- Dionlab - mailman3.cels.anl.gov

Re: [dionlab] Mixed models in analyzing/ interpreting abundance count data
by Kevin Keegan 17 Apr '14

17 Apr '14

Sure thing, Anyone with the link <https://docs.google.com/spreadsheet/ccc?key=0AhAGeQplFvTidE90T3pFdUN5X29zNT…>should be able to view it now. Should be able to view the list. If you can't edit it - just send me your gmail address so I can add you to the list Cheers Kevin On Thu, Apr 17, 2014 at 1:44 PM, Sarah L. O'Brien <slobrien1(a)gmail.com>wrote: > Can you please give us permission to see the doc? I don’t know what you > mean by mixed models, but I assume the lit list you’ve assembled will help. > > Thanks, > Sv1 > __________________ > Sarah L. O'Brien, Ph.D. > > Assistant Environmental Microbiologist > Institute for Genomics & Systems Biology > Argonne National Laboratory > Building 202 A-329 > 9700 S. Cass Ave. > Argonne, IL 60439 > 630.252.7854 > sobrien(a)anl.gov > > On Apr 17, 2014, at 12:45 PM, Kevin Keegan <kevin.p.keegan(a)gmail.com> > wrote: > > Hi All, > > Folker asked Will and I to lead a discussion about recent literature on > mixed models; there's been a lot of buz about it recently, and we want to > get on top of it. > > We have a list of paper we've been looking at here<https://docs.google.com/spreadsheet/ccc?key=0AhAGeQplFvTidE90T3pFdUN5X29zNT…>; > feel free to take a look and add to it -- let me know if you have any > trouble accessing it. > > We're planning to meet next Wednesday or Thursday > Let me know if you have a preferred day time. > Right now, we're planning to use our research club slot, Thursday 9:30 > -10:30, > bld 240 rm 4313 > > Cheers > Kevin > > PS > > -- > Kevin > > > __________________________________ > Kevin P. Keegan, PhD > > Argonne National Laboratory (work) > 9700 South Cass Avenue > Bldg. 240, Rm. 4.G.14 > Argonne, IL 60439 > (630)252-3703 > kkeegan(a)anl.gov > > kevin.p.keegan(a)gmail.com (home) > (847)733-1079 > > > > -- Kevin __________________________________ Kevin P. Keegan, PhD Argonne National Laboratory (work) 9700 South Cass Avenue Bldg. 240, Rm. 4.G.14 Argonne, IL 60439 (630)252-3703 kkeegan(a)anl.gov kevin.p.keegan(a)gmail.com (home) (847)733-1079

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Re: [dionlab] Mixed models in analyzing/ interpreting abundance count data
by Sarah L. O'Brien 17 Apr '14

17 Apr '14

Can you please give us permission to see the doc? I don’t know what you mean by mixed models, but I assume the lit list you’ve assembled will help. Thanks, Sv1 __________________ Sarah L. O'Brien, Ph.D. Assistant Environmental Microbiologist Institute for Genomics & Systems Biology Argonne National Laboratory Building 202 A-329 9700 S. Cass Ave. Argonne, IL 60439 630.252.7854 sobrien(a)anl.gov On Apr 17, 2014, at 12:45 PM, Kevin Keegan <kevin.p.keegan(a)gmail.com> wrote: > Hi All, > > Folker asked Will and I to lead a discussion about recent literature on mixed models; there's been a lot of buz about it recently, and we want to get on top of it. > > We have a list of paper we've been looking at here; feel free to take a look and add to it -- let me know if you have any trouble accessing it. > > We're planning to meet next Wednesday or Thursday > Let me know if you have a preferred day time. > Right now, we're planning to use our research club slot, Thursday 9:30 -10:30, > bld 240 rm 4313 > > Cheers > Kevin > > PS > > -- > Kevin > > > __________________________________ > Kevin P. Keegan, PhD > > Argonne National Laboratory (work) > 9700 South Cass Avenue > Bldg. 240, Rm. 4.G.14 > Argonne, IL 60439 > (630)252-3703 > kkeegan(a)anl.gov > > kevin.p.keegan(a)gmail.com (home) > (847)733-1079 > >

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Re: [dionlab] Mixed models in analyzing/ interpreting abundance count data
by Kevin Keegan 17 Apr '14

17 Apr '14

Correction - We're planning on next Friday 9:30 - 10:30 Use this doodle <http://doodle.com/v828wqahabg8i9ug> to indicate another day/time if that doesn't work. Cheers On Thu, Apr 17, 2014 at 12:45 PM, Kevin Keegan <kevin.p.keegan(a)gmail.com>wrote: > Hi All, > > Folker asked Will and I to lead a discussion about recent literature on > mixed models; there's been a lot of buz about it recently, and we want to > get on top of it. > > We have a list of paper we've been looking at here<https://docs.google.com/spreadsheet/ccc?key=0AhAGeQplFvTidE90T3pFdUN5X29zNT…>; > feel free to take a look and add to it -- let me know if you have any > trouble accessing it. > > We're planning to meet next Wednesday or Thursday > Let me know if you have a preferred day time. > Right now, we're planning to use our research club slot, Thursday 9:30 > -10:30, > bld 240 rm 4313 > > Cheers > Kevin > > PS > > -- > Kevin > > > __________________________________ > Kevin P. Keegan, PhD > > Argonne National Laboratory (work) > 9700 South Cass Avenue > Bldg. 240, Rm. 4.G.14 > Argonne, IL 60439 > (630)252-3703 > kkeegan(a)anl.gov > > kevin.p.keegan(a)gmail.com (home) > (847)733-1079 > > > -- Kevin __________________________________ Kevin P. Keegan, PhD Argonne National Laboratory (work) 9700 South Cass Avenue Bldg. 240, Rm. 4.G.14 Argonne, IL 60439 (630)252-3703 kkeegan(a)anl.gov kevin.p.keegan(a)gmail.com (home) (847)733-1079

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Mixed models in analyzing/ interpreting abundance count data
by Kevin Keegan 17 Apr '14

17 Apr '14

Hi All, Folker asked Will and I to lead a discussion about recent literature on mixed models; there's been a lot of buz about it recently, and we want to get on top of it. We have a list of paper we've been looking at here<https://docs.google.com/spreadsheet/ccc?key=0AhAGeQplFvTidE90T3pFdUN5X29zNT…>; feel free to take a look and add to it -- let me know if you have any trouble accessing it. We're planning to meet next Wednesday or Thursday Let me know if you have a preferred day time. Right now, we're planning to use our research club slot, Thursday 9:30 -10:30, bld 240 rm 4313 Cheers Kevin PS -- Kevin __________________________________ Kevin P. Keegan, PhD Argonne National Laboratory (work) 9700 South Cass Avenue Bldg. 240, Rm. 4.G.14 Argonne, IL 60439 (630)252-3703 kkeegan(a)anl.gov kevin.p.keegan(a)gmail.com (home) (847)733-1079

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Re: [dionlab] next seminar
by Kevin Keegan 12 Nov '13

12 Nov '13

For anyone interested, The next computational biology seminar will be Monday Nov 18, 3:00pm, 240 Rm 4313 Adina Chuang Howe will talk about diet effects on population shifts and recovery in the mouse gut. Cheers Kevin On Tue, Nov 12, 2013 at 10:30 AM, Kemner, Kenneth M. <Kemner(a)anl.gov> wrote: > Everyone, > As I mentioned during out last seminar, we will have an out of town guest > giving a seminar on November 25th at 11am in E142. > Hope to see all of you there. > See below for title, etc. > Best, > Ken > > > > "Iron -- Cold Iron -- is Master of them All !" -- Anaerobic processes > in Arctic Tundra > > Ted K. Raab > Carnegie Institution for Washington, Stanford CA > > > ------------------------------------------ > Ken Kemner, Ph.D. > Building 203, Room E109 > Argonne National Laboratory > Argonne, Illinois 60439 > phone: (630) 252-1163 > FAX: (630) 252-9793 > ----------------------------------------- > > -- Kevin __________________________________ Kevin P. Keegan, PhD Argonne National Laboratory (work) 9700 South Cass Avenue Bldg. 240, Rm. 4.G.14 Argonne, IL 60439 (630)252-3703 kkeegan(a)anl.gov kevin.p.keegan(a)gmail.com (home) (847)733-1079

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Computational Biology Research Meeting
by Kevin Keegan 06 Nov '13

06 Nov '13

Hello all, Our next research meeting will be: Monday Nov 18 at 3:00pm, Building 240 Room 4313 (it's our usual room, but different day and time) Adina will be presenting he work. Hope to see you Please let me know if anyone receives this email more than once, or if anyone in your respective groups did not receive it Cheers Kevin -- Kevin __________________________________ Kevin P. Keegan, PhD Argonne National Laboratory (work) 9700 South Cass Avenue Bldg. 240, Rm. 4.G.14 Argonne, IL 60439 (630)252-3703 kkeegan(a)anl.gov kevin.p.keegan(a)gmail.com (home) (847)733-1079

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Re: [dionlab] research club
by Kevin Keegan 31 Oct '13

31 Oct '13

Thanks Jack, For now I will include them on the emails - and can chat with Hunter to see what's up with the mailing list. Cheers Kevin On Thu, Oct 31, 2013 at 10:29 AM, Jack Gilbert <gilbertjack(a)anl.gov> wrote: > Hi Kevin, > > Thats weird I didn't get an email asking for approval. > > I have added, Nicole, Kim, Chris, Iratxe, Sean, Jarrad, and Simon to this > email. > > Jack > > > On Thu, Oct 31, 2013 at 10:21 AM, Kevin Keegan <kevin.p.keegan(a)gmail.com>wrote: > >> Hey Jack, >> >> What's the best way to contact your group members? I tried the >> jacklab(a)igsb.anl.gov email list that Hunter set up - I think you have to >> approve me to send messages to it (the message was bounced back to me with >> the note pasted below). If you don't use this list, just let me know who >> should received the emails. >> >> Your mail to 'jacklab' with the subject >> >> research club >> >> Is being held until the list moderator can review it for approval. >> >> The reason it is being held: >> >> Post by non-member to a members-only list >> >> Either the message will get posted to the list, or you will receive >> notification of the moderator's decision. If you would like to cancel >> this posting, please visit the following URL: >> >> Thanks >> Kevin >> >> >> On Tue, Oct 29, 2013 at 12:44 PM, Jack Gilbert <gilbertjack(a)anl.gov>wrote: >> >>> Hi Kevin, >>> >>> Sounds good, we already do one of these with Ken's group as well. So I >>> cannot promise people have the time to turn up to both each time. But agree >>> that folks should interact more. >>> >>> Jack >>> >>> >>> On Tue, Oct 29, 2013 at 12:42 PM, Kevin Keegan <kevin.p.keegan(a)gmail.com >>> > wrote: >>> >>>> Hey Jack, >>>> >>>> We've started up our research club again. >>>> >>>> We meet ~every other Thursday, 9:30 - 10:30 - 240, 4313. >>>> Schedule<https://docs.google.com/document/d/1UKEmqXLkSs-eC9xks5DmIwUdSvIPObkynbfYDAX…> >>>> >>>> It would be great if anyone in your group wanted to participate. >>>> >>>> This Thursday (31rst), Andreas will be presenting. >>>> >>>> Thanks >>>> Kevin >>>> >>>> >>>> >>>> >>>> -- >>>> Kevin >>>> >>>> >>>> __________________________________ >>>> Kevin P. Keegan, PhD >>>> >>>> Argonne National Laboratory (work) >>>> 9700 South Cass Avenue >>>> Bldg. 240, Rm. 4.G.14 >>>> Argonne, IL 60439 >>>> (630)252-3703 >>>> kkeegan(a)anl.gov >>>> >>>> kevin.p.keegan(a)gmail.com (home) >>>> (847)733-1079 >>>> >>> >>> >>> >>> -- >>> Dr. Jack A. Gilbert B.Sc. Ph.D. >>> Argonne National Laboratory >>> Bldg. 202, Biosciences >>> Room B373 >>> 9700 South Cass Avenue >>> Argonne, IL, 60439 >>> Tel: +1 630 252-7489 >>> Cell: +1 630 915 2383 >>> Email: gilbertjack(a)anl.gov <gilbertjack(a)gmail.com> >>> Twitter: @gilbertjacka >>> Website: http://www.bio.anl.gov/PI/gilbert.html >>> Scholar:http://scholar.google.com/citations?user=9fGoifYAAAAJ >>> >> >> >> >> -- >> Kevin >> >> >> __________________________________ >> Kevin P. Keegan, PhD >> >> Argonne National Laboratory (work) >> 9700 South Cass Avenue >> Bldg. 240, Rm. 4.G.14 >> Argonne, IL 60439 >> (630)252-3703 >> kkeegan(a)anl.gov >> >> kevin.p.keegan(a)gmail.com (home) >> (847)733-1079 >> > > > > -- > Dr. Jack A. Gilbert B.Sc. Ph.D. > Argonne National Laboratory > Bldg. 202, Biosciences > Room B373 > 9700 South Cass Avenue > Argonne, IL, 60439 > Tel: +1 630 252-7489 > Cell: +1 630 915 2383 > Email: gilbertjack(a)anl.gov <gilbertjack(a)gmail.com> > Twitter: @gilbertjacka > Website: http://www.bio.anl.gov/PI/gilbert.html > Scholar:http://scholar.google.com/citations?user=9fGoifYAAAAJ > -- Kevin __________________________________ Kevin P. Keegan, PhD Argonne National Laboratory (work) 9700 South Cass Avenue Bldg. 240, Rm. 4.G.14 Argonne, IL 60439 (630)252-3703 kkeegan(a)anl.gov kevin.p.keegan(a)gmail.com (home) (847)733-1079

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Re: [dionlab] research club
by Jack Gilbert 31 Oct '13

31 Oct '13

Hi Kevin, Thats weird I didn't get an email asking for approval. I have added, Nicole, Kim, Chris, Iratxe, Sean, Jarrad, and Simon to this email. Jack On Thu, Oct 31, 2013 at 10:21 AM, Kevin Keegan <kevin.p.keegan(a)gmail.com>wrote: > Hey Jack, > > What's the best way to contact your group members? I tried the > jacklab(a)igsb.anl.gov email list that Hunter set up - I think you have to > approve me to send messages to it (the message was bounced back to me with > the note pasted below). If you don't use this list, just let me know who > should received the emails. > > Your mail to 'jacklab' with the subject > > research club > > Is being held until the list moderator can review it for approval. > > The reason it is being held: > > Post by non-member to a members-only list > > Either the message will get posted to the list, or you will receive > notification of the moderator's decision. If you would like to cancel > this posting, please visit the following URL: > > Thanks > Kevin > > > On Tue, Oct 29, 2013 at 12:44 PM, Jack Gilbert <gilbertjack(a)anl.gov>wrote: > >> Hi Kevin, >> >> Sounds good, we already do one of these with Ken's group as well. So I >> cannot promise people have the time to turn up to both each time. But agree >> that folks should interact more. >> >> Jack >> >> >> On Tue, Oct 29, 2013 at 12:42 PM, Kevin Keegan <kevin.p.keegan(a)gmail.com>wrote: >> >>> Hey Jack, >>> >>> We've started up our research club again. >>> >>> We meet ~every other Thursday, 9:30 - 10:30 - 240, 4313. >>> Schedule<https://docs.google.com/document/d/1UKEmqXLkSs-eC9xks5DmIwUdSvIPObkynbfYDAX…> >>> >>> It would be great if anyone in your group wanted to participate. >>> >>> This Thursday (31rst), Andreas will be presenting. >>> >>> Thanks >>> Kevin >>> >>> >>> >>> >>> -- >>> Kevin >>> >>> >>> __________________________________ >>> Kevin P. Keegan, PhD >>> >>> Argonne National Laboratory (work) >>> 9700 South Cass Avenue >>> Bldg. 240, Rm. 4.G.14 >>> Argonne, IL 60439 >>> (630)252-3703 >>> kkeegan(a)anl.gov >>> >>> kevin.p.keegan(a)gmail.com (home) >>> (847)733-1079 >>> >> >> >> >> -- >> Dr. Jack A. Gilbert B.Sc. Ph.D. >> Argonne National Laboratory >> Bldg. 202, Biosciences >> Room B373 >> 9700 South Cass Avenue >> Argonne, IL, 60439 >> Tel: +1 630 252-7489 >> Cell: +1 630 915 2383 >> Email: gilbertjack(a)anl.gov <gilbertjack(a)gmail.com> >> Twitter: @gilbertjacka >> Website: http://www.bio.anl.gov/PI/gilbert.html >> Scholar:http://scholar.google.com/citations?user=9fGoifYAAAAJ >> > > > > -- > Kevin > > > __________________________________ > Kevin P. Keegan, PhD > > Argonne National Laboratory (work) > 9700 South Cass Avenue > Bldg. 240, Rm. 4.G.14 > Argonne, IL 60439 > (630)252-3703 > kkeegan(a)anl.gov > > kevin.p.keegan(a)gmail.com (home) > (847)733-1079 > -- Dr. Jack A. Gilbert B.Sc. Ph.D. Argonne National Laboratory Bldg. 202, Biosciences Room B373 9700 South Cass Avenue Argonne, IL, 60439 Tel: +1 630 252-7489 Cell: +1 630 915 2383 Email: gilbertjack(a)anl.gov <gilbertjack(a)gmail.com> Twitter: @gilbertjacka Website: http://www.bio.anl.gov/PI/gilbert.html Scholar:http://scholar.google.com/citations?user=9fGoifYAAAAJ

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Re: [dionlab] research club
by Kevin Keegan 31 Oct '13

31 Oct '13

Hey Jack, What's the best way to contact your group members? I tried the jacklab(a)igsb.anl.gov email list that Hunter set up - I think you have to approve me to send messages to it (the message was bounced back to me with the note pasted below). If you don't use this list, just let me know who should received the emails. Your mail to 'jacklab' with the subject research club Is being held until the list moderator can review it for approval. The reason it is being held: Post by non-member to a members-only list Either the message will get posted to the list, or you will receive notification of the moderator's decision. If you would like to cancel this posting, please visit the following URL: Thanks Kevin On Tue, Oct 29, 2013 at 12:44 PM, Jack Gilbert <gilbertjack(a)anl.gov> wrote: > Hi Kevin, > > Sounds good, we already do one of these with Ken's group as well. So I > cannot promise people have the time to turn up to both each time. But agree > that folks should interact more. > > Jack > > > On Tue, Oct 29, 2013 at 12:42 PM, Kevin Keegan <kevin.p.keegan(a)gmail.com>wrote: > >> Hey Jack, >> >> We've started up our research club again. >> >> We meet ~every other Thursday, 9:30 - 10:30 - 240, 4313. >> Schedule<https://docs.google.com/document/d/1UKEmqXLkSs-eC9xks5DmIwUdSvIPObkynbfYDAX…> >> >> It would be great if anyone in your group wanted to participate. >> >> This Thursday (31rst), Andreas will be presenting. >> >> Thanks >> Kevin >> >> >> >> >> -- >> Kevin >> >> >> __________________________________ >> Kevin P. Keegan, PhD >> >> Argonne National Laboratory (work) >> 9700 South Cass Avenue >> Bldg. 240, Rm. 4.G.14 >> Argonne, IL 60439 >> (630)252-3703 >> kkeegan(a)anl.gov >> >> kevin.p.keegan(a)gmail.com (home) >> (847)733-1079 >> > > > > -- > Dr. Jack A. Gilbert B.Sc. Ph.D. > Argonne National Laboratory > Bldg. 202, Biosciences > Room B373 > 9700 South Cass Avenue > Argonne, IL, 60439 > Tel: +1 630 252-7489 > Cell: +1 630 915 2383 > Email: gilbertjack(a)anl.gov <gilbertjack(a)gmail.com> > Twitter: @gilbertjacka > Website: http://www.bio.anl.gov/PI/gilbert.html > Scholar:http://scholar.google.com/citations?user=9fGoifYAAAAJ > -- Kevin __________________________________ Kevin P. Keegan, PhD Argonne National Laboratory (work) 9700 South Cass Avenue Bldg. 240, Rm. 4.G.14 Argonne, IL 60439 (630)252-3703 kkeegan(a)anl.gov kevin.p.keegan(a)gmail.com (home) (847)733-1079

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Re: [dionlab] research club
by Jack Gilbert 29 Oct '13

29 Oct '13

Hi Kevin, Sounds good, we already do one of these with Ken's group as well. So I cannot promise people have the time to turn up to both each time. But agree that folks should interact more. Jack On Tue, Oct 29, 2013 at 12:42 PM, Kevin Keegan <kevin.p.keegan(a)gmail.com>wrote: > Hey Jack, > > We've started up our research club again. > > We meet ~every other Thursday, 9:30 - 10:30 - 240, 4313. > Schedule<https://docs.google.com/document/d/1UKEmqXLkSs-eC9xks5DmIwUdSvIPObkynbfYDAX…> > > It would be great if anyone in your group wanted to participate. > > This Thursday (31rst), Andreas will be presenting. > > Thanks > Kevin > > > > > -- > Kevin > > > __________________________________ > Kevin P. Keegan, PhD > > Argonne National Laboratory (work) > 9700 South Cass Avenue > Bldg. 240, Rm. 4.G.14 > Argonne, IL 60439 > (630)252-3703 > kkeegan(a)anl.gov > > kevin.p.keegan(a)gmail.com (home) > (847)733-1079 > -- Dr. Jack A. Gilbert B.Sc. Ph.D. Argonne National Laboratory Bldg. 202, Biosciences Room B373 9700 South Cass Avenue Argonne, IL, 60439 Tel: +1 630 252-7489 Cell: +1 630 915 2383 Email: gilbertjack(a)anl.gov <gilbertjack(a)gmail.com> Twitter: @gilbertjacka Website: http://www.bio.anl.gov/PI/gilbert.html Scholar:http://scholar.google.com/citations?user=9fGoifYAAAAJ

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