- Kbase-microcomm - mailman3.cels.anl.gov

Re: [Kbase-MicroComm] running late
by Andreas Wilke 25 Oct '12

25 Oct '12

I have problems dialing in. I get:" The number you have dialed is currently not in use" On Oct 25, 2012, at 11:13 AM, Dylan Chivian <dcchivian(a)lbl.gov> wrote: > let's do the call at 9:40 > > 800-857-4089, passcode: 38758# > > thanks, > - dylan > > _______________________________________________ > Kbase-microcomm mailing list > Kbase-microcomm(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/kbase-microcomm Andreas Wilke Argonne National Laboratory Mathematics and Computer Science Division Bldg. 240 , 4F8 9700 South Cass Avenue Argonne, IL 60439 (630) 252-3190 (phone) (630) 252-5986.(fax)

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Re: [Kbase-MicroComm] running late
by Folker Meyer 25 Oct '12

25 Oct '12

Ok -- Sent from mobile device On Oct 25, 2012, at 11:14, Dylan Chivian <dcchivian(a)lbl.gov> wrote: > let's do the call at 9:40 > > 800-857-4089, passcode: 38758# > > thanks, > - dylan > > _______________________________________________ > Kbase-microcomm mailing list > Kbase-microcomm(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/kbase-microcomm

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running late
by Dylan Chivian 25 Oct '12

25 Oct '12

let's do the call at 9:40 800-857-4089, passcode: 38758# thanks, - dylan

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no call today
by Andreas Wilke 11 Oct '12

11 Oct '12

Hi, I have to cancel the conference call today. Folker is sick. Andreas

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Reminder: No call tomorrow
by Andreas Wilke 05 Sep '12

05 Sep '12

This is a reminder that there is no conference call tomorrow. Please mark this in your calendars. Next call will be next Thursday 09/13. Andreas Andreas Wilke Argonne National Laboratory Mathematics and Computer Science Division Bldg. 240 , 4F8 9700 South Cass Avenue Argonne, IL 60439 (630) 252-3190 (phone) (630) 252-5986.(fax)

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Re: [Kbase-MicroComm] [KBase-Plants] metacommunities tomorrow
by Cottingham, Robert W. 17 Aug '12

17 Aug '12

Ok then, same bat time. Same bat channel. www.readytalk.com Conference Phone Number: 866.740.1260 Access Code: 4958182 -----Original Message----- From: Jer-Ming Chia [mailto:[email protected]] Sent: Friday, August 17, 2012 12:29 PM To: Cottingham, Robert W. Cc: Ware, Doreen; Nomi Harris; plants-domain(a)lists.kbase.us; DCChivian(a)lbl.gov; Folker Meyer; kbase-microcomm(a)lists.kbase.us; Andreas Wilke (wilke(a)mcs.anl.gov) Subject: Re: [KBase-Plants] metacommunities tomorrow Hi Bob, Yes. We @ CSHL plan to dial in. Jer-Ming On Aug 17, 2012, at 12:27 PM, "Cottingham, Robert W." <cottinghamrw(a)ornl.gov> wrote: > Will anyone call into ReadyTalk for the Microbial Communities storyboard today? I have heard nothing back. > > -Bob > > -----Original Message----- > From: Cottingham, Robert W. > Sent: Thursday, August 16, 2012 5:13 PM > To: 'Ware, Doreen'; Nomi Harris > Cc: plants-domain(a)lists.kbase.us; DCChivian(a)lbl.gov; Folker Meyer > Subject: RE: metacommunities tomorrow > > Yes, we will do the same ReadyTalk as today. > > Dylan and Folker, if there are others calling in let them know: > > www.readytalk.com > Conference Phone Number: 866.740.1260 Access Code: 4958182 > > > -----Original Message----- > From: Ware, Doreen [mailto:[email protected]] > Sent: Thursday, August 16, 2012 3:57 PM > To: Cottingham, Robert W.; Nomi Harris > Cc: plants-domain(a)lists.kbase.us > Subject: metacommunities tomorrow > > Bob and Nomi, > > Can you confirm that you will set up ready talk tomorrow for the meta-communities talk? > > Doreen > > -----Original Message----- > From: Cottingham, Robert W. [mailto:[email protected]] > Sent: Thursday, August 16, 2012 12:29 PM > To: Ware, Doreen; Nomi Harris; Ranjan, Priya; Jer-Ming Chia; Sergei Maslov; michael.schatz(a)gmail.com; Weston, David; Pasternak, Shiran; shinjae(a)gmail.com; Dantong Yu (dantongyu(a)gmail.com) Gurtowski, James; Thomason, James; Christopher Scott Henry (chenry(a)mcs.anl.gov) samseaver(a)gmail.com; Kumari, Sunita > Subject: RE: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) > > Please email me the slides. Who has them? Is it Mike? > > Thanks, > -Bob > > -----Original Message----- > From: Ware, Doreen [mailto:[email protected]] > Sent: Thursday, August 16, 2012 12:14 PM > To: Cottingham, Robert W.; Nomi Harris; Ranjan, Priya; Jer-Ming Chia; Sergei Maslov; michael.schatz(a)gmail.com; Weston, David; Pasternak, Shiran; shinjae(a)gmail.com; Dantong Yu (dantongyu(a)gmail.com) Gurtowski, James; Thomason, James; Christopher Scott Henry (chenry(a)mcs.anl.gov) samseaver(a)gmail.com; Kumari, Sunita > Subject: RE: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) > > Thanks Bob. > > > -----Original Message----- > From: Cottingham, Robert W. [mailto:[email protected]] > Sent: Thursday, August 16, 2012 12:05 PM > To: Nomi Harris; Ranjan, Priya; Jer-Ming Chia; Sergei Maslov; michael.schatz(a)gmail.com; Ware, Doreen; Weston, David; Pasternak, Shiran; shinjae(a)gmail.com; Dantong Yu (dantongyu(a)gmail.com) Gurtowski, James; Thomason, James; Christopher Scott Henry (chenry(a)mcs.anl.gov) samseaver(a)gmail.com; Kumari, Sunita > Subject: RE: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) > > We are doing this on ReadyTalk > www.readytalk.com > Conference Phone Number: 866.740.1260 > Access Code: 4958182 > > I am going to start up shortly. > > -Bob > > -----Original Message----- > From: Nomi Harris [mailto:[email protected]] > Sent: Thursday, August 16, 2012 11:57 AM > To: Cottingham, Robert W. > Subject: Fwd: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) > >>>>> From: Michael Schatz [michael.schatz(a)gmail.com] >>>>> Sent: Thursday, August 16, 2012 3:08 AM >>>>> Subject: Re: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) >>>>> >>>>> I posted the draft of our storyboard presentation to the dropbox in: >>>>> KBaseTeam->Plants->18mthStoryBoards > > Begin forwarded message: > >> From: "Ranjan, Priya" <ranjanp(a)ornl.gov> >> Subject: RE: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) >> Date: August 16, 2012 8:47:41 AM PDT >> To: Jer-Ming Chia <chia(a)cshl.edu>, Sergei Maslov <maslov(a)bnl.gov> >> Cc: Michael Schatz <michael.schatz(a)gmail.com>, "Ware, Doreen" <ware(a)cshl.edu>, "Weston, David" <westondj(a)ornl.gov>, "Pasternak, Shiran" <pasterna(a)cshl.edu>, Shinjae Yoo <sjyoo(a)bnl.gov>, Dantong Yu <dtyu(a)bnl.gov>, "Gurtowski, James" <gurtowsk(a)cshl.edu>, "Thomason, James" <thomason(a)cshl.edu>, "Christopher ScottHenry (chenry(a)mcs.anl.gov)" <chenry(a)mcs.anl.gov>, Sam Seaver <samseaver(a)gmail.com>, "Kumari, Sunita" <kumari(a)cshl.edu>, Nomi Harris <nlharris(a)lbl.gov> >> >> Hi Jer-Ming >> >> I have a modified version. Please merge this as well. >> >> Thanks >> Ranjan >> >> ________________________________________ >> From: Jer-Ming Chia [chia(a)cshl.edu] >> Sent: Thursday, August 16, 2012 10:47 AM >> To: Sergei Maslov >> Cc: Michael Schatz; Ware, Doreen; Weston, David; Pasternak, Shiran; Shinjae Yoo; Dantong Yu; Gurtowski, James; Thomason, James; Christopher ScottHenry (chenry(a)mcs.anl.gov) Sam Seaver; Kumari, Sunita; Ranjan, Priya; Nomi Harris >> Subject: Re: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) >> >> Thanks Sergei. >> >> I've updated the "PlantsStoryBoard.merged.pptx" file in the dropbox and also placed your file in the folder. >> >> Best, >> Jer-Ming >> >> On Aug 16, 2012, at 10:40 AM, Sergei Maslov <maslov(a)bnl.gov> >> wrote: >> >>> Hi all, >>> >>> My slides are attached. >>> >>> Sergei >>> >>> On 8/16/2012 9:00 AM, Jer-Ming Chia wrote: >>>> Hey Mike, >>>> >>>> I started a new merged ppt that includes Ranjan's slides in your deck. Nothing clobbered. >>>> >>>> Looks good, we just need Sergei's slides and we're good. >>>> >>>> -Jerm >>>> >>>> >>>> >>>> On Aug 16, 2012, at 3:40 AM, "Ranjan, Priya" <ranjanp(a)ornl.gov> wrote: >>>> >>>>> I also made an overview slide of G2P but then I saw Mike also has a similar slide. >>>>> Please add if I have missed something. >>>>> >>>>> My dropbox is full. Somehow I can receive updates but can't add files. So I am sending this as an attachment. >>>>> >>>>> ________________________________________ >>>>> From: Michael Schatz [michael.schatz(a)gmail.com] >>>>> Sent: Thursday, August 16, 2012 3:08 AM >>>>> To: Jer-Ming Chia >>>>> Cc: Ware, Doreen; Sergei Maslov; Ranjan, Priya; Weston, David; Pasternak, Shiran; Shinjae Yoo; Dantong Yu; Gurtowski, James; Thomason, James; Christopher ScottHenry (chenry(a)mcs.anl.gov) Sam Seaver; Kumari, Sunita; Nomi Harris >>>>> Subject: Re: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) >>>>> >>>>> I posted the draft of our storyboard presentation to the dropbox in: >>>>> KBaseTeam->Plants->18mthStoryBoards >>>>> >>>>> Sergie, Ranjan: please add in your final updates to your sections. >>>>> >>>>> Doreen, David, et al: What (if anything) do we want to say about the metabolic modeling? Do you have any final comments we want to make, especially for our vision past the 18 month demo? >>>>> >>>>> To avoid clobbering each other, please copy and rename the slide deck to have just your sections. I'll do the final merge at 9:15a PST (12:15p EST). >>>>> >>>>> Thanks! >>>>> >>>>> Mike >>>>> >>>>> >>>>> On Wed, Aug 15, 2012 at 8:44 PM, Michael Schatz <michael.schatz(a)gmail.com<mailto:[email protected]>> wrote: >>>>> I'll work on the presentation tonight following Paramvir's example in dropbox as 081511Dehal Microbes Storyborad. Let's plan to sync at 9am PST / noon EST to finalize the slide deck. >>>>> >>>>> Sergei- I'll include your figures in the talk. Please send me any other figures or notes you want to include. >>>>> >>>>> Ranjan- can you prepare slides with screen shots of the Manhattan plots and any other visual elements you want to show? >>>>> >>>>> Thanks! >>>>> >>>>> Mike >>>>> >>>>> >>>>> On Wed, Aug 15, 2012 at 8:17 AM, Jer-Ming Chia <chia(a)cshl.edu<mailto:[email protected]>> wrote: >>>>> Hello, >>>>> >>>>> Here's a dropbox location that we can use for the materials: >>>>> >>>>> KBaseTeam->Plants->18mthStoryBoards >>>>> >>>>> Best, >>>>> Jerm >>>>> >>>>> >>>>> On Aug 15, 2012, at 9:05 AM, "Ware, Doreen" <ware(a)cshl.edu<mailto:[email protected]>> wrote: >>>>> >>>>>> Hi Sergei, Mike, Ranjan and Jerm, >>>>>> >>>>>> Mike and Ranjan have started the "Plant storyboard 18 month" >>>>>> >>>>>> >>>>>> https://docs.google.com/document/d/1j_FaxkQJO25AeKQmQlfMnasItGWv_mA6gnsWgau… >>>>>> >>>>>> Sergei please add your network material to the doc by 11:00 today. I have asked Jerm to review the material. >>>>>> >>>>>> Jerm will be arrange a time to meet with you today if he has any questions or if you would like to go through your demo with him, please arrange a time. >>>>>> >>>>>> For tomorrow, I suggest that any powerpoints be in a Kbase dropbox this way if they will be using one computer locally it will be available. Jerm will coordinate this with Nomi and send more today. >>>>>> >>>>>> Doreen >>>>> >>>>> >>>>> <2012-08-16PR.pptx> >>>> . >>>> >>> >>> >>> -- >>> Dr. Sergei Maslov, >>> Department of Biology, >>> Brookhaven National Laboratory, >>> Upton, New York, 11973 >>> Tel: (631) 344-3742; >>> FAX: (631) 344-3407 >>> E@mail: maslov(a)bnl.gov >>> WWW: http://www.cmth.bnl.gov/~maslov >>> >>> <Networks_storyboard.pptx> >> > _______________________________________________ > Plants-domain mailing list > Plants-domain(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/plants-domain

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Re: [Kbase-MicroComm] [KBase-Plants] metacommunities tomorrow
by Jer-Ming Chia 17 Aug '12

17 Aug '12

Hi Bob, Yes. We @ CSHL plan to dial in. Jer-Ming On Aug 17, 2012, at 12:27 PM, "Cottingham, Robert W." <cottinghamrw(a)ornl.gov> wrote: > Will anyone call into ReadyTalk for the Microbial Communities storyboard today? I have heard nothing back. > > -Bob > > -----Original Message----- > From: Cottingham, Robert W. > Sent: Thursday, August 16, 2012 5:13 PM > To: 'Ware, Doreen'; Nomi Harris > Cc: plants-domain(a)lists.kbase.us; DCChivian(a)lbl.gov; Folker Meyer > Subject: RE: metacommunities tomorrow > > Yes, we will do the same ReadyTalk as today. > > Dylan and Folker, if there are others calling in let them know: > > www.readytalk.com > Conference Phone Number: 866.740.1260 > Access Code: 4958182 > > > -----Original Message----- > From: Ware, Doreen [mailto:[email protected]] > Sent: Thursday, August 16, 2012 3:57 PM > To: Cottingham, Robert W.; Nomi Harris > Cc: plants-domain(a)lists.kbase.us > Subject: metacommunities tomorrow > > Bob and Nomi, > > Can you confirm that you will set up ready talk tomorrow for the meta-communities talk? > > Doreen > > -----Original Message----- > From: Cottingham, Robert W. [mailto:[email protected]] > Sent: Thursday, August 16, 2012 12:29 PM > To: Ware, Doreen; Nomi Harris; Ranjan, Priya; Jer-Ming Chia; Sergei Maslov; michael.schatz(a)gmail.com; Weston, David; Pasternak, Shiran; shinjae(a)gmail.com; Dantong Yu (dantongyu(a)gmail.com) Gurtowski, James; Thomason, James; Christopher Scott Henry (chenry(a)mcs.anl.gov) samseaver(a)gmail.com; Kumari, Sunita > Subject: RE: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) > > Please email me the slides. Who has them? Is it Mike? > > Thanks, > -Bob > > -----Original Message----- > From: Ware, Doreen [mailto:[email protected]] > Sent: Thursday, August 16, 2012 12:14 PM > To: Cottingham, Robert W.; Nomi Harris; Ranjan, Priya; Jer-Ming Chia; Sergei Maslov; michael.schatz(a)gmail.com; Weston, David; Pasternak, Shiran; shinjae(a)gmail.com; Dantong Yu (dantongyu(a)gmail.com) Gurtowski, James; Thomason, James; Christopher Scott Henry (chenry(a)mcs.anl.gov) samseaver(a)gmail.com; Kumari, Sunita > Subject: RE: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) > > Thanks Bob. > > > -----Original Message----- > From: Cottingham, Robert W. [mailto:[email protected]] > Sent: Thursday, August 16, 2012 12:05 PM > To: Nomi Harris; Ranjan, Priya; Jer-Ming Chia; Sergei Maslov; michael.schatz(a)gmail.com; Ware, Doreen; Weston, David; Pasternak, Shiran; shinjae(a)gmail.com; Dantong Yu (dantongyu(a)gmail.com) Gurtowski, James; Thomason, James; Christopher Scott Henry (chenry(a)mcs.anl.gov) samseaver(a)gmail.com; Kumari, Sunita > Subject: RE: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) > > We are doing this on ReadyTalk > www.readytalk.com > Conference Phone Number: 866.740.1260 > Access Code: 4958182 > > I am going to start up shortly. > > -Bob > > -----Original Message----- > From: Nomi Harris [mailto:[email protected]] > Sent: Thursday, August 16, 2012 11:57 AM > To: Cottingham, Robert W. > Subject: Fwd: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) > >>>>> From: Michael Schatz [michael.schatz(a)gmail.com] >>>>> Sent: Thursday, August 16, 2012 3:08 AM >>>>> Subject: Re: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) >>>>> >>>>> I posted the draft of our storyboard presentation to the dropbox in: >>>>> KBaseTeam->Plants->18mthStoryBoards > > Begin forwarded message: > >> From: "Ranjan, Priya" <ranjanp(a)ornl.gov> >> Subject: RE: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) >> Date: August 16, 2012 8:47:41 AM PDT >> To: Jer-Ming Chia <chia(a)cshl.edu>, Sergei Maslov <maslov(a)bnl.gov> >> Cc: Michael Schatz <michael.schatz(a)gmail.com>, "Ware, Doreen" <ware(a)cshl.edu>, "Weston, David" <westondj(a)ornl.gov>, "Pasternak, Shiran" <pasterna(a)cshl.edu>, Shinjae Yoo <sjyoo(a)bnl.gov>, Dantong Yu <dtyu(a)bnl.gov>, "Gurtowski, James" <gurtowsk(a)cshl.edu>, "Thomason, James" <thomason(a)cshl.edu>, "Christopher ScottHenry (chenry(a)mcs.anl.gov)" <chenry(a)mcs.anl.gov>, Sam Seaver <samseaver(a)gmail.com>, "Kumari, Sunita" <kumari(a)cshl.edu>, Nomi Harris <nlharris(a)lbl.gov> >> >> Hi Jer-Ming >> >> I have a modified version. Please merge this as well. >> >> Thanks >> Ranjan >> >> ________________________________________ >> From: Jer-Ming Chia [chia(a)cshl.edu] >> Sent: Thursday, August 16, 2012 10:47 AM >> To: Sergei Maslov >> Cc: Michael Schatz; Ware, Doreen; Weston, David; Pasternak, Shiran; Shinjae Yoo; Dantong Yu; Gurtowski, James; Thomason, James; Christopher ScottHenry (chenry(a)mcs.anl.gov) Sam Seaver; Kumari, Sunita; Ranjan, Priya; Nomi Harris >> Subject: Re: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) >> >> Thanks Sergei. >> >> I've updated the "PlantsStoryBoard.merged.pptx" file in the dropbox and also placed your file in the folder. >> >> Best, >> Jer-Ming >> >> On Aug 16, 2012, at 10:40 AM, Sergei Maslov <maslov(a)bnl.gov> >> wrote: >> >>> Hi all, >>> >>> My slides are attached. >>> >>> Sergei >>> >>> On 8/16/2012 9:00 AM, Jer-Ming Chia wrote: >>>> Hey Mike, >>>> >>>> I started a new merged ppt that includes Ranjan's slides in your deck. Nothing clobbered. >>>> >>>> Looks good, we just need Sergei's slides and we're good. >>>> >>>> -Jerm >>>> >>>> >>>> >>>> On Aug 16, 2012, at 3:40 AM, "Ranjan, Priya" <ranjanp(a)ornl.gov> wrote: >>>> >>>>> I also made an overview slide of G2P but then I saw Mike also has a similar slide. >>>>> Please add if I have missed something. >>>>> >>>>> My dropbox is full. Somehow I can receive updates but can't add files. So I am sending this as an attachment. >>>>> >>>>> ________________________________________ >>>>> From: Michael Schatz [michael.schatz(a)gmail.com] >>>>> Sent: Thursday, August 16, 2012 3:08 AM >>>>> To: Jer-Ming Chia >>>>> Cc: Ware, Doreen; Sergei Maslov; Ranjan, Priya; Weston, David; Pasternak, Shiran; Shinjae Yoo; Dantong Yu; Gurtowski, James; Thomason, James; Christopher ScottHenry (chenry(a)mcs.anl.gov) Sam Seaver; Kumari, Sunita; Nomi Harris >>>>> Subject: Re: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) >>>>> >>>>> I posted the draft of our storyboard presentation to the dropbox in: >>>>> KBaseTeam->Plants->18mthStoryBoards >>>>> >>>>> Sergie, Ranjan: please add in your final updates to your sections. >>>>> >>>>> Doreen, David, et al: What (if anything) do we want to say about the metabolic modeling? Do you have any final comments we want to make, especially for our vision past the 18 month demo? >>>>> >>>>> To avoid clobbering each other, please copy and rename the slide deck to have just your sections. I'll do the final merge at 9:15a PST (12:15p EST). >>>>> >>>>> Thanks! >>>>> >>>>> Mike >>>>> >>>>> >>>>> On Wed, Aug 15, 2012 at 8:44 PM, Michael Schatz <michael.schatz(a)gmail.com<mailto:[email protected]>> wrote: >>>>> I'll work on the presentation tonight following Paramvir's example in dropbox as 081511Dehal Microbes Storyborad. Let's plan to sync at 9am PST / noon EST to finalize the slide deck. >>>>> >>>>> Sergei- I'll include your figures in the talk. Please send me any other figures or notes you want to include. >>>>> >>>>> Ranjan- can you prepare slides with screen shots of the Manhattan plots and any other visual elements you want to show? >>>>> >>>>> Thanks! >>>>> >>>>> Mike >>>>> >>>>> >>>>> On Wed, Aug 15, 2012 at 8:17 AM, Jer-Ming Chia <chia(a)cshl.edu<mailto:[email protected]>> wrote: >>>>> Hello, >>>>> >>>>> Here's a dropbox location that we can use for the materials: >>>>> >>>>> KBaseTeam->Plants->18mthStoryBoards >>>>> >>>>> Best, >>>>> Jerm >>>>> >>>>> >>>>> On Aug 15, 2012, at 9:05 AM, "Ware, Doreen" <ware(a)cshl.edu<mailto:[email protected]>> wrote: >>>>> >>>>>> Hi Sergei, Mike, Ranjan and Jerm, >>>>>> >>>>>> Mike and Ranjan have started the "Plant storyboard 18 month" >>>>>> >>>>>> >>>>>> https://docs.google.com/document/d/1j_FaxkQJO25AeKQmQlfMnasItGWv_mA6gnsWgau… >>>>>> >>>>>> Sergei please add your network material to the doc by 11:00 today. I have asked Jerm to review the material. >>>>>> >>>>>> Jerm will be arrange a time to meet with you today if he has any questions or if you would like to go through your demo with him, please arrange a time. >>>>>> >>>>>> For tomorrow, I suggest that any powerpoints be in a Kbase dropbox this way if they will be using one computer locally it will be available. Jerm will coordinate this with Nomi and send more today. >>>>>> >>>>>> Doreen >>>>> >>>>> >>>>> <2012-08-16PR.pptx> >>>> . >>>> >>> >>> >>> -- >>> Dr. Sergei Maslov, >>> Department of Biology, >>> Brookhaven National Laboratory, >>> Upton, New York, 11973 >>> Tel: (631) 344-3742; >>> FAX: (631) 344-3407 >>> E@mail: maslov(a)bnl.gov >>> WWW: http://www.cmth.bnl.gov/~maslov >>> >>> <Networks_storyboard.pptx> >> > _______________________________________________ > Plants-domain mailing list > Plants-domain(a)lists.kbase.us > https://lists.kbase.us/mailman/listinfo/plants-domain

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Re: [Kbase-MicroComm] metacommunities tomorrow
by Cottingham, Robert W. 17 Aug '12

17 Aug '12

Will anyone call into ReadyTalk for the Microbial Communities storyboard today? I have heard nothing back. -Bob -----Original Message----- From: Cottingham, Robert W. Sent: Thursday, August 16, 2012 5:13 PM To: 'Ware, Doreen'; Nomi Harris Cc: plants-domain(a)lists.kbase.us; DCChivian(a)lbl.gov; Folker Meyer Subject: RE: metacommunities tomorrow Yes, we will do the same ReadyTalk as today. Dylan and Folker, if there are others calling in let them know: www.readytalk.com Conference Phone Number: 866.740.1260 Access Code: 4958182 -----Original Message----- From: Ware, Doreen [mailto:[email protected]] Sent: Thursday, August 16, 2012 3:57 PM To: Cottingham, Robert W.; Nomi Harris Cc: plants-domain(a)lists.kbase.us Subject: metacommunities tomorrow Bob and Nomi, Can you confirm that you will set up ready talk tomorrow for the meta-communities talk? Doreen -----Original Message----- From: Cottingham, Robert W. [mailto:[email protected]] Sent: Thursday, August 16, 2012 12:29 PM To: Ware, Doreen; Nomi Harris; Ranjan, Priya; Jer-Ming Chia; Sergei Maslov; michael.schatz(a)gmail.com; Weston, David; Pasternak, Shiran; shinjae(a)gmail.com; Dantong Yu (dantongyu(a)gmail.com) Gurtowski, James; Thomason, James; Christopher Scott Henry (chenry(a)mcs.anl.gov) samseaver(a)gmail.com; Kumari, Sunita Subject: RE: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) Please email me the slides. Who has them? Is it Mike? Thanks, -Bob -----Original Message----- From: Ware, Doreen [mailto:[email protected]] Sent: Thursday, August 16, 2012 12:14 PM To: Cottingham, Robert W.; Nomi Harris; Ranjan, Priya; Jer-Ming Chia; Sergei Maslov; michael.schatz(a)gmail.com; Weston, David; Pasternak, Shiran; shinjae(a)gmail.com; Dantong Yu (dantongyu(a)gmail.com) Gurtowski, James; Thomason, James; Christopher Scott Henry (chenry(a)mcs.anl.gov) samseaver(a)gmail.com; Kumari, Sunita Subject: RE: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) Thanks Bob. -----Original Message----- From: Cottingham, Robert W. [mailto:[email protected]] Sent: Thursday, August 16, 2012 12:05 PM To: Nomi Harris; Ranjan, Priya; Jer-Ming Chia; Sergei Maslov; michael.schatz(a)gmail.com; Ware, Doreen; Weston, David; Pasternak, Shiran; shinjae(a)gmail.com; Dantong Yu (dantongyu(a)gmail.com) Gurtowski, James; Thomason, James; Christopher Scott Henry (chenry(a)mcs.anl.gov) samseaver(a)gmail.com; Kumari, Sunita Subject: RE: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) We are doing this on ReadyTalk www.readytalk.com Conference Phone Number: 866.740.1260 Access Code: 4958182 I am going to start up shortly. -Bob -----Original Message----- From: Nomi Harris [mailto:[email protected]] Sent: Thursday, August 16, 2012 11:57 AM To: Cottingham, Robert W. Subject: Fwd: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) >>>> From: Michael Schatz [michael.schatz(a)gmail.com] >>>> Sent: Thursday, August 16, 2012 3:08 AM >>>> Subject: Re: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) >>>> >>>> I posted the draft of our storyboard presentation to the dropbox in: >>>> KBaseTeam->Plants->18mthStoryBoards Begin forwarded message: > From: "Ranjan, Priya" <ranjanp(a)ornl.gov> > Subject: RE: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) > Date: August 16, 2012 8:47:41 AM PDT > To: Jer-Ming Chia <chia(a)cshl.edu>, Sergei Maslov <maslov(a)bnl.gov> > Cc: Michael Schatz <michael.schatz(a)gmail.com>, "Ware, Doreen" <ware(a)cshl.edu>, "Weston, David" <westondj(a)ornl.gov>, "Pasternak, Shiran" <pasterna(a)cshl.edu>, Shinjae Yoo <sjyoo(a)bnl.gov>, Dantong Yu <dtyu(a)bnl.gov>, "Gurtowski, James" <gurtowsk(a)cshl.edu>, "Thomason, James" <thomason(a)cshl.edu>, "Christopher ScottHenry (chenry(a)mcs.anl.gov)" <chenry(a)mcs.anl.gov>, Sam Seaver <samseaver(a)gmail.com>, "Kumari, Sunita" <kumari(a)cshl.edu>, Nomi Harris <nlharris(a)lbl.gov> > > Hi Jer-Ming > > I have a modified version. Please merge this as well. > > Thanks > Ranjan > > ________________________________________ > From: Jer-Ming Chia [chia(a)cshl.edu] > Sent: Thursday, August 16, 2012 10:47 AM > To: Sergei Maslov > Cc: Michael Schatz; Ware, Doreen; Weston, David; Pasternak, Shiran; Shinjae Yoo; Dantong Yu; Gurtowski, James; Thomason, James; Christopher ScottHenry (chenry(a)mcs.anl.gov) Sam Seaver; Kumari, Sunita; Ranjan, Priya; Nomi Harris > Subject: Re: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) > > Thanks Sergei. > > I've updated the "PlantsStoryBoard.merged.pptx" file in the dropbox and also placed your file in the folder. > > Best, > Jer-Ming > > On Aug 16, 2012, at 10:40 AM, Sergei Maslov <maslov(a)bnl.gov> > wrote: > >> Hi all, >> >> My slides are attached. >> >> Sergei >> >> On 8/16/2012 9:00 AM, Jer-Ming Chia wrote: >>> Hey Mike, >>> >>> I started a new merged ppt that includes Ranjan's slides in your deck. Nothing clobbered. >>> >>> Looks good, we just need Sergei's slides and we're good. >>> >>> -Jerm >>> >>> >>> >>> On Aug 16, 2012, at 3:40 AM, "Ranjan, Priya" <ranjanp(a)ornl.gov> wrote: >>> >>>> I also made an overview slide of G2P but then I saw Mike also has a similar slide. >>>> Please add if I have missed something. >>>> >>>> My dropbox is full. Somehow I can receive updates but can't add files. So I am sending this as an attachment. >>>> >>>> ________________________________________ >>>> From: Michael Schatz [michael.schatz(a)gmail.com] >>>> Sent: Thursday, August 16, 2012 3:08 AM >>>> To: Jer-Ming Chia >>>> Cc: Ware, Doreen; Sergei Maslov; Ranjan, Priya; Weston, David; Pasternak, Shiran; Shinjae Yoo; Dantong Yu; Gurtowski, James; Thomason, James; Christopher ScottHenry (chenry(a)mcs.anl.gov) Sam Seaver; Kumari, Sunita; Nomi Harris >>>> Subject: Re: PS storyboards for the meeting on Thursday (attn Sergei, Mike, Ranjan and Jerm) >>>> >>>> I posted the draft of our storyboard presentation to the dropbox in: >>>> KBaseTeam->Plants->18mthStoryBoards >>>> >>>> Sergie, Ranjan: please add in your final updates to your sections. >>>> >>>> Doreen, David, et al: What (if anything) do we want to say about the metabolic modeling? Do you have any final comments we want to make, especially for our vision past the 18 month demo? >>>> >>>> To avoid clobbering each other, please copy and rename the slide deck to have just your sections. I'll do the final merge at 9:15a PST (12:15p EST). >>>> >>>> Thanks! >>>> >>>> Mike >>>> >>>> >>>> On Wed, Aug 15, 2012 at 8:44 PM, Michael Schatz <michael.schatz(a)gmail.com<mailto:[email protected]>> wrote: >>>> I'll work on the presentation tonight following Paramvir's example in dropbox as 081511Dehal Microbes Storyborad. Let's plan to sync at 9am PST / noon EST to finalize the slide deck. >>>> >>>> Sergei- I'll include your figures in the talk. Please send me any other figures or notes you want to include. >>>> >>>> Ranjan- can you prepare slides with screen shots of the Manhattan plots and any other visual elements you want to show? >>>> >>>> Thanks! >>>> >>>> Mike >>>> >>>> >>>> On Wed, Aug 15, 2012 at 8:17 AM, Jer-Ming Chia <chia(a)cshl.edu<mailto:[email protected]>> wrote: >>>> Hello, >>>> >>>> Here's a dropbox location that we can use for the materials: >>>> >>>> KBaseTeam->Plants->18mthStoryBoards >>>> >>>> Best, >>>> Jerm >>>> >>>> >>>> On Aug 15, 2012, at 9:05 AM, "Ware, Doreen" <ware(a)cshl.edu<mailto:[email protected]>> wrote: >>>> >>>>> Hi Sergei, Mike, Ranjan and Jerm, >>>>> >>>>> Mike and Ranjan have started the "Plant storyboard 18 month" >>>>> >>>>> >>>>> https://docs.google.com/document/d/1j_FaxkQJO25AeKQmQlfMnasItGWv_mA6gnsWgau… >>>>> >>>>> Sergei please add your network material to the doc by 11:00 today. I have asked Jerm to review the material. >>>>> >>>>> Jerm will be arrange a time to meet with you today if he has any questions or if you would like to go through your demo with him, please arrange a time. >>>>> >>>>> For tomorrow, I suggest that any powerpoints be in a Kbase dropbox this way if they will be using one computer locally it will be available. Jerm will coordinate this with Nomi and send more today. >>>>> >>>>> Doreen >>>> >>>> >>>> <2012-08-16PR.pptx> >>> . >>> >> >> >> -- >> Dr. Sergei Maslov, >> Department of Biology, >> Brookhaven National Laboratory, >> Upton, New York, 11973 >> Tel: (631) 344-3742; >> FAX: (631) 344-3407 >> E@mail: maslov(a)bnl.gov >> WWW: http://www.cmth.bnl.gov/~maslov >> >> <Networks_storyboard.pptx> >

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no call today
by Dylan Chivian 09 Aug '12

09 Aug '12

Hi guys, turns out I have an all day thing I have to attend, so no call today. Thanks, - Dylan

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manifest and punchlist
by Dylan Chivian 06 Aug '12

06 Aug '12

Hi guys, where do things stand on your part of the manifest and punchlist for next week? I'd like to iterate on your foundation. It'd be best, as Andreas and I discussed last Thursday, to 1. identify the collaborations / projects / data, 2. use that to determine whether our prototype / demo plans are consistent or need modification, 3. build user session diagrams that link to services that need building and underlying data support, 4. then build the punchlist of things that need to be accomplished in order by November, and 5. subset the punchlist and use it for the Aug build manifest. Also, can you send me what was implemented and made available up to this point? What KBase Communities services are available using the KBase framework? What services are available now using an alternate protocol (e.g. REST) that will become KBase services with a consistent interface (once someone defines what that is!) Thanks, - Dylan

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