sent: Thu, 12 Jan 2012 15:43:14 -0600 (CST) Subject: Re: [Kbase-MicroComm] hack-a-thon dates All right. We'll figure something out then. Who is coming? Thanks, - Dylan On Thu, Jan 12, 2012 at 12:47 PM, Elizabeth M. Glass <marland(a)mcs.anl.gov>wrote: > Dylan, > > The ANL communities team is booked and is scheduled to be there for the > full meeting. > > Elizabeth > > ----- Original Message ----- > From: Dylan Chivian <dcchivian(a)lbl.gov> > To: kbase-microcomm(a)lists.kbase.us > Sent: Thu, 12 Jan 2012 14:27:18 -0600 (CST) > Subject: Re: [Kbase-MicroComm] hack-a-thon dates > > Turns out we won't have networking in our new office until the end of > January at best. I'm assuming the lack of response to my question means > you haven't booked anything yet, so I'm going to move the hack-a-thon to > February. Doodle poll to follow. > > Thanks, > - Dylan > > > On Wed, Jan 11, 2012 at 12:20 PM, Dylan Chivian <dcchivian(a)lbl.gov> wrote: > > > Hi all, > > > > Do you all have your flights and hotels reserved? Are people going to be > > able to make the full meeting (Tue 24 9am - Thu 26 5pm)? > > > > Thanks, > > - Dylan > > > > > > _______________________________________________ > Kbase-microcomm mailing list > Kbase-microcomm(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/kbase-microcomm >

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Re: [Kbase-MicroComm] hack-a-thon dates
by Dylan Chivian 12 Jan '12

12 Jan '12

All right. We'll figure something out then. Who is coming? Thanks, - Dylan On Thu, Jan 12, 2012 at 12:47 PM, Elizabeth M. Glass <marland(a)mcs.anl.gov>wrote: > Dylan, > > The ANL communities team is booked and is scheduled to be there for the > full meeting. > > Elizabeth > > ----- Original Message ----- > From: Dylan Chivian <dcchivian(a)lbl.gov> > To: kbase-microcomm(a)lists.kbase.us > Sent: Thu, 12 Jan 2012 14:27:18 -0600 (CST) > Subject: Re: [Kbase-MicroComm] hack-a-thon dates > > Turns out we won't have networking in our new office until the end of > January at best. I'm assuming the lack of response to my question means > you haven't booked anything yet, so I'm going to move the hack-a-thon to > February. Doodle poll to follow. > > Thanks, > - Dylan > > > On Wed, Jan 11, 2012 at 12:20 PM, Dylan Chivian <dcchivian(a)lbl.gov> wrote: > > > Hi all, > > > > Do you all have your flights and hotels reserved? Are people going to be > > able to make the full meeting (Tue 24 9am - Thu 26 5pm)? > > > > Thanks, > > - Dylan > > > > > > _______________________________________________ > Kbase-microcomm mailing list > Kbase-microcomm(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/kbase-microcomm >

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Re: [Kbase-MicroComm] hack-a-thon dates
by Elizabeth M. Glass 12 Jan '12

12 Jan '12

Dylan, The ANL communities team is booked and is scheduled to be there for the full meeting. Elizabeth ----- Original Message ----- From: Dylan Chivian <dcchivian(a)lbl.gov> To: kbase-microcomm(a)lists.kbase.us Sent: Thu, 12 Jan 2012 14:27:18 -0600 (CST) Subject: Re: [Kbase-MicroComm] hack-a-thon dates Turns out we won't have networking in our new office until the end of January at best. I'm assuming the lack of response to my question means you haven't booked anything yet, so I'm going to move the hack-a-thon to February. Doodle poll to follow. Thanks, - Dylan On Wed, Jan 11, 2012 at 12:20 PM, Dylan Chivian <dcchivian(a)lbl.gov> wrote: > Hi all, > > Do you all have your flights and hotels reserved? Are people going to be > able to make the full meeting (Tue 24 9am - Thu 26 5pm)? > > Thanks, > - Dylan > >

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Re: [Kbase-MicroComm] hack-a-thon dates
by Andreas Wilke 12 Jan '12

12 Jan '12

Hi Dylan, yes we all have booked flights and hotel. Andreas On Jan 11, 2012, at 2:20 PM, Dylan Chivian wrote: > Hi all, > > Do you all have your flights and hotels reserved? Are people going to be able to make the full meeting (Tue 24 9am - Thu 26 5pm)? > > Thanks, > - Dylan > > _______________________________________________ > Kbase-microcomm mailing list > Kbase-microcomm(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/kbase-microcomm Andreas Wilke Argonne National Laboratory Mathematics and Computer Science Division Bldg. 240 , 4F8 9700 South Cass Avenue Argonne, IL 60439 (630) 252-3190 (phone) (630) 252-5986.(fax)

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Re: [Kbase-MicroComm] hack-a-thon dates
by Dylan Chivian 12 Jan '12

12 Jan '12

Turns out we won't have networking in our new office until the end of January at best. I'm assuming the lack of response to my question means you haven't booked anything yet, so I'm going to move the hack-a-thon to February. Doodle poll to follow. Thanks, - Dylan On Wed, Jan 11, 2012 at 12:20 PM, Dylan Chivian <dcchivian(a)lbl.gov> wrote: > Hi all, > > Do you all have your flights and hotels reserved? Are people going to be > able to make the full meeting (Tue 24 9am - Thu 26 5pm)? > > Thanks, > - Dylan > >

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hack-a-thon dates
by Dylan Chivian 11 Jan '12

11 Jan '12

Hi all, Do you all have your flights and hotels reserved? Are people going to be able to make the full meeting (Tue 24 9am - Thu 26 5pm)? Thanks, - Dylan

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Can't make microcomm call this week
by Dylan Chivian 10 Jan '12

10 Jan '12

Hi all, I have an all-day workshop on thu, so I won't be on the communities call this week. Thanks, - Dylan

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call notes 1/5/2012
by Dylan Chivian 05 Jan '12

05 Jan '12

Hi all, here's the result of today's Communities call between Andreas and I. We split our demos into the following subprojects: Demo 1: Experiment Design Wizard ============================ Subproject 1. Rarefaction OTUs / Proportion of Community, Suggested sequencing depth by technology (Andreas point) Subproject 2. Error calc / QA (Andreas point) Demo 2: Bioprospecting =================== Subproject 3. OTU / species abundance and gene family / fxnal category abundance (Andreas point) Subproject 4. Link OTUs to species (Dylan point) Subproject 5. Functional specialization by gene tree (Dylan point) These will be the projects subject to the design reviews and the focus of our hack-a-thon. We may be asking for your help putting together the workflow / dependency diagrams and mock-ups for these. The plan for the hack-a-thon is to build some inter-core glue and methods to achieve the goals of the demos. We expect that the CDM and persistent store revealed during the pre-release meeting on Jan 18-19th will not meet the needs of the Communities domain, and it will be incumbent upon us to identify what's missing and needs to be changed. We'll probably use the hack-a-thon to write prototypes for those methods that are missing (perhaps all of them!). I want to stress that these will be prototypes, and while we will do our best to conform to the architecture design and libraries built by infrastructure, we expect they will ultimately have to re-implement any methods we build during the hack-a-thon to match their paradigm. Therefore we agreed we don't want to spend all our time during the hack-a-thon perfecting them to match infrastructure's and instead should bang out as much ugly code that works as we can. One thing that remains undetermined is how much and what Communities data will live in the CDM, and how much will be accessed dynamically (sliced into the persistant store / cache) from the cores. We'll want to get that clarified soon and cemented at the meeting on the 18-19th. Thanks, - Dylan

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Re: [Kbase-MicroComm] [Microbe] February Users meeting
by Adam Paul Arkin 29 Nov '11

29 Nov '11

Sure...but board members can be vision folk.. Stakeholders need to have skin in the game. Please excuse any terseness or errors. This is sent from my mobile. On Nov 29, 2011, at 12:26 PM, "Elizabeth M. Glass" <marland(a)mcs.anl.gov> wrote: > From email chats with Bob and Brian, we would say yes, but would encourage folks to branch out to others. > > Adam - your thoughts? > > Elizabeth > > ----- Original Message ----- > From: Dylan Chivian <dcchivian(a)lbl.gov> > To: Elizabeth M. Glass <marland(a)mcs.anl.gov> > Cc: Paramvir Dehal <psdehal(a)lbl.gov>, Adam Arkin <aparkin(a)lbl.gov>, kbase-microcomm(a)lists.kbase.us, KBase Microbes List <Microbe(a)lists.kbase.us> > Sent: Tue, 29 Nov 2011 14:20:17 -0600 (CST) > Subject: Re: [Microbe] February Users meeting > > Can there be overlap between governance board and stakeholders? > > - dylan > > > On Tue, Nov 29, 2011 at 12:18 PM, Elizabeth M. Glass <marland(a)mcs.anl.gov>wrote: > >> Hi Dylan, >> >> We have a Google document in the Outreach collection that has a listing. >> Sadly, people have been very slow in providing this list. >> >> What was asked, was rather than us inviting arbitrary people from the BRCs >> and U Kbase projects, you as lead/co-lead provide a list of individuals >> that you think will form good collaborative power users/developers for >> KBase .... and are folks that will be enthusiastic about coming to the >> users meeting in February. >> >> I will inform the rest of the Outreach group of your invitations to >> Patrick and Steve. >> >> Elizabeth >> >> ----- Original Message ----- >> From: Dylan Chivian <dcchivian(a)lbl.gov> >> To: Paramvir Dehal <psdehal(a)lbl.gov>, Adam Arkin <aparkin(a)lbl.gov> >> Cc: kbase-microcomm(a)lists.kbase.us, KBase Microbes List < >> Microbe(a)lists.kbase.us> >> Sent: Tue, 29 Nov 2011 13:47:58 -0600 (CST) >> Subject: Re: [Microbe] February Users meeting >> >> Who is already on the list of targeted stakeholders? Where is it being >> maintained? How many stakeholders of each type should attend? I've >> invited Patrik D'haeseleer and Steve Singer, so that's 2 for Microbial >> Communities. >> >> Thanks, >> - Dylan >> >> >> On Tue, Nov 29, 2011 at 11:11 AM, Paramvir Dehal <psdehal(a)lbl.gov> wrote: >> >>> Hi guys, >>> >>> Kbase is planning on having a Users/Targeted Stakeholder Workshop on >>> Sunday, Feb 26th noon- 5pm. This is the day before the DOE 2012 >>> Genomic Science Meeting (26-29). Right now, the plan is to have about >>> 40 attendees and, at this point, I'm not sure how many Kbase Microbes >>> members will be asked to attend. >>> >>> Please let me know if you are planning on attending the DOE Genomics >>> Science meeting and hold off on making your travel arrangements until >>> I find out from Bob how many people from the Microbes group can come. >>> >>> Also, if you have any more suggestions of Targeted Stakeholders, today >>> is the last day to send them to me. >>> >>> Paramvir >>> _______________________________________________ >>> Microbe mailing list >>> Microbe(a)lists.kbase.us >>> https://lists.kbase.us/mailman/listinfo/microbe >>> >> >> >

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Re: [Kbase-MicroComm] [Microbe] February Users meeting
by Elizabeth M. Glass 29 Nov '11

29 Nov '11

>From email chats with Bob and Brian, we would say yes, but would encourage folks to branch out to others. Adam - your thoughts? Elizabeth ----- Original Message ----- From: Dylan Chivian <dcchivian(a)lbl.gov> To: Elizabeth M. Glass <marland(a)mcs.anl.gov> Cc: Paramvir Dehal <psdehal(a)lbl.gov>, Adam Arkin <aparkin(a)lbl.gov>, kbase-microcomm(a)lists.kbase.us, KBase Microbes List <Microbe(a)lists.kbase.us> Sent: Tue, 29 Nov 2011 14:20:17 -0600 (CST) Subject: Re: [Microbe] February Users meeting Can there be overlap between governance board and stakeholders? - dylan On Tue, Nov 29, 2011 at 12:18 PM, Elizabeth M. Glass <marland(a)mcs.anl.gov>wrote: > Hi Dylan, > > We have a Google document in the Outreach collection that has a listing. > Sadly, people have been very slow in providing this list. > > What was asked, was rather than us inviting arbitrary people from the BRCs > and U Kbase projects, you as lead/co-lead provide a list of individuals > that you think will form good collaborative power users/developers for > KBase .... and are folks that will be enthusiastic about coming to the > users meeting in February. > > I will inform the rest of the Outreach group of your invitations to > Patrick and Steve. > > Elizabeth > > ----- Original Message ----- > From: Dylan Chivian <dcchivian(a)lbl.gov> > To: Paramvir Dehal <psdehal(a)lbl.gov>, Adam Arkin <aparkin(a)lbl.gov> > Cc: kbase-microcomm(a)lists.kbase.us, KBase Microbes List < > Microbe(a)lists.kbase.us> > Sent: Tue, 29 Nov 2011 13:47:58 -0600 (CST) > Subject: Re: [Microbe] February Users meeting > > Who is already on the list of targeted stakeholders? Where is it being > maintained? How many stakeholders of each type should attend? I've > invited Patrik D'haeseleer and Steve Singer, so that's 2 for Microbial > Communities. > > Thanks, > - Dylan > > > On Tue, Nov 29, 2011 at 11:11 AM, Paramvir Dehal <psdehal(a)lbl.gov> wrote: > > > Hi guys, > > > > Kbase is planning on having a Users/Targeted Stakeholder Workshop on > > Sunday, Feb 26th noon- 5pm. This is the day before the DOE 2012 > > Genomic Science Meeting (26-29). Right now, the plan is to have about > > 40 attendees and, at this point, I'm not sure how many Kbase Microbes > > members will be asked to attend. > > > > Please let me know if you are planning on attending the DOE Genomics > > Science meeting and hold off on making your travel arrangements until > > I find out from Bob how many people from the Microbes group can come. > > > > Also, if you have any more suggestions of Targeted Stakeholders, today > > is the last day to send them to me. > > > > Paramvir > > _______________________________________________ > > Microbe mailing list > > Microbe(a)lists.kbase.us > > https://lists.kbase.us/mailman/listinfo/microbe > > > >

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