- Kbase-microcomm - mailman3.cels.anl.gov

we are on the call. if you want to sync up, now might be a good time
by Folker Meyer 06 Feb '14

06 Feb '14

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Re: [Kbase-MicroComm] Load on Communities API
by Wilke, Andreas 27 Jan '14

27 Jan '14

Hi Dylan, There are multiple components involved from Client to Webserver and File system. Performance tuning is a critical step in this process and needs time. Andreas On Jan 27, 2014, at 11:25 AM, Dylan Chivian <dcchivian(a)lbl.gov> wrote: > Hi all, > > I'm wondering what is the requirement for support of simultaneous load on the Communities API? For example, it appears that more than about 4 simultaneous requests to the "matrix" method causes the system to drag. Is this tunable? Is it a question of adding threads to the MG-RAST services, or is the issue lower level, say at the SHOCK level? > > Thanks, > - Dylan > > _______________________________________________ > Kbase-microcomm mailing list > Kbase-microcomm(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/kbase-microcomm

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Load on Communities API
by Dylan Chivian 27 Jan '14

27 Jan '14

Hi all, I'm wondering what is the requirement for support of simultaneous load on the Communities API? For example, it appears that more than about 4 simultaneous requests to the "matrix" method causes the system to drag. Is this tunable? Is it a question of adding threads to the MG-RAST services, or is the issue lower level, say at the SHOCK level? Thanks, - Dylan

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Re: [Kbase-MicroComm] today's call
by Dylan Chivian 14 Nov '13

14 Nov '13

here's the JBEI rice straw compost enrichment metagenome paper http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0077985 On Thu, Nov 14, 2013 at 12:01 PM, Folker Meyer <folker(a)anl.gov> wrote: > we are on the call already..... > > waiting for you > On Nov 14, 2013, at 1:59 PM, Dylan Chivian <dcchivian(a)lbl.gov> wrote: > > > Hi guys, > > > > if Adam's line > > > > 866-740-1260, pc 4958182, chair code *8074# (folker only) > > > > isn't available, we can use mine > > > > 866-740-1260 pc 4818225# > > > > Here's the google doc for the communities narrative. Please let me know > if you don't have access. > > > > > https://docs.google.com/a/lbl.gov/document/d/1eV-vBDuFDlFcsIy7PV7qSK9nz6I11… > > > > Thanks, > > - Dylan > > _______________________________________________ > > Kbase-microcomm mailing list > > Kbase-microcomm(a)lists.kbase.us > > https://lists.kbase.us/mailman/listinfo/kbase-microcomm > >

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Re: [Kbase-MicroComm] today's call
by Folker Meyer 14 Nov '13

14 Nov '13

we are on the call already..... waiting for you On Nov 14, 2013, at 1:59 PM, Dylan Chivian <dcchivian(a)lbl.gov> wrote: > Hi guys, > > if Adam's line > > 866-740-1260, pc 4958182, chair code *8074# (folker only) > > isn't available, we can use mine > > 866-740-1260 pc 4818225# > > Here's the google doc for the communities narrative. Please let me know if you don't have access. > > https://docs.google.com/a/lbl.gov/document/d/1eV-vBDuFDlFcsIy7PV7qSK9nz6I11… > > Thanks, > - Dylan > _______________________________________________ > Kbase-microcomm mailing list > Kbase-microcomm(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/kbase-microcomm

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today's call
by Dylan Chivian 14 Nov '13

14 Nov '13

Hi guys, if Adam's line 866-740-1260, pc 4958182, chair code *8074# (folker only) isn't available, we can use mine 866-740-1260 pc 4818225# Here's the google doc for the communities narrative. Please let me know if you don't have access. https://docs.google.com/a/lbl.gov/document/d/1eV-vBDuFDlFcsIy7PV7qSK9nz6I11… Thanks, - Dylan

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call today
by Dylan Chivian 07 Nov '13

07 Nov '13

Hi all, I started a google doc where we can consolidate our plans for the Communities Narratives. So far it's just a collation of the notes from Adam and Rick with our proposals. We should discuss the planning bullet points and record our decisions in this document. https://docs.google.com/a/lbl.gov/document/d/1eV-vBDuFDlFcsIy7PV7qSK9nz6I11… Folker, which number do you want to use for the call? If the usual one that Adam owns 866-740-1260, pc 4958182, chair code *8074# (folker only) is busy, we can switch over to mine 866-740-1260, pc 4818225# Thanks, - Dylan

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no call today
by Dylan Chivian 26 Sep '13

26 Sep '13

I'm on travel. Next call will be Oct. 17th. Lets use email for any discussion and planning for the SAC. Thanks, - Dylan

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Re: [Kbase-MicroComm] call today?
by Dylan Chivian 19 Sep '13

19 Sep '13

OK. Hanging up. We REALLY have to talk about 1. SAC plans / demo / slides 2. Communities Typed Object design, including MetagenomeAnnotation. It's not enough for us to hear about it through the grapevine. We need to be involved in the design. Which members of your team are working on it? 3. Implications of the MG-RAST RESTful API change on the rest of KBase communities (as far as I can tell, they're the same API). The surprise change broke some of our code. We need warning before everything is replaced! We're talking with Andreas now about how to handle the loss of the abundanceprofile and sequences methods, but it's taking cycles we really don't have to spare right now. Perhaps as a stopgap you could restore those methods? Thanks, - Dylan On Thu, Sep 19, 2013 at 12:08 PM, Dylan Chivian <dcchivian(a)lbl.gov> wrote: > I'll give it 5 more minutes. > > Thanks, > - Dylan > > > > On Thu, Sep 19, 2013 at 12:01 PM, Dylan Chivian <dcchivian(a)lbl.gov> wrote: > >> I'm here. >> >> Thanks, >> - Dylan >> >> >> >> On Thu, Sep 19, 2013 at 11:45 AM, Dylan Chivian <dcchivian(a)lbl.gov>wrote: >> >>> ... also want to discuss MetagenomeAnnotation object and any other >>> objects you are thinking of adding to the workspace. Also, the new RESTful >>> API. >>> >>> Thanks, >>> - Dylan >>> >>> >>> >>> On Thu, Sep 19, 2013 at 11:44 AM, Dylan Chivian <dcchivian(a)lbl.gov>wrote: >>> >>>> Hi Folker and Andreas, >>>> >>>> are you still on travel? I'd like to discuss SAC plans / demos / slide >>>> decks now since I'll be out of town Sept 24-Oct 11. >>>> >>>> 866-740-1260, pc 4958182 >>>> >>>> Thanks, >>>> - Dylan >>>> >>>> >>> >> >

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Re: [Kbase-MicroComm] call today?
by Dylan Chivian 19 Sep '13

19 Sep '13

I'll give it 5 more minutes. Thanks, - Dylan On Thu, Sep 19, 2013 at 12:01 PM, Dylan Chivian <dcchivian(a)lbl.gov> wrote: > I'm here. > > Thanks, > - Dylan > > > > On Thu, Sep 19, 2013 at 11:45 AM, Dylan Chivian <dcchivian(a)lbl.gov> wrote: > >> ... also want to discuss MetagenomeAnnotation object and any other >> objects you are thinking of adding to the workspace. Also, the new RESTful >> API. >> >> Thanks, >> - Dylan >> >> >> >> On Thu, Sep 19, 2013 at 11:44 AM, Dylan Chivian <dcchivian(a)lbl.gov>wrote: >> >>> Hi Folker and Andreas, >>> >>> are you still on travel? I'd like to discuss SAC plans / demos / slide >>> decks now since I'll be out of town Sept 24-Oct 11. >>> >>> 866-740-1260, pc 4958182 >>> >>> Thanks, >>> - Dylan >>> >>> >> >

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