Configuring MPICH version 3.1 with  '--with-device=ch3:nemesis' '--enable-shared' '--enable-fast' '--enable-f77' '--enable-fc' '--with-pm=hydra' '--prefix=/usr/local/mpich' 'CFLAGS=-fPIC' 'F77=gfortran' 'FFLAGS=-fPIC' 'FC=gfortran' 'FCFLAGS='
Running on system: Linux coyote 3.8.11-100.fc17.x86_64 #1 SMP Wed May 1 19:31:26 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
checking for icc... no
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checking for gcc... gcc
checking whether the C compiler works... yes
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checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking how to run the C preprocessor... gcc -E
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking whether make supports nested variables... yes
checking dependency style of gcc... gcc3
checking whether to enable maintainer-specific portions of Makefiles... yes
checking for ar... ar
checking the archiver (ar) interface... ar
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
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checking whether we are using the GNU C++ compiler... yes
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checking how to run the C++ preprocessor... g++ -E
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checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
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checking whether gfortran accepts -g... yes
checking if libtool supports shared libraries... yes
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checking how to hardcode library paths into programs... immediate
configure: RUNNING PREREQ FOR ch3:nemesis
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configure: ===== configuring src/mpl =====
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local/mpich'  '--with-device=ch3:nemesis' '--enable-shared' '--enable-fast' '--enable-f77' '--enable-fc' '--with-pm=hydra' 'CFLAGS=-fPIC   -DNDEBUG -DNVALGRIND' 'F77=gfortran' 'FFLAGS=-fPIC ' 'FC=gfortran' 'FCFLAGS= ' --cache-file=/dev/null --srcdir=.
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for style of include used by make... GNU
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking the archiver (ar) interface... ar
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
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checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
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checking whether ln -s works... yes
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checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
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checking command to parse /usr/bin/nm -B output from gcc object... ok
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checking how to run the C preprocessor... gcc -E
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checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
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checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
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checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
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checking whether to build shared libraries... yes
checking whether to build static libraries... yes
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configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating include/config.h
config.status: include/config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing include/mplconfig.h commands
config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines
config.status: include/mplconfig.h is unchanged
configure: ===== done with src/mpl configure =====
configure: sourcing src/mpl/localdefs
configure: ===== configuring src/openpa =====
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local/mpich' --with-atomic-primitives=auto_allow_emulation '--with-device=ch3:nemesis' '--enable-shared' '--enable-fast' '--enable-f77' '--enable-fc' '--with-pm=hydra' 'CFLAGS=-fPIC   -DNDEBUG -DNVALGRIND' 'F77=gfortran' 'FFLAGS=-fPIC ' 'FC=gfortran' 'FCFLAGS= ' --cache-file=/dev/null --srcdir=.
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking the archiver (ar) interface... ar
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
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checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
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checking for memory.h... yes
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checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether make supports nested variables... (cached) yes
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
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checking whether gcc understands -c and -o together... (cached) yes
checking dependency style of gcc... (cached) gcc3
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checking for inline... inline
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checking if 100 threads can be run at once... yes
checking size of void *... 8
checking size of int... 4
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checking whether to enable strict fairness checks... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating openpa.pc
config.status: creating src/config.h
config.status: src/config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing src/opa_config.h commands
config.status: creating src/opa_config.h - prefix OPA for src/config.h defines
config.status: src/opa_config.h is unchanged
configure: ===== done with src/openpa configure =====
sourcing /usr/local/paquetes/mpich-install/3.1/fabrica/src/pm/hydra/mpichprereq
checking whether the compiler defines __func__... yes
checking whether the compiler defines __FUNC__... no
checking whether the compiler sets __FUNCTION__... yes
checking whether C compiler accepts option -O2... yes
checking whether C compiler option -O2 works with an invalid prototype program... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking for type of weak symbol alias support... pragma weak
checking whether __attribute__ ((weak)) allowed... yes
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checking whether __attribute__((weak,alias(...))) allowed... no
checking for multiple weak symbol support... yes
checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf)
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checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran...  -L/usr/lib/gcc/x86_64-redhat-linux/4.7.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.7.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.7.2/../../.. -lgfortran -lm -lquadmath
checking whether gfortran accepts the FLIBS found by autoconf... yes
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checking for linker for Fortran main program... Use Fortran to link programs
checking for Fortran 77 name mangling... lower uscore
checking for libraries to link Fortran main with C stdio routines... none
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checking whether the Fortran 90 compiler (gfortran    ) works... yes
checking whether the Fortran 90 compiler (gfortran    ) is a cross-compiler... no
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checking for shared library (esp. rpath) characteristics of F77... done (results in src/env/f77_shlib.conf)
checking whether Fortran 77 accepts ! for comments... yes
checking for include directory flag for Fortran... -I
checking for Fortran 77 flag for library directories... -L
checking whether Fortran 77 compiler processes .F files with C preprocessor... yes
checking whether gfortran allows mismatched arguments... yes
checking for shared library (esp. rpath) characteristics of FC... done (results in src/env/fc_shlib.conf)
checking whether the Fortran 90 compiler (gfortran    ) works... yes
checking whether the Fortran 90 compiler (gfortran    ) is a cross-compiler... no
checking for Fortran 90 module extension... mod
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checking whether Fortran 90 compiler processes .F90 files with C preprocessor... yes
checking what libraries are needed to link Fortran90 programs with C routines that use stdio... none
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checking whether C++ compiler works with string... yes
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checking whether the compiler recognizes bool as a built-in type... yes
checking whether the compiler implements namespaces... yes
checking whether <iostream> available... yes
checking whether the compiler implements the namespace std... yes
checking whether <math> available... no
checking for GNU g++ version... 4 . 7
checking for shared library (esp. rpath) characteristics of CXX... done (results in src/env/cxx_shlib.conf)
checking for perl... /usr/bin/perl
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checking whether install works... yes
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checking whether clock skew breaks make... no
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checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for bash... /usr/bin/bash
checking whether /usr/bin/bash supports arrays... yes
checking for doctext... false
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checking for working volatile... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking whether __attribute__ allowed... yes
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checking if C compiler supports __builtin_expect... yes
checking whether byte ordering is bigendian... no
checking whether C compiler allows unaligned doubles... yes
checking whether gcc supports __func__... yes
checking whether long double is supported... yes
checking whether long long is supported... yes
checking for max C struct integer alignment... eight
checking for max C struct floating point alignment... sixteen
checking for max C struct alignment of structs with doubles... eight
checking for max C struct floating point alignment with long doubles... sixteen
configure: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs.  MPICH does not handle this case automatically and you should avoid assumed extents for structures containing float types.
checking if alignment of structs with doubles is based on position... no
checking if alignment of structs with long long ints is based on position... no
checking if double alignment breaks rules, find actual alignment... no
checking for alignment restrictions on pointers... int or better
checking size of char... 1
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checking size of int... 4
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checking size of unsigned long... 8
checking size of long long... 8
checking size of unsigned long long... 8
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checking size of long double... 16
checking size of void *... 8
checking for ANSI C header files... (cached) yes
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checking size of wchar_t... 4
checking size of float_int... 8
checking size of double_int... 16
checking size of long_int... 16
checking size of short_int... 8
checking size of two_int... 8
checking size of long_double_int... 32
checking sys/bitypes.h usability... yes
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checking complex.h usability... yes
checking complex.h presence... yes
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checking size of _Bool... 1
checking size of float _Complex... 8
checking size of double _Complex... 16
checking size of long double _Complex... 32
checking for _Bool... yes
checking for float _Complex... yes
checking for double _Complex... yes
checking for long double _Complex... yes
checking for size of Fortran type integer... 4
checking for size of Fortran type real... 4
checking for size of Fortran type double precision... 8
checking whether integer*1 is supported... yes
checking whether integer*2 is supported... yes
checking whether integer*4 is supported... yes
checking whether integer*8 is supported... yes
checking whether integer*16 is supported... yes
checking whether real*4 is supported... yes
checking whether real*8 is supported... yes
checking whether real*16 is supported... yes
checking for C type matching Fortran real... float
checking for C type matching Fortran double... double
checking for C type matching Fortran integer... int
checking for values of Fortran logicals... True is 1 and False is 0
checking for Fortran 90 integer kind for 8-byte integers... 8
checking for Fortran 90 integer kind for 4-byte integers... 4
checking if real*8 is supported in Fortran 90... yes
checking size of bool... 1
checking complex usability... yes
checking complex presence... yes
checking for complex... yes
checking size of Complex... 8
checking size of DoubleComplex... 16
checking size of LongDoubleComplex... 32
checking for alignment restrictions on int64_t... no
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checking for gcc __asm__ and pentium cmpxchgl instruction... no
checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... yes
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checking size of MPIR_Bsend_data_t... 96
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checking whether the CPU_SET and CPU_ZERO macros are defined... no
configure: RUNNING CONFIGURE FOR F90 CODE
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checking for the precision and range of reals...  6 , 37
checking for the precision and range of double precision...  15 , 307
checking for the range of integer...  9
checking for available integer kinds...  2 , 1, 4 , 2, 9 , 4, 18 , 8,
checking for available integer ranges...  {  2 , 1 , 1 }, {  4 , 2 , 2 }, {  9 , 4 , 4 }, {  18 , 8 , 8 },
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checking for library containing socket... none required
checking for library containing gethostbyname... none required
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checking whether struct hostent contains h_addr_list... yes
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configure: RUNNING CONFIGURE FOR CH3 DEVICE
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configure: RUNNING CONFIGURE FOR ch3:nemesis
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configure: Using a memory-mapped file for shared memory
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checking whether we can use struct ifreq... yes
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configure: ===== configuring src/mpi/romio =====
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local/mpich'  '--with-device=ch3:nemesis' '--enable-shared' '--enable-fast' '--enable-f77' '--enable-fc' '--with-pm=hydra' 'CFLAGS=-fPIC   -DNDEBUG -DNVALGRIND -O2' 'F77=gfortran' 'FFLAGS=-fPIC  -O2' 'FC=gfortran' 'FCFLAGS= ' --cache-file=/dev/null --srcdir=.
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... yes
checking for style of include used by make... GNU
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking the archiver (ar) interface... ar
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
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checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
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checking for sys/stat.h... yes
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checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether make supports nested variables... (cached) yes
Configuring with args dummy mt
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for architecture... LINUX
ROMIO home directory is /usr/local/paquetes/mpich-install/3.1/fabrica/src/mpi/romio
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
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checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
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checking whether gfortran accepts -g... yes
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checking whether to build shared libraries... yes
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checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
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checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for long long... yes
checking size of long long... 8
checking for memalign... yes
checking Fortran external names
Fortran externals have a trailing underscore and are lowercase
checking for inline... inline
checking for size_t... yes
checking for ssize_t... yes
checking for off_t... yes
checking how to run the C preprocessor... gcc -E
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checking size of int... 4
checking size of void *... 8
checking for int large enough for pointers... no
checking size of long long... (cached) 8
checking for extension for Fortran 90 programs... f90
checking for Fortran 90 KIND parameter for 8-byte integers...            8
checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT... yes
Overriding Array test for MPICH
checking for type of weak symbol alias support... pragma weak
checking whether __attribute__ ((weak)) allowed... yes
checking whether __attribute__ ((weak_import)) allowed... yes
checking whether __attribute__((weak,alias(...))) allowed... no
checking for multiple weak symbol support... yes
checking whether struct flock compatible with MPI_Offset... yes
checking for pvfs2-config... notfound
checking configured file systems... testfs ufs nfs
configure: WARNING: File locks may not work with NFS.  See the Installation and
users manual for instructions on testing and if necessary fixing this
checking for library containing aio_write... -lrt
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checking for f_fstypename member of statfs structure... no
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checking for st_fstype member of stat structure... no
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checking for f_basetype member of statvfs structure... no
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checking whether off64_t is an scalar type... yes
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checking for doctext... false
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checking whether strdup needs a declaration... no
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checking whether fsync needs a declaration... no
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checking whether ftruncate needs a declaration... no
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checking whether lseek64 needs a declaration... no
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checking for large file defines... yes
setting SYSDEP_INC to 
checking for C/C++ restrict keyword... __restrict
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking for gcov... gcov
setting CC to gcc
setting F77 to gfortran
setting TEST_CC to $(bindir)/mpicc
setting TEST_F77 to $(bindir)/mpif77
setting CFLAGS to -fPIC   -DNDEBUG -DNVALGRIND -O2  -DFORTRANUNDERSCORE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64
setting USER_CFLAGS to 
setting USER_FFLAGS to 
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating mpi2-other/info/Makefile
config.status: creating mpi2-other/array/Makefile
config.status: creating test/Makefile
config.status: creating test/misc.c
config.status: creating test/large_file.c
config.status: creating test/runtests
config.status: creating test-internal/Makefile
config.status: creating util/romioinstall
config.status: creating include/mpio.h
config.status: creating include/mpiof.h
config.status: creating mpi2-other/info/fortran/Makefile
config.status: creating mpi2-other/array/fortran/Makefile
config.status: creating test/fmisc.f
config.status: creating test/fcoll_test.f
config.status: creating test/pfcoll_test.f
config.status: creating test/fperf.f
config.status: creating adio/include/romioconf.h
config.status: adio/include/romioconf.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing default-1 commands
configure: ===== done with src/mpi/romio configure =====
configure: sourcing src/mpi/romio/localdefs
configure: ===== configuring src/pm/hydra =====
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local/mpich'  '--with-device=ch3:nemesis' '--enable-shared' '--enable-fast' '--enable-f77' '--enable-fc' '--with-pm=hydra' 'CFLAGS=-fPIC   -DNDEBUG -DNVALGRIND -O2' 'F77=gfortran' 'FFLAGS=-fPIC  -O2' 'FC=gfortran' 'FCFLAGS= ' --cache-file=/dev/null --srcdir=.
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
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checking whether it is safe to define __EXTENSIONS__... yes
checking for fgrep... /usr/bin/grep -F
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking whether make supports nested variables... yes
checking dependency style of gcc... gcc3
checking the archiver (ar) interface... ar
checking whether make supports nested variables... (cached) yes
checking for doctext... false
checking for an ANSI C-conforming const... yes
checking for working volatile... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking size of unsigned long... 8
checking for size_t... yes
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for ld used by gcc... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
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checking if : is a manifest tool... no
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checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for variable argument list macro functionality... yes
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking whether the compiler defines __func__... yes
checking whether the compiler defines __FUNC__... no
checking whether the compiler sets __FUNCTION__... yes
checking for doxygen... /usr/bin/doxygen
checking for gcov... gcov
checking for ANSI C header files... (cached) yes
checking for unistd.h... (cached) yes
checking for strings.h... (cached) yes
checking for sys/types.h... (cached) yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
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checking sched.h presence... yes
checking for sched.h... yes
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checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking netinet/tcp.h usability... yes
checking netinet/tcp.h presence... yes
checking for netinet/tcp.h... yes
checking sys/un.h usability... yes
checking sys/un.h presence... yes
checking for sys/un.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking ifaddrs.h usability... yes
checking ifaddrs.h presence... yes
checking for ifaddrs.h... yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
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checking poll.h usability... yes
checking poll.h presence... yes
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checking fcntl.h presence... yes
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checking for time... yes
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checking for signal... yes
checking for usleep... yes
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checking for stat... yes
checking for fcntl... yes
checking for alarm... yes
checking for isatty... yes
checking for inet_ntop... yes
checking for getpgid... yes
checking for setsid... yes
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checking whether gettimeofday needs a declaration... no
checking whether getpgid needs a declaration... no
checking whether killpg needs a declaration... no
checking for environ in unistd.h... yes
checking bootstrap server... user,ssh,rsh,fork,slurm,ll,lsf,sge,pbs,cobalt,manual,persist
checking tm.h usability... yes
checking tm.h presence... yes
checking for tm.h... yes
checking for tm_init in -ltorque... yes
checking process manager... pmiserv
checking user interface... mpich
checking desired processor topology libraries... hwloc
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for X... libraries , headers 

###
### Configuring hwloc core
###
checking hwloc building mode... embedded
configure: hwloc builddir: /usr/local/paquetes/mpich-install/3.1/fabrica/src/pm/hydra/tools/topo/hwloc/hwloc
configure: hwloc srcdir: /usr/local/paquetes/mpich-install/3.1/fabrica/src/pm/hydra/tools/topo/hwloc/hwloc
checking if want hwloc maintainer support... disabled (embedded mode)
checking for hwloc directory prefix... tools/topo/hwloc/hwloc/
checking for hwloc symbol prefix... hwloc_
checking size of void *... 8
checking which OS support to include... Linux
checking which CPU support to include... x86_64
checking size of unsigned long... (cached) 8
checking size of unsigned int... 4
checking for the C compiler vendor... gnu
checking for __attribute__... yes
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checking for __attribute__(weak_alias)... yes
checking if gcc supports -fvisibility=hidden... yes
checking whether to enable symbol visibility... yes (via -fvisibility=hidden)
configure: WARNING: "-fvisibility=hidden" has been added to the hwloc CFLAGS
checking whether the C compiler rejects function calls with too many arguments... yes
checking whether the C compiler rejects function calls with too few arguments... yes
checking for unistd.h... (cached) yes
checking dirent.h usability... yes
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checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no
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checking for main in -lgdi32... no
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checking whether fabsf is declared... yes
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checking picl.h usability... no
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checking whether _SC_NPROCESSORS_ONLN is declared... yes
checking whether _SC_NPROCESSORS_CONF is declared... yes
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checking for bash... /bin/sh
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checking for gethostbyname... yes
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checking X11/keysym.h usability... yes
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checking for LIBXML2... yes
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checking components to build statically...  noos xml synthetic custom xml_nolibxml linux linuxpci xml_libxml x86
checking components to build as plugins... 
checking available processor topology libraries... hwloc
checking pthread.h usability... yes
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checking checkpointing library... blcr
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checking for poll... yes
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checking for signal... (cached) yes
checking for sigset... yes
checking for struct sigaction and sa_handler... yes
checking for gethostname... yes
checking whether gethostname needs a declaration... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating tools/topo/hwloc/hwloc/Makefile
config.status: creating tools/topo/hwloc/hwloc/include/Makefile
config.status: creating tools/topo/hwloc/hwloc/src/Makefile
config.status: creating Makefile
config.status: creating tools/bootstrap/src/bsci_init.c
config.status: creating hydra-doxygen.cfg
config.status: creating include/hydra_config.h
config.status: creating tools/topo/hwloc/hwloc/include/private/autogen/config.h
config.status: creating tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h
config.status: tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
configure: ===== done with src/pm/hydra configure =====
checking size of OPA_ptr_t... 8
checking the sizeof MPI_Offset... 8
checking whether the Fortran Offset type works with Fortran 77... yes
checking whether the Fortran Offset type works with Fortran 90... yes
checking for size of MPI_Status... 20
checking for BSD/POSIX style global symbol lister... BSD style,/usr/bin/nm -g -B
checking stdio.h usability... yes
checking stdio.h presence... yes
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checking for multiple __attribute__((alias)) support... yes
checking the minimum alignment of Fortran common block of 1 integers... 16
checking the minimum alignment of Fortran common block of 5 integers... 16, too small! reset to 32
configure: WARNING: The ch3:nemesis device did not set the maximum size of an error string, 512 being used.
configure: creating ./config.lt
config.lt: creating libtool
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating src/binding/f90/mpif90model.h
config.status: creating src/mpid/ch3/channels/nemesis/include/mpid_nem_net_module_defs.h
config.status: creating src/mpid/ch3/channels/nemesis/src/mpid_nem_net_array.c
config.status: creating Makefile
config.status: creating examples/Makefile
config.status: creating test/Makefile
config.status: creating test/commands/Makefile
config.status: creating src/include/mpichinfo.h
config.status: creating mpich-doxygen
config.status: creating src/include/glue_romio.h
config.status: creating src/include/mpichtimer.h
config.status: creating src/binding/cxx/mpicxx.h
config.status: creating src/binding/f77/mpif.h
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config.status: creating src/binding/f90/mpi_sizeofs.f90
config.status: creating src/binding/f90/mpi_base.f90
config.status: creating src/binding/f90/mpi_constants.f90
config.status: creating src/packaging/pkgconfig/mpich.pc
config.status: creating src/packaging/envmods/mpich.module
config.status: WARNING:  'src/packaging/envmods/mpich.module.in' seems to ignore the --datarootdir setting
config.status: creating src/env/mpixxx_opts.conf
config.status: creating src/env/mpicc.sh
config.status: creating src/env/mpicc.bash
config.status: creating src/env/mpicxx.sh
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config.status: creating src/env/mpif77.sh
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config.status: creating src/env/mpif90.sh
config.status: creating src/env/mpif90.bash
config.status: creating src/env/parkill
config.status: creating src/util/dbg/getfuncstack
config.status: creating src/include/mpi.h
config.status: creating doc/design/Makefile
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config.status: creating doc/refman/Makefile
config.status: creating doc/userguide/Makefile
config.status: creating test/commands/cmdtests
config.status: creating src/include/mpichconf.h
config.status: src/include/mpichconf.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing default-1 commands
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config.status: executing default-3 commands
config.status: executing default-4 commands
config.status: executing default-5 commands
=== configuring in test/mpi (/usr/local/paquetes/mpich-install/3.1/fabrica/test/mpi)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local/mpich'  '--with-device=ch3:nemesis' '--enable-shared' '--enable-fast' '--enable-f77' '--enable-fc' '--with-pm=hydra' 'CFLAGS=-fPIC' 'F77=gfortran' 'FFLAGS=-fPIC' 'FC=gfortran' 'FCFLAGS=' --cache-file=/dev/null --srcdir=.
RUNNING CONFIGURE FOR MPI TESTS
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... yes
checking whether make supports nested variables... (cached) yes
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for style of include used by make... GNU
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
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checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking whether long double is supported... yes
checking whether long long is supported... yes
checking for an ANSI C-conforming const... yes
checking for C/C++ restrict keyword... __restrict
checking for ranlib... ranlib
checking the archiver (ar) interface... ar
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checking how to run the C preprocessor... gcc -E
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checking size of void *... 8
checking pthread.h usability... yes
checking pthread.h presence... yes
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checking for library containing pthread_create... -lpthread
checking for library containing pthread_barrier_init... none required
checking for pthread_create... yes
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checking for pthread_barrier_wait... yes
checking whether struct hostent contains h_addr_list... yes
checking for getrusage... yes
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking whether integer*4 is supported... yes
checking whether integer*8 is supported... yes
checking whether integer*16 is supported... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran...  -L/usr/lib/gcc/x86_64-redhat-linux/4.7.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.7.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.7.2/../../.. -lpthread -lgfortran -lm -lquadmath
checking for Fortran 77 name mangling... lower uscore
checking whether gfortran allows mismatched arguments... yes
checking for Fortran libraries needed for getarg... none needed
checking whether Fortran 77 supports Cray-style pointer... yes
checking for Fortran 77 compiler flag for Cray-style pointer... -fcray-pointer
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking for extension for Fortran 90 programs... f90
checking whether the Fortran 90 compiler (gfortran     ) works... yes
checking whether the Fortran 90 compiler (gfortran     ) is a cross-compiler... no
checking for Fortran flag needed to accept free-form source... none
checking whether Fortran 90 supports Cray-style pointer... yes
checking for Fortran 90 compiler flag for Cray-style pointer... -fcray-pointer
checking whether gfortran supports the Fortran 2003 routines to access the commandline... yes
checking for Fortran 90 module extension... mod
checking for Fortran 90 module include flag... -I
checking for Fortran 90 module output directory flag... -J
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking whether <iostream> available... yes
checking whether the compiler implements namespaces... yes
checking whether the compiler implements the namespace std... yes
checking whether MPI_2DOUBLE_COMPLEX is available... no
checking whether MPI_2COMPLEX is available... no
checking size of void *... (cached) 8
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of short... 2
checking for C integer type of address size... long
checking for perl... /usr/bin/perl
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating maint/testmerge
config.status: creating runtests
config.status: creating checktests
config.status: creating Makefile
config.status: creating basic/Makefile
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config.status: creating rma/testlist
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config.status: creating topo/Makefile
config.status: creating io/Makefile
config.status: creating f77/Makefile
config.status: creating f77/attr/Makefile
config.status: creating f77/attr/attraints.h
config.status: creating f77/pt2pt/attr1aints.h
config.status: creating f77/ext/add1size.h
config.status: creating f77/datatype/Makefile
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config.status: creating f77/util/Makefile
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config.status: creating f77/topo/Makefile
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config.status: creating f77/rma/addsize.h
config.status: creating f77/pt2pt/Makefile
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config.status: creating f77/spawn/testlist
config.status: creating f77/spawn/type1aint.h
config.status: creating f77/rma/Makefile
config.status: creating f77/ext/Makefile
config.status: creating f77/ext/testlist
config.status: creating f77/io/Makefile
config.status: creating f77/io/iooffset.h
config.status: creating f77/io/iodisp.h
config.status: creating f77/io/ioaint.h
config.status: creating f77/profile/Makefile
config.status: creating f90/Makefile
config.status: creating f90/attr/Makefile
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config.status: creating f90/spawn/testlist
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config.status: creating f90/io/Makefile
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config.status: creating cxx/Makefile
config.status: creating cxx/util/Makefile
config.status: creating cxx/attr/Makefile
config.status: creating cxx/pt2pt/Makefile
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config.status: creating cxx/io/Makefile
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config.status: creating cxx/topo/Makefile
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config.status: creating threads/pt2pt/Makefile
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config.status: creating threads/mpi_t/Makefile
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config.status: creating errors/pt2pt/Makefile
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config.status: creating errors/f77/Makefile
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config.status: creating errors/f77/io/addsize.h
config.status: creating errors/f77/io/iooffset.h
config.status: creating errors/f90/Makefile
config.status: creating errors/f90/io/Makefile
config.status: creating ckpoint/Makefile
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config.status: creating manual/Makefile
config.status: creating manual/manyconnect
config.status: creating manual/mpi_t/Makefile
config.status: creating perf/Makefile
config.status: creating testlist
config.status: creating cxx/testlist
config.status: creating cxx/topo/testlist
config.status: creating f77/testlist
config.status: creating f90/testlist
config.status: creating threads/testlist
config.status: creating errors/testlist
config.status: creating errors/cxx/testlist
config.status: creating errors/f77/testlist
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config.status: creating impls/testlist
config.status: creating impls/Makefile
config.status: creating impls/hydra/Makefile
config.status: creating impls/hydra/proc_binding.sh
config.status: creating impls/mpich/Makefile
config.status: creating impls/mpich/testlist
config.status: creating impls/mpich/mpi_t/Makefile
config.status: creating include/mpitestconf.h
config.status: include/mpitestconf.h is unchanged
config.status: executing depfiles commands
config.status: executing default-1 commands
config.status: executing default-2 commands
config.status: executing default-3 commands
config.status: executing default-4 commands
Configuration completed.
